Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS09980 and COO64_RS09985 overlap by 23 nucleotides COO64_RS09985 and COO64_RS09990 are separated by 168 nucleotides
COO64_RS09980: COO64_RS09980 - HAMP domain-containing sensor histidine kinase, at 133,869 to 135,257
_RS09980
COO64_RS09985: COO64_RS09985 - response regulator transcription factor, at 135,235 to 135,915
_RS09985
COO64_RS09990: COO64_RS09990 - branched-chain amino acid aminotransferase, at 136,084 to 137,103
_RS09990
Position (kb) 135
136 Strain fitness (log2 ratio) -1
0
1 at 134.281 kb on + strand, within COO64_RS09980 at 134.281 kb on + strand, within COO64_RS09980 at 134.281 kb on + strand, within COO64_RS09980 at 134.281 kb on + strand, within COO64_RS09980 at 134.282 kb on - strand, within COO64_RS09980 at 134.719 kb on + strand, within COO64_RS09980 at 135.004 kb on + strand, within COO64_RS09980 at 135.005 kb on - strand, within COO64_RS09980 at 135.148 kb on + strand at 135.148 kb on + strand at 135.149 kb on - strand at 135.149 kb on - strand at 135.257 kb on + strand at 135.620 kb on + strand, within COO64_RS09985 at 135.729 kb on + strand, within COO64_RS09985 at 135.905 kb on - strand at 135.921 kb on + strand at 135.922 kb on - strand at 135.960 kb on + strand at 135.961 kb on - strand at 135.961 kb on - strand at 135.993 kb on - strand at 136.075 kb on + strand at 136.154 kb on + strand at 136.154 kb on + strand at 136.154 kb on + strand at 136.155 kb on - strand at 136.155 kb on - strand at 136.193 kb on + strand, within COO64_RS09990 at 136.193 kb on + strand, within COO64_RS09990 at 136.194 kb on - strand, within COO64_RS09990 at 136.194 kb on - strand, within COO64_RS09990 at 136.315 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.481 kb on + strand, within COO64_RS09990 at 136.482 kb on - strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.485 kb on + strand, within COO64_RS09990 at 136.486 kb on - strand, within COO64_RS09990 at 136.486 kb on - strand, within COO64_RS09990 at 136.486 kb on - strand, within COO64_RS09990 at 136.486 kb on - strand, within COO64_RS09990 at 136.518 kb on - strand, within COO64_RS09990 at 136.541 kb on + strand, within COO64_RS09990 at 136.542 kb on - strand, within COO64_RS09990 at 136.592 kb on + strand, within COO64_RS09990 at 136.638 kb on - strand, within COO64_RS09990 at 136.638 kb on - strand, within COO64_RS09990 at 136.733 kb on + strand, within COO64_RS09990 at 136.734 kb on - strand, within COO64_RS09990 at 136.913 kb on + strand, within COO64_RS09990 at 136.914 kb on - strand, within COO64_RS09990 at 136.914 kb on - strand, within COO64_RS09990 at 136.914 kb on - strand, within COO64_RS09990
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 134,281 + COO64_RS09980 0.30 +0.9 134,281 + COO64_RS09980 0.30 +0.2 134,281 + COO64_RS09980 0.30 +1.0 134,281 + COO64_RS09980 0.30 +1.6 134,282 - COO64_RS09980 0.30 +0.1 134,719 + COO64_RS09980 0.61 -0.8 135,004 + COO64_RS09980 0.82 +0.5 135,005 - COO64_RS09980 0.82 +0.7 135,148 + -0.0 135,148 + -0.9 135,149 - +1.6 135,149 - +0.3 135,257 + +0.2 135,620 + COO64_RS09985 0.57 -0.7 135,729 + COO64_RS09985 0.73 -1.0 135,905 - +0.9 135,921 + +0.5 135,922 - +1.2 135,960 + +0.5 135,961 - -1.2 135,961 - +0.5 135,993 - -1.4 136,075 + +0.6 136,154 + +0.3 136,154 + +0.4 136,154 + +1.0 136,155 - +0.9 136,155 - -0.9 136,193 + COO64_RS09990 0.11 +0.7 136,193 + COO64_RS09990 0.11 -0.5 136,194 - COO64_RS09990 0.11 -1.7 136,194 - COO64_RS09990 0.11 -0.1 136,315 + COO64_RS09990 0.23 +0.3 136,481 + COO64_RS09990 0.39 -0.1 136,481 + COO64_RS09990 0.39 -0.8 136,481 + COO64_RS09990 0.39 +0.3 136,481 + COO64_RS09990 0.39 -0.1 136,481 + COO64_RS09990 0.39 +0.4 136,481 + COO64_RS09990 0.39 +0.3 136,481 + COO64_RS09990 0.39 +0.4 136,482 - COO64_RS09990 0.39 -1.7 136,485 + COO64_RS09990 0.39 +0.5 136,485 + COO64_RS09990 0.39 +0.5 136,485 + COO64_RS09990 0.39 -0.1 136,485 + COO64_RS09990 0.39 -0.3 136,485 + COO64_RS09990 0.39 -1.6 136,485 + COO64_RS09990 0.39 +0.1 136,486 - COO64_RS09990 0.39 +0.0 136,486 - COO64_RS09990 0.39 -1.2 136,486 - COO64_RS09990 0.39 +0.1 136,486 - COO64_RS09990 0.39 -1.4 136,518 - COO64_RS09990 0.43 -0.5 136,541 + COO64_RS09990 0.45 -0.4 136,542 - COO64_RS09990 0.45 +0.3 136,592 + COO64_RS09990 0.50 -0.5 136,638 - COO64_RS09990 0.54 -0.0 136,638 - COO64_RS09990 0.54 +0.9 136,733 + COO64_RS09990 0.64 -0.2 136,734 - COO64_RS09990 0.64 -0.4 136,913 + COO64_RS09990 0.81 -0.1 136,914 - COO64_RS09990 0.81 -0.3 136,914 - COO64_RS09990 0.81 -0.4 136,914 - COO64_RS09990 0.81 +0.3
Or see this region's nucleotide sequence