Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS07740

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS07735 and COO64_RS07740 overlap by 20 nucleotidesCOO64_RS07740 and COO64_RS07745 are separated by 79 nucleotidesCOO64_RS07745 and COO64_RS07750 are separated by 81 nucleotides COO64_RS07735: COO64_RS07735 - bestrophin family protein, at 38,448 to 39,365 _RS07735 COO64_RS07740: COO64_RS07740 - bile acid:sodium symporter family protein, at 39,346 to 40,338 _RS07740 COO64_RS07745: COO64_RS07745 - helix-turn-helix domain-containing protein, at 40,418 to 41,233 _RS07745 COO64_RS07750: COO64_RS07750 - hypothetical protein, at 41,315 to 41,710 _RS07750 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 38.353 kb on + strandat 38.353 kb on + strandat 38.353 kb on + strandat 38.353 kb on + strandat 38.353 kb on + strandat 38.353 kb on + strandat 38.353 kb on + strandat 38.354 kb on - strandat 38.354 kb on - strandat 38.354 kb on - strandat 38.354 kb on - strandat 38.378 kb on + strandat 38.378 kb on + strandat 38.378 kb on + strandat 38.402 kb on + strandat 38.402 kb on + strandat 38.402 kb on + strandat 38.538 kb on + strandat 38.538 kb on + strandat 38.539 kb on - strandat 38.539 kb on - strandat 38.545 kb on + strand, within COO64_RS07735at 38.546 kb on - strand, within COO64_RS07735at 38.546 kb on - strand, within COO64_RS07735at 38.592 kb on + strand, within COO64_RS07735at 38.599 kb on + strand, within COO64_RS07735at 38.599 kb on + strand, within COO64_RS07735at 38.600 kb on - strand, within COO64_RS07735at 38.600 kb on - strand, within COO64_RS07735at 38.677 kb on - strand, within COO64_RS07735at 38.820 kb on + strand, within COO64_RS07735at 38.820 kb on + strand, within COO64_RS07735at 39.033 kb on + strand, within COO64_RS07735at 39.033 kb on + strand, within COO64_RS07735at 39.033 kb on + strand, within COO64_RS07735at 39.034 kb on - strand, within COO64_RS07735at 39.084 kb on + strand, within COO64_RS07735at 39.084 kb on + strand, within COO64_RS07735at 39.084 kb on + strand, within COO64_RS07735at 39.085 kb on - strand, within COO64_RS07735at 39.085 kb on - strand, within COO64_RS07735at 39.085 kb on - strand, within COO64_RS07735at 39.085 kb on - strand, within COO64_RS07735at 39.118 kb on - strand, within COO64_RS07735at 39.192 kb on + strand, within COO64_RS07735at 39.192 kb on + strand, within COO64_RS07735at 39.363 kb on + strandat 39.393 kb on - strandat 39.707 kb on + strand, within COO64_RS07740at 39.982 kb on - strand, within COO64_RS07740at 40.025 kb on + strand, within COO64_RS07740at 40.025 kb on + strand, within COO64_RS07740at 40.026 kb on - strand, within COO64_RS07740at 40.026 kb on - strand, within COO64_RS07740at 40.040 kb on + strand, within COO64_RS07740at 40.041 kb on - strand, within COO64_RS07740at 40.123 kb on + strand, within COO64_RS07740at 40.316 kb on - strandat 40.332 kb on - strandat 40.356 kb on + strandat 40.493 kb on + strandat 40.493 kb on + strandat 40.494 kb on - strandat 40.494 kb on - strandat 40.494 kb on - strandat 40.565 kb on + strand, within COO64_RS07745at 40.566 kb on - strand, within COO64_RS07745at 40.566 kb on - strand, within COO64_RS07745at 40.700 kb on + strand, within COO64_RS07745at 40.700 kb on + strand, within COO64_RS07745at 40.809 kb on - strand, within COO64_RS07745at 41.156 kb on - strandat 41.156 kb on - strandat 41.231 kb on + strandat 41.231 kb on + strandat 41.231 kb on + strandat 41.269 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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38,353 + +0.2
38,353 + +1.1
38,353 + -0.3
38,353 + -0.0
38,353 + +0.3
38,353 + +1.2
38,353 + -0.3
38,354 - +0.2
38,354 - -0.2
38,354 - +0.2
38,354 - -1.0
38,378 + +0.9
38,378 + -0.6
38,378 + -0.9
38,402 + -0.9
38,402 + -0.0
38,402 + -0.5
38,538 + -0.4
38,538 + +0.5
38,539 - -0.6
38,539 - +0.5
38,545 + COO64_RS07735 0.11 +0.8
38,546 - COO64_RS07735 0.11 +0.1
38,546 - COO64_RS07735 0.11 +0.1
38,592 + COO64_RS07735 0.16 +0.3
38,599 + COO64_RS07735 0.16 -1.1
38,599 + COO64_RS07735 0.16 +0.0
38,600 - COO64_RS07735 0.17 -0.8
38,600 - COO64_RS07735 0.17 -0.6
38,677 - COO64_RS07735 0.25 +0.5
38,820 + COO64_RS07735 0.41 +1.4
38,820 + COO64_RS07735 0.41 -0.7
39,033 + COO64_RS07735 0.64 +0.0
39,033 + COO64_RS07735 0.64 +1.1
39,033 + COO64_RS07735 0.64 -1.8
39,034 - COO64_RS07735 0.64 -0.1
39,084 + COO64_RS07735 0.69 -0.3
39,084 + COO64_RS07735 0.69 -1.3
39,084 + COO64_RS07735 0.69 -0.0
39,085 - COO64_RS07735 0.69 -0.0
39,085 - COO64_RS07735 0.69 +0.1
39,085 - COO64_RS07735 0.69 +0.3
39,085 - COO64_RS07735 0.69 -2.2
39,118 - COO64_RS07735 0.73 -0.4
39,192 + COO64_RS07735 0.81 +0.3
39,192 + COO64_RS07735 0.81 -1.0
39,363 + -0.2
39,393 - +0.3
39,707 + COO64_RS07740 0.36 -0.5
39,982 - COO64_RS07740 0.64 -0.8
40,025 + COO64_RS07740 0.68 +0.5
40,025 + COO64_RS07740 0.68 -0.9
40,026 - COO64_RS07740 0.68 -0.6
40,026 - COO64_RS07740 0.68 +0.6
40,040 + COO64_RS07740 0.70 -0.8
40,041 - COO64_RS07740 0.70 +0.3
40,123 + COO64_RS07740 0.78 +0.2
40,316 - -0.0
40,332 - -0.5
40,356 + +0.3
40,493 + -0.7
40,493 + -0.9
40,494 - +0.4
40,494 - +0.1
40,494 - +0.3
40,565 + COO64_RS07745 0.18 +0.0
40,566 - COO64_RS07745 0.18 -0.6
40,566 - COO64_RS07745 0.18 -0.8
40,700 + COO64_RS07745 0.35 +0.7
40,700 + COO64_RS07745 0.35 -0.7
40,809 - COO64_RS07745 0.48 +0.1
41,156 - +0.8
41,156 - -0.6
41,231 + -1.0
41,231 + -0.2
41,231 + +0.8
41,269 - -0.1

Or see this region's nucleotide sequence