Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS07495

Experiment: supernatant control, M9 with 0.25X LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	supernatant control, M9 with 0.25X LB
1,013,703	+		COO64_RS07485	0.53	-1.1
1,013,703	+		COO64_RS07485	0.53	-3.1
1,013,703	+		COO64_RS07485	0.53	+0.9
1,013,703	+		COO64_RS07485	0.53	+0.4
1,013,703	+		COO64_RS07485	0.53	+0.4
1,013,703	+		COO64_RS07485	0.53	-1.2
1,013,703	+		COO64_RS07485	0.53	+0.3
1,013,703	+		COO64_RS07485	0.53	+1.9
1,013,703	+		COO64_RS07485	0.53	-0.1
1,013,703	+		COO64_RS07485	0.53	-0.2
1,013,704	-		COO64_RS07485	0.53	-0.4
1,013,704	-		COO64_RS07485	0.53	+0.1
1,013,704	-		COO64_RS07485	0.53	-1.9
1,013,704	-		COO64_RS07485	0.53	-1.1
1,013,705	+		COO64_RS07485	0.54	+0.2
1,013,705	+		COO64_RS07485	0.54	+0.2
1,013,705	+		COO64_RS07485	0.54	-0.2
1,013,705	+		COO64_RS07485	0.54	-0.8
1,013,705	+		COO64_RS07485	0.54	-2.1
1,013,705	+		COO64_RS07485	0.54	-1.4
1,013,705	+		COO64_RS07485	0.54	+0.4
1,013,705	+		COO64_RS07485	0.54	+1.4
1,013,705	+		COO64_RS07485	0.54	+0.0
1,013,705	+		COO64_RS07485	0.54	-0.2
1,013,705	+		COO64_RS07485	0.54	-0.1
1,013,705	+		COO64_RS07485	0.54	-0.1
1,013,705	+		COO64_RS07485	0.54	+0.6
1,013,705	+		COO64_RS07485	0.54	+0.9
1,013,706	-		COO64_RS07485	0.54	-0.1
1,013,706	-		COO64_RS07485	0.54	+0.6
1,013,706	-		COO64_RS07485	0.54	+0.1
1,013,706	-		COO64_RS07485	0.54	+1.4
1,013,706	-		COO64_RS07485	0.54	-0.1
1,013,706	-		COO64_RS07485	0.54	-1.2
1,013,734	+		COO64_RS07485	0.63	-0.4
1,013,747	+		COO64_RS07485	0.67	+0.1
1,013,747	+		COO64_RS07485	0.67	+1.7
1,013,747	+		COO64_RS07485	0.67	-1.6
1,013,747	+		COO64_RS07485	0.67	-0.6
1,013,747	+		COO64_RS07485	0.67	+1.1
1,013,747	+		COO64_RS07485	0.67	+0.6
1,013,747	+		COO64_RS07485	0.67	+0.7
1,013,748	-		COO64_RS07485	0.67	-0.5
1,013,748	-		COO64_RS07485	0.67	+0.9
1,013,771	+		COO64_RS07485	0.74	-0.0
1,013,771	+		COO64_RS07485	0.74	+0.1
1,013,771	+		COO64_RS07485	0.74	-0.4
1,013,771	+		COO64_RS07485	0.74	+0.8
1,013,771	+		COO64_RS07485	0.74	+0.7
1,013,771	+		COO64_RS07485	0.74	+0.4
1,013,772	-		COO64_RS07485	0.74	-0.5
1,013,772	-		COO64_RS07485	0.74	-1.1
1,013,772	-		COO64_RS07485	0.74	-0.5
1,013,777	+		COO64_RS07485	0.76	+0.7
1,013,872	-				+0.2
1,013,928	+		COO64_RS07490	0.13	-1.4
1,013,928	+		COO64_RS07490	0.13	+0.8
1,013,929	-		COO64_RS07490	0.14	-0.2
1,013,929	-		COO64_RS07490	0.14	-0.6
1,013,934	+		COO64_RS07490	0.14	+1.3
1,013,935	-		COO64_RS07490	0.15	-1.2
1,013,935	-		COO64_RS07490	0.15	+0.3
1,013,935	-		COO64_RS07490	0.15	+0.8
1,013,935	-		COO64_RS07490	0.15	-0.3
1,013,935	-		COO64_RS07490	0.15	-0.1
1,013,950	+		COO64_RS07490	0.17	-0.5
1,014,014	+		COO64_RS07490	0.29	+0.2
1,014,015	-		COO64_RS07490	0.29	+0.4
1,014,015	-		COO64_RS07490	0.29	+0.4
1,014,015	-		COO64_RS07490	0.29	-0.3
1,014,017	+		COO64_RS07490	0.30	-0.3
1,014,017	+		COO64_RS07490	0.30	-1.1
1,014,018	-		COO64_RS07490	0.30	-1.3
1,014,018	-		COO64_RS07490	0.30	-0.3
1,014,065	+		COO64_RS07490	0.38	-0.2
1,014,066	-		COO64_RS07490	0.38	+0.7
1,014,066	-		COO64_RS07490	0.38	+0.1
1,014,069	+		COO64_RS07490	0.39	-0.3
1,014,070	-		COO64_RS07490	0.39	-0.3
1,014,070	-		COO64_RS07490	0.39	-1.7
1,014,080	+		COO64_RS07490	0.41	-0.4
1,014,080	+		COO64_RS07490	0.41	-0.4
1,014,124	+		COO64_RS07490	0.49	+0.6
1,014,125	-		COO64_RS07490	0.49	-2.4
1,014,125	-		COO64_RS07490	0.49	-3.0
1,014,125	-		COO64_RS07490	0.49	+0.2
1,014,126	+		COO64_RS07490	0.49	-0.7
1,014,126	+		COO64_RS07490	0.49	-0.3
1,014,127	-		COO64_RS07490	0.49	+0.8
1,014,127	-		COO64_RS07490	0.49	-0.6
1,014,127	-		COO64_RS07490	0.49	-1.7
1,014,187	+		COO64_RS07490	0.60	-0.8
1,014,204	+		COO64_RS07490	0.63	+1.9
1,014,277	+		COO64_RS07490	0.77	+1.1
1,014,277	+		COO64_RS07490	0.77	-0.9
1,014,277	+		COO64_RS07490	0.77	+0.2
1,014,277	+		COO64_RS07490	0.77	-0.1
1,014,287	+		COO64_RS07490	0.78	+0.4
1,014,288	-		COO64_RS07490	0.79	-0.3
1,014,288	-		COO64_RS07490	0.79	+0.5
1,014,288	-		COO64_RS07490	0.79	-0.2
1,014,291	+		COO64_RS07490	0.79	+0.3
1,014,291	+		COO64_RS07490	0.79	-1.4
1,014,292	-		COO64_RS07490	0.79	-1.3
1,014,292	-		COO64_RS07490	0.79	+0.6
1,014,292	-		COO64_RS07490	0.79	-0.5
1,014,341	+		COO64_RS07490	0.88	-0.9
1,014,342	-		COO64_RS07490	0.88	-0.4
1,014,342	-		COO64_RS07490	0.88	+0.5
1,014,342	-		COO64_RS07490	0.88	+0.3
1,014,372	+				-2.5
1,014,373	-				+0.2
1,014,379	-				-0.8
1,014,379	-				+0.7
1,014,379	-				+0.1
1,014,384	+				-1.1
1,014,385	-				-0.5
1,014,455	+				+0.8
1,014,455	+				+0.6
1,014,460	+				+0.2
1,014,460	+				+0.4
1,014,461	-				-0.4
1,014,463	+				+0.4
1,014,464	-				-0.6
1,014,489	-				+0.4
1,014,489	-				-0.5
1,014,504	+				-2.4
1,014,505	-				+0.5
1,014,508	+				+1.1
1,014,508	+				+1.3
1,014,513	-				-0.4
1,014,523	+				-0.5
1,014,524	-				+0.8
1,014,524	-				-0.3
1,014,615	-				-0.1
1,014,703	-				-0.1
1,014,830	+		COO64_RS07495	0.41	-1.1
1,014,830	+		COO64_RS07495	0.41	-0.6
1,014,831	-		COO64_RS07495	0.41	-0.4
1,014,866	+		COO64_RS07495	0.50	-0.9
1,014,883	-		COO64_RS07495	0.54	-0.2
1,015,068	+				-1.2
1,015,148	-				-0.1
1,015,148	-				+0.7
1,015,152	-				-0.4
1,015,214	-				+0.0
1,015,223	-				+0.2
1,015,250	+				-1.5
1,015,250	+				+1.6
1,015,270	+				+0.6
1,015,295	+				+0.9
1,015,295	+				+1.9
1,015,296	-				-0.2
1,015,296	-				+0.0
1,015,296	-				-0.5
1,015,296	-				+0.0
1,015,302	+				+0.1
1,015,302	+				-0.9
1,015,303	-				+0.6
1,015,303	-				-0.9
1,015,303	-				-1.2
1,015,303	-				+0.0
1,015,303	-				+0.1
1,015,303	-				-1.4
1,015,306	+				-0.4
1,015,306	+				+0.0
1,015,306	+				-0.9
1,015,306	+				-0.2
1,015,306	+				-0.2
1,015,306	+				-1.2
1,015,306	+				-0.2
1,015,306	+				+0.6
1,015,306	+				-1.0
1,015,306	+				-0.4
1,015,306	+				+0.9
1,015,306	+				-0.3
1,015,307	-				-0.7
1,015,307	-				+0.1
1,015,307	-				+1.4
1,015,307	-				-0.2
1,015,312	+				+0.1
1,015,312	+				-0.1
1,015,312	+				-0.8
1,015,380	+				-0.1
1,015,404	+				-0.2
1,015,410	+				+0.0
1,015,410	+				-1.2
1,015,410	+				+1.1
1,015,410	+				-0.2
1,015,411	-				+0.4
1,015,411	-				-1.2
1,015,411	-				+0.2
1,015,411	-				-0.6
1,015,411	-				+0.0
1,015,451	+		COO64_RS07500	0.13	+0.1
1,015,453	+		COO64_RS07500	0.13	-0.8
1,015,453	+		COO64_RS07500	0.13	+0.2
1,015,454	-		COO64_RS07500	0.13	+0.2
1,015,473	+		COO64_RS07500	0.15	-0.6
1,015,473	+		COO64_RS07500	0.15	-0.3
1,015,473	+		COO64_RS07500	0.15	-0.4
1,015,474	-		COO64_RS07500	0.15	-0.4
1,015,474	-		COO64_RS07500	0.15	-1.3
1,015,485	+		COO64_RS07500	0.16	-1.1
1,015,485	+		COO64_RS07500	0.16	+0.9
1,015,486	-		COO64_RS07500	0.16	-0.9
1,015,486	-		COO64_RS07500	0.16	-1.3
1,015,486	-		COO64_RS07500	0.16	-0.5
1,015,543	-		COO64_RS07500	0.21	-2.1
1,015,543	-		COO64_RS07500	0.21	-0.2
1,015,675	+		COO64_RS07500	0.33	+0.9
1,015,675	+		COO64_RS07500	0.33	+1.4
1,015,676	-		COO64_RS07500	0.33	+0.9
1,015,676	-		COO64_RS07500	0.33	-0.7
1,015,676	-		COO64_RS07500	0.33	+0.5
1,015,676	-		COO64_RS07500	0.33	-0.3
1,015,676	-		COO64_RS07500	0.33	-1.5
1,015,822	+		COO64_RS07500	0.46	-0.6
1,015,822	+		COO64_RS07500	0.46	+0.2
1,015,822	+		COO64_RS07500	0.46	+0.7
1,015,822	+		COO64_RS07500	0.46	+0.1
1,015,822	+		COO64_RS07500	0.46	-0.2
1,015,835	+		COO64_RS07500	0.47	-1.0
1,015,906	+		COO64_RS07500	0.54	+0.6
1,015,907	-		COO64_RS07500	0.54	-0.6
1,015,907	-		COO64_RS07500	0.54	-0.4
1,015,907	-		COO64_RS07500	0.54	+0.1
1,015,907	-		COO64_RS07500	0.54	-0.4
1,015,907	-		COO64_RS07500	0.54	+0.8
1,016,013	+		COO64_RS07500	0.63	+0.3
1,016,013	+		COO64_RS07500	0.63	-0.4
1,016,013	+		COO64_RS07500	0.63	-0.5
1,016,014	-		COO64_RS07500	0.63	-0.3
1,016,046	-		COO64_RS07500	0.66	-0.9
1,016,052	+		COO64_RS07500	0.67	-2.0