Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS07055

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS07050 and COO64_RS07055 overlap by 4 nucleotidesCOO64_RS07055 and COO64_RS07060 overlap by 37 nucleotides COO64_RS07050: COO64_RS07050 - HlyD family secretion protein, at 917,140 to 918,204 _RS07050 COO64_RS07055: COO64_RS07055 - DHA2 family efflux MFS transporter permease subunit, at 918,201 to 919,775 _RS07055 COO64_RS07060: COO64_RS07060 - TolC family outer membrane protein, at 919,739 to 921,088 _RS07060 Position (kb) 918 919 920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 917.224 kb on + strandat 917.225 kb on - strandat 917.236 kb on + strandat 917.360 kb on - strand, within COO64_RS07050at 917.366 kb on + strand, within COO64_RS07050at 917.413 kb on + strand, within COO64_RS07050at 917.413 kb on + strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.651 kb on + strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.668 kb on - strand, within COO64_RS07050at 917.668 kb on - strand, within COO64_RS07050at 917.729 kb on - strand, within COO64_RS07050at 917.901 kb on - strand, within COO64_RS07050at 918.002 kb on + strand, within COO64_RS07050at 918.002 kb on + strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.080 kb on + strand, within COO64_RS07050at 918.081 kb on - strand, within COO64_RS07050at 918.081 kb on - strand, within COO64_RS07050at 918.320 kb on - strandat 918.348 kb on + strandat 918.349 kb on - strandat 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.367 kb on + strand, within COO64_RS07055at 918.368 kb on - strand, within COO64_RS07055at 918.417 kb on + strand, within COO64_RS07055at 918.417 kb on + strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.421 kb on - strand, within COO64_RS07055at 918.445 kb on + strand, within COO64_RS07055at 918.445 kb on + strand, within COO64_RS07055at 918.539 kb on + strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.783 kb on + strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.960 kb on - strand, within COO64_RS07055at 919.029 kb on + strand, within COO64_RS07055at 919.029 kb on + strand, within COO64_RS07055at 919.086 kb on + strand, within COO64_RS07055at 919.212 kb on + strand, within COO64_RS07055at 919.212 kb on + strand, within COO64_RS07055at 919.212 kb on + strand, within COO64_RS07055at 919.212 kb on + strand, within COO64_RS07055at 919.212 kb on + strand, within COO64_RS07055at 919.213 kb on - strand, within COO64_RS07055at 919.213 kb on - strand, within COO64_RS07055at 919.213 kb on - strand, within COO64_RS07055at 919.213 kb on - strand, within COO64_RS07055at 919.213 kb on - strand, within COO64_RS07055at 919.227 kb on + strand, within COO64_RS07055at 919.227 kb on + strand, within COO64_RS07055at 919.227 kb on + strand, within COO64_RS07055at 919.227 kb on + strand, within COO64_RS07055at 919.227 kb on + strand, within COO64_RS07055at 919.228 kb on - strand, within COO64_RS07055at 919.228 kb on - strand, within COO64_RS07055at 919.474 kb on + strand, within COO64_RS07055at 919.660 kb on + strandat 919.660 kb on + strandat 919.660 kb on + strandat 919.661 kb on - strandat 919.785 kb on + strandat 919.786 kb on - strandat 919.865 kb on + strandat 920.021 kb on + strand, within COO64_RS07060at 920.022 kb on - strand, within COO64_RS07060at 920.159 kb on + strand, within COO64_RS07060at 920.159 kb on + strand, within COO64_RS07060at 920.252 kb on + strand, within COO64_RS07060at 920.303 kb on + strand, within COO64_RS07060at 920.315 kb on + strand, within COO64_RS07060at 920.315 kb on + strand, within COO64_RS07060at 920.618 kb on + strand, within COO64_RS07060at 920.618 kb on + strand, within COO64_RS07060at 920.618 kb on + strand, within COO64_RS07060at 920.619 kb on - strand, within COO64_RS07060at 920.619 kb on - strand, within COO64_RS07060at 920.646 kb on - strand, within COO64_RS07060at 920.687 kb on + strand, within COO64_RS07060at 920.687 kb on + strand, within COO64_RS07060at 920.687 kb on + strand, within COO64_RS07060at 920.688 kb on - strand, within COO64_RS07060at 920.688 kb on - strand, within COO64_RS07060

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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917,224 + -0.4
917,225 - +0.4
917,236 + +0.4
917,360 - COO64_RS07050 0.21 -1.1
917,366 + COO64_RS07050 0.21 -0.6
917,413 + COO64_RS07050 0.26 -2.8
917,413 + COO64_RS07050 0.26 -1.1
917,414 - COO64_RS07050 0.26 -1.3
917,414 - COO64_RS07050 0.26 -2.0
917,414 - COO64_RS07050 0.26 -0.4
917,651 + COO64_RS07050 0.48 +0.6
917,652 - COO64_RS07050 0.48 -1.1
917,652 - COO64_RS07050 0.48 -0.5
917,652 - COO64_RS07050 0.48 +0.9
917,668 - COO64_RS07050 0.50 -0.4
917,668 - COO64_RS07050 0.50 -0.4
917,729 - COO64_RS07050 0.55 +0.2
917,901 - COO64_RS07050 0.71 -1.1
918,002 + COO64_RS07050 0.81 -0.6
918,002 + COO64_RS07050 0.81 -1.1
918,003 - COO64_RS07050 0.81 -1.1
918,003 - COO64_RS07050 0.81 -1.0
918,003 - COO64_RS07050 0.81 -1.5
918,080 + COO64_RS07050 0.88 -0.2
918,081 - COO64_RS07050 0.88 +0.4
918,081 - COO64_RS07050 0.88 -2.3
918,320 - -0.3
918,348 + -0.7
918,349 - -1.5
918,364 + COO64_RS07055 0.10 -0.4
918,364 + COO64_RS07055 0.10 -1.5
918,364 + COO64_RS07055 0.10 +0.4
918,364 + COO64_RS07055 0.10 -1.2
918,364 + COO64_RS07055 0.10 +0.9
918,364 + COO64_RS07055 0.10 -0.7
918,364 + COO64_RS07055 0.10 +0.4
918,364 + COO64_RS07055 0.10 -0.9
918,364 + COO64_RS07055 0.10 -0.6
918,365 - COO64_RS07055 0.10 +0.4
918,365 - COO64_RS07055 0.10 +0.1
918,365 - COO64_RS07055 0.10 -0.6
918,365 - COO64_RS07055 0.10 +0.9
918,365 - COO64_RS07055 0.10 +0.2
918,365 - COO64_RS07055 0.10 -0.1
918,367 + COO64_RS07055 0.11 +2.4
918,368 - COO64_RS07055 0.11 +0.4
918,417 + COO64_RS07055 0.14 +0.4
918,417 + COO64_RS07055 0.14 -0.1
918,418 - COO64_RS07055 0.14 -1.3
918,418 - COO64_RS07055 0.14 -0.9
918,418 - COO64_RS07055 0.14 -0.1
918,418 - COO64_RS07055 0.14 -0.7
918,421 - COO64_RS07055 0.14 -0.6
918,445 + COO64_RS07055 0.15 -0.3
918,445 + COO64_RS07055 0.15 -0.7
918,539 + COO64_RS07055 0.21 +0.9
918,559 - COO64_RS07055 0.23 -1.4
918,559 - COO64_RS07055 0.23 -0.4
918,559 - COO64_RS07055 0.23 -0.4
918,559 - COO64_RS07055 0.23 -0.4
918,783 + COO64_RS07055 0.37 -0.4
918,784 - COO64_RS07055 0.37 -1.6
918,784 - COO64_RS07055 0.37 +0.6
918,784 - COO64_RS07055 0.37 -0.5
918,960 - COO64_RS07055 0.48 -0.4
919,029 + COO64_RS07055 0.53 -0.9
919,029 + COO64_RS07055 0.53 +0.9
919,086 + COO64_RS07055 0.56 -1.1
919,212 + COO64_RS07055 0.64 -1.8
919,212 + COO64_RS07055 0.64 -0.5
919,212 + COO64_RS07055 0.64 -0.1
919,212 + COO64_RS07055 0.64 -1.6
919,212 + COO64_RS07055 0.64 +1.1
919,213 - COO64_RS07055 0.64 -1.4
919,213 - COO64_RS07055 0.64 +0.4
919,213 - COO64_RS07055 0.64 -0.6
919,213 - COO64_RS07055 0.64 -0.4
919,213 - COO64_RS07055 0.64 -0.9
919,227 + COO64_RS07055 0.65 +0.4
919,227 + COO64_RS07055 0.65 -0.2
919,227 + COO64_RS07055 0.65 -0.4
919,227 + COO64_RS07055 0.65 -0.6
919,227 + COO64_RS07055 0.65 +0.4
919,228 - COO64_RS07055 0.65 +0.1
919,228 - COO64_RS07055 0.65 -0.9
919,474 + COO64_RS07055 0.81 -1.4
919,660 + -0.9
919,660 + +0.4
919,660 + -0.4
919,661 - -0.9
919,785 + +0.4
919,786 - -1.1
919,865 + -0.6
920,021 + COO64_RS07060 0.21 +0.1
920,022 - COO64_RS07060 0.21 -1.1
920,159 + COO64_RS07060 0.31 +0.9
920,159 + COO64_RS07060 0.31 -0.2
920,252 + COO64_RS07060 0.38 +0.1
920,303 + COO64_RS07060 0.42 -0.1
920,315 + COO64_RS07060 0.43 +0.6
920,315 + COO64_RS07060 0.43 +0.5
920,618 + COO64_RS07060 0.65 -0.5
920,618 + COO64_RS07060 0.65 -1.2
920,618 + COO64_RS07060 0.65 +1.4
920,619 - COO64_RS07060 0.65 -0.4
920,619 - COO64_RS07060 0.65 +1.5
920,646 - COO64_RS07060 0.67 -0.6
920,687 + COO64_RS07060 0.70 -1.2
920,687 + COO64_RS07060 0.70 +0.4
920,687 + COO64_RS07060 0.70 -0.2
920,688 - COO64_RS07060 0.70 -1.4
920,688 - COO64_RS07060 0.70 +0.2

Or see this region's nucleotide sequence