Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS07050

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS07040 and COO64_RS07045 are separated by 32 nucleotidesCOO64_RS07045 and COO64_RS07050 are separated by 80 nucleotidesCOO64_RS07050 and COO64_RS07055 overlap by 4 nucleotides COO64_RS07040: COO64_RS07040 - fatty acid desaturase, at 915,231 to 916,223 _RS07040 COO64_RS07045: COO64_RS07045 - DUF3050 domain-containing protein, at 916,256 to 917,059 _RS07045 COO64_RS07050: COO64_RS07050 - HlyD family secretion protein, at 917,140 to 918,204 _RS07050 COO64_RS07055: COO64_RS07055 - DHA2 family efflux MFS transporter permease subunit, at 918,201 to 919,775 _RS07055 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 916.152 kb on + strandat 916.153 kb on - strandat 916.255 kb on + strandat 916.255 kb on + strandat 916.255 kb on + strandat 916.255 kb on + strandat 916.256 kb on - strandat 916.256 kb on - strandat 916.256 kb on - strandat 916.256 kb on - strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.277 kb on + strandat 916.278 kb on - strandat 916.278 kb on - strandat 916.278 kb on - strandat 916.278 kb on - strandat 916.278 kb on - strandat 916.279 kb on + strandat 916.279 kb on + strandat 916.280 kb on - strandat 916.280 kb on - strandat 916.488 kb on + strand, within COO64_RS07045at 916.488 kb on + strand, within COO64_RS07045at 916.489 kb on - strand, within COO64_RS07045at 916.489 kb on - strand, within COO64_RS07045at 916.489 kb on - strand, within COO64_RS07045at 916.489 kb on - strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.550 kb on + strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.551 kb on - strand, within COO64_RS07045at 916.709 kb on + strand, within COO64_RS07045at 916.709 kb on + strand, within COO64_RS07045at 916.709 kb on + strand, within COO64_RS07045at 916.709 kb on + strand, within COO64_RS07045at 916.736 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.832 kb on + strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.833 kb on - strand, within COO64_RS07045at 916.835 kb on + strand, within COO64_RS07045at 916.835 kb on + strand, within COO64_RS07045at 916.836 kb on - strand, within COO64_RS07045at 916.836 kb on - strand, within COO64_RS07045at 916.836 kb on - strand, within COO64_RS07045at 917.028 kb on + strandat 917.028 kb on + strandat 917.028 kb on + strandat 917.029 kb on - strandat 917.029 kb on - strandat 917.039 kb on + strandat 917.134 kb on + strandat 917.135 kb on - strandat 917.135 kb on - strandat 917.135 kb on - strandat 917.135 kb on - strandat 917.135 kb on - strandat 917.135 kb on - strandat 917.156 kb on - strandat 917.171 kb on + strandat 917.224 kb on + strandat 917.225 kb on - strandat 917.236 kb on + strandat 917.360 kb on - strand, within COO64_RS07050at 917.366 kb on + strand, within COO64_RS07050at 917.413 kb on + strand, within COO64_RS07050at 917.413 kb on + strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.414 kb on - strand, within COO64_RS07050at 917.651 kb on + strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.652 kb on - strand, within COO64_RS07050at 917.668 kb on - strand, within COO64_RS07050at 917.668 kb on - strand, within COO64_RS07050at 917.729 kb on - strand, within COO64_RS07050at 917.901 kb on - strand, within COO64_RS07050at 918.002 kb on + strand, within COO64_RS07050at 918.002 kb on + strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.003 kb on - strand, within COO64_RS07050at 918.080 kb on + strand, within COO64_RS07050at 918.081 kb on - strand, within COO64_RS07050at 918.081 kb on - strand, within COO64_RS07050at 918.320 kb on - strandat 918.348 kb on + strandat 918.349 kb on - strandat 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.364 kb on + strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.365 kb on - strand, within COO64_RS07055at 918.367 kb on + strand, within COO64_RS07055at 918.368 kb on - strand, within COO64_RS07055at 918.417 kb on + strand, within COO64_RS07055at 918.417 kb on + strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.418 kb on - strand, within COO64_RS07055at 918.421 kb on - strand, within COO64_RS07055at 918.445 kb on + strand, within COO64_RS07055at 918.445 kb on + strand, within COO64_RS07055at 918.539 kb on + strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.559 kb on - strand, within COO64_RS07055at 918.783 kb on + strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.784 kb on - strand, within COO64_RS07055at 918.960 kb on - strand, within COO64_RS07055at 919.029 kb on + strand, within COO64_RS07055at 919.029 kb on + strand, within COO64_RS07055at 919.086 kb on + strand, within COO64_RS07055

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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916,152 + +0.4
916,153 - -1.9
916,255 + -0.2
916,255 + +0.1
916,255 + -2.1
916,255 + +0.1
916,256 - -0.4
916,256 - -0.6
916,256 - -1.4
916,256 - -1.5
916,277 + -0.3
916,277 + -0.4
916,277 + -1.2
916,277 + +0.7
916,277 + -1.8
916,277 + -1.6
916,277 + +0.9
916,277 + -1.4
916,277 + -0.2
916,278 - -1.4
916,278 - -0.6
916,278 - -1.4
916,278 - -0.6
916,278 - -0.4
916,279 + -0.3
916,279 + -0.6
916,280 - -1.1
916,280 - +0.9
916,488 + COO64_RS07045 0.29 -0.5
916,488 + COO64_RS07045 0.29 -0.6
916,489 - COO64_RS07045 0.29 -2.1
916,489 - COO64_RS07045 0.29 +0.4
916,489 - COO64_RS07045 0.29 -0.4
916,489 - COO64_RS07045 0.29 +0.4
916,550 + COO64_RS07045 0.37 +0.1
916,550 + COO64_RS07045 0.37 -0.2
916,550 + COO64_RS07045 0.37 +0.6
916,550 + COO64_RS07045 0.37 -0.5
916,550 + COO64_RS07045 0.37 -0.3
916,550 + COO64_RS07045 0.37 -0.4
916,550 + COO64_RS07045 0.37 +0.4
916,550 + COO64_RS07045 0.37 -1.6
916,550 + COO64_RS07045 0.37 -1.4
916,551 - COO64_RS07045 0.37 -0.1
916,551 - COO64_RS07045 0.37 -0.1
916,551 - COO64_RS07045 0.37 +1.5
916,551 - COO64_RS07045 0.37 -1.9
916,551 - COO64_RS07045 0.37 +0.2
916,551 - COO64_RS07045 0.37 -1.2
916,709 + COO64_RS07045 0.56 +0.5
916,709 + COO64_RS07045 0.56 -1.1
916,709 + COO64_RS07045 0.56 +1.8
916,709 + COO64_RS07045 0.56 -0.1
916,736 + COO64_RS07045 0.60 -1.2
916,832 + COO64_RS07045 0.72 -1.1
916,832 + COO64_RS07045 0.72 +0.1
916,832 + COO64_RS07045 0.72 +1.4
916,832 + COO64_RS07045 0.72 -1.1
916,832 + COO64_RS07045 0.72 -2.4
916,832 + COO64_RS07045 0.72 -0.9
916,832 + COO64_RS07045 0.72 -0.1
916,832 + COO64_RS07045 0.72 +0.9
916,833 - COO64_RS07045 0.72 -0.9
916,833 - COO64_RS07045 0.72 -1.2
916,833 - COO64_RS07045 0.72 -1.1
916,833 - COO64_RS07045 0.72 -1.5
916,833 - COO64_RS07045 0.72 -0.4
916,833 - COO64_RS07045 0.72 -0.1
916,833 - COO64_RS07045 0.72 -1.1
916,833 - COO64_RS07045 0.72 -1.4
916,833 - COO64_RS07045 0.72 -1.6
916,833 - COO64_RS07045 0.72 +0.9
916,835 + COO64_RS07045 0.72 +0.1
916,835 + COO64_RS07045 0.72 +1.3
916,836 - COO64_RS07045 0.72 +0.1
916,836 - COO64_RS07045 0.72 +0.4
916,836 - COO64_RS07045 0.72 -0.9
917,028 + +0.6
917,028 + -0.4
917,028 + -0.9
917,029 - -1.9
917,029 - -1.7
917,039 + +0.4
917,134 + +0.9
917,135 - -0.1
917,135 - -0.6
917,135 - +0.6
917,135 - -0.1
917,135 - -0.3
917,135 - +0.3
917,156 - -1.6
917,171 + -0.1
917,224 + -0.4
917,225 - +0.4
917,236 + +0.4
917,360 - COO64_RS07050 0.21 -1.1
917,366 + COO64_RS07050 0.21 -0.6
917,413 + COO64_RS07050 0.26 -2.8
917,413 + COO64_RS07050 0.26 -1.1
917,414 - COO64_RS07050 0.26 -1.3
917,414 - COO64_RS07050 0.26 -2.0
917,414 - COO64_RS07050 0.26 -0.4
917,651 + COO64_RS07050 0.48 +0.6
917,652 - COO64_RS07050 0.48 -1.1
917,652 - COO64_RS07050 0.48 -0.5
917,652 - COO64_RS07050 0.48 +0.9
917,668 - COO64_RS07050 0.50 -0.4
917,668 - COO64_RS07050 0.50 -0.4
917,729 - COO64_RS07050 0.55 +0.2
917,901 - COO64_RS07050 0.71 -1.1
918,002 + COO64_RS07050 0.81 -0.6
918,002 + COO64_RS07050 0.81 -1.1
918,003 - COO64_RS07050 0.81 -1.1
918,003 - COO64_RS07050 0.81 -1.0
918,003 - COO64_RS07050 0.81 -1.5
918,080 + COO64_RS07050 0.88 -0.2
918,081 - COO64_RS07050 0.88 +0.4
918,081 - COO64_RS07050 0.88 -2.3
918,320 - -0.3
918,348 + -0.7
918,349 - -1.5
918,364 + COO64_RS07055 0.10 -0.4
918,364 + COO64_RS07055 0.10 -1.5
918,364 + COO64_RS07055 0.10 +0.4
918,364 + COO64_RS07055 0.10 -1.2
918,364 + COO64_RS07055 0.10 +0.9
918,364 + COO64_RS07055 0.10 -0.7
918,364 + COO64_RS07055 0.10 +0.4
918,364 + COO64_RS07055 0.10 -0.9
918,364 + COO64_RS07055 0.10 -0.6
918,365 - COO64_RS07055 0.10 +0.4
918,365 - COO64_RS07055 0.10 +0.1
918,365 - COO64_RS07055 0.10 -0.6
918,365 - COO64_RS07055 0.10 +0.9
918,365 - COO64_RS07055 0.10 +0.2
918,365 - COO64_RS07055 0.10 -0.1
918,367 + COO64_RS07055 0.11 +2.4
918,368 - COO64_RS07055 0.11 +0.4
918,417 + COO64_RS07055 0.14 +0.4
918,417 + COO64_RS07055 0.14 -0.1
918,418 - COO64_RS07055 0.14 -1.3
918,418 - COO64_RS07055 0.14 -0.9
918,418 - COO64_RS07055 0.14 -0.1
918,418 - COO64_RS07055 0.14 -0.7
918,421 - COO64_RS07055 0.14 -0.6
918,445 + COO64_RS07055 0.15 -0.3
918,445 + COO64_RS07055 0.15 -0.7
918,539 + COO64_RS07055 0.21 +0.9
918,559 - COO64_RS07055 0.23 -1.4
918,559 - COO64_RS07055 0.23 -0.4
918,559 - COO64_RS07055 0.23 -0.4
918,559 - COO64_RS07055 0.23 -0.4
918,783 + COO64_RS07055 0.37 -0.4
918,784 - COO64_RS07055 0.37 -1.6
918,784 - COO64_RS07055 0.37 +0.6
918,784 - COO64_RS07055 0.37 -0.5
918,960 - COO64_RS07055 0.48 -0.4
919,029 + COO64_RS07055 0.53 -0.9
919,029 + COO64_RS07055 0.53 +0.9
919,086 + COO64_RS07055 0.56 -1.1

Or see this region's nucleotide sequence