Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS06350

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS06345 and COO64_RS06350 are separated by 87 nucleotidesCOO64_RS06350 and COO64_RS27675 are separated by 10 nucleotides COO64_RS06345: COO64_RS06345 - phage tail sheath family protein, at 774,859 to 776,025 _RS06345 COO64_RS06350: COO64_RS06350 - phage tail assembly chaperone, at 776,113 to 776,562 _RS06350 COO64_RS27675: COO64_RS27675 - pyocin knob domain-containing protein, at 776,573 to 777,667 _RS27675 Position (kb) 776 777Strain fitness (log2 ratio) -2 -1 0 1 2at 775.136 kb on + strand, within COO64_RS06345at 775.136 kb on + strand, within COO64_RS06345at 775.137 kb on - strand, within COO64_RS06345at 775.138 kb on + strand, within COO64_RS06345at 775.138 kb on + strand, within COO64_RS06345at 775.139 kb on - strand, within COO64_RS06345at 775.139 kb on - strand, within COO64_RS06345at 775.139 kb on - strand, within COO64_RS06345at 775.139 kb on - strand, within COO64_RS06345at 775.139 kb on - strand, within COO64_RS06345at 775.260 kb on + strand, within COO64_RS06345at 775.260 kb on + strand, within COO64_RS06345at 775.260 kb on + strand, within COO64_RS06345at 775.261 kb on - strand, within COO64_RS06345at 775.261 kb on - strand, within COO64_RS06345at 775.261 kb on - strand, within COO64_RS06345at 775.310 kb on + strand, within COO64_RS06345at 775.311 kb on - strand, within COO64_RS06345at 775.636 kb on + strand, within COO64_RS06345at 775.803 kb on + strand, within COO64_RS06345at 775.805 kb on + strand, within COO64_RS06345at 775.805 kb on + strand, within COO64_RS06345at 775.806 kb on - strand, within COO64_RS06345at 775.806 kb on - strand, within COO64_RS06345at 775.827 kb on + strand, within COO64_RS06345at 775.828 kb on - strand, within COO64_RS06345at 775.929 kb on + strandat 775.929 kb on + strandat 775.929 kb on + strandat 775.930 kb on - strandat 776.031 kb on + strandat 776.032 kb on - strandat 776.032 kb on - strandat 776.032 kb on - strandat 776.114 kb on + strandat 776.114 kb on + strandat 776.210 kb on + strand, within COO64_RS06350at 776.229 kb on - strand, within COO64_RS06350at 776.229 kb on - strand, within COO64_RS06350at 776.299 kb on - strand, within COO64_RS06350at 776.394 kb on + strand, within COO64_RS06350at 776.445 kb on - strand, within COO64_RS06350at 776.499 kb on - strand, within COO64_RS06350at 776.499 kb on - strand, within COO64_RS06350at 776.523 kb on - strandat 776.523 kb on - strandat 776.523 kb on - strandat 776.562 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.567 kb on + strandat 776.592 kb on + strandat 776.592 kb on + strandat 776.592 kb on + strandat 776.593 kb on - strandat 776.593 kb on - strandat 776.593 kb on - strandat 776.637 kb on + strandat 776.638 kb on - strandat 776.654 kb on + strandat 776.654 kb on + strandat 776.655 kb on - strandat 776.655 kb on - strandat 776.655 kb on - strandat 776.655 kb on - strandat 776.655 kb on - strandat 776.875 kb on + strand, within COO64_RS27675at 776.876 kb on - strand, within COO64_RS27675at 776.876 kb on - strand, within COO64_RS27675at 776.876 kb on - strand, within COO64_RS27675at 776.876 kb on - strand, within COO64_RS27675at 776.876 kb on - strand, within COO64_RS27675at 776.965 kb on + strand, within COO64_RS27675at 776.966 kb on - strand, within COO64_RS27675at 776.966 kb on - strand, within COO64_RS27675at 776.966 kb on - strand, within COO64_RS27675at 776.966 kb on - strand, within COO64_RS27675at 777.049 kb on + strand, within COO64_RS27675at 777.052 kb on + strand, within COO64_RS27675at 777.114 kb on - strand, within COO64_RS27675at 777.114 kb on - strand, within COO64_RS27675at 777.185 kb on + strand, within COO64_RS27675at 777.186 kb on - strand, within COO64_RS27675at 777.199 kb on + strand, within COO64_RS27675at 777.200 kb on - strand, within COO64_RS27675at 777.205 kb on - strand, within COO64_RS27675at 777.297 kb on + strand, within COO64_RS27675at 777.331 kb on - strand, within COO64_RS27675at 777.331 kb on - strand, within COO64_RS27675at 777.381 kb on + strand, within COO64_RS27675at 777.381 kb on + strand, within COO64_RS27675at 777.381 kb on + strand, within COO64_RS27675at 777.382 kb on - strand, within COO64_RS27675at 777.388 kb on + strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.394 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.397 kb on - strand, within COO64_RS27675at 777.508 kb on + strand, within COO64_RS27675at 777.508 kb on + strand, within COO64_RS27675at 777.509 kb on - strand, within COO64_RS27675at 777.509 kb on - strand, within COO64_RS27675at 777.530 kb on - strand, within COO64_RS27675at 777.530 kb on - strand, within COO64_RS27675at 777.530 kb on - strand, within COO64_RS27675at 777.547 kb on + strand, within COO64_RS27675

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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775,136 + COO64_RS06345 0.24 -0.9
775,136 + COO64_RS06345 0.24 -0.3
775,137 - COO64_RS06345 0.24 -0.0
775,138 + COO64_RS06345 0.24 -1.2
775,138 + COO64_RS06345 0.24 -1.3
775,139 - COO64_RS06345 0.24 -0.1
775,139 - COO64_RS06345 0.24 -0.9
775,139 - COO64_RS06345 0.24 -0.9
775,139 - COO64_RS06345 0.24 +0.3
775,139 - COO64_RS06345 0.24 +0.5
775,260 + COO64_RS06345 0.34 -0.8
775,260 + COO64_RS06345 0.34 +0.6
775,260 + COO64_RS06345 0.34 -0.6
775,261 - COO64_RS06345 0.34 +0.2
775,261 - COO64_RS06345 0.34 +0.8
775,261 - COO64_RS06345 0.34 -0.7
775,310 + COO64_RS06345 0.39 +0.7
775,311 - COO64_RS06345 0.39 +0.4
775,636 + COO64_RS06345 0.67 -1.3
775,803 + COO64_RS06345 0.81 +0.2
775,805 + COO64_RS06345 0.81 -0.3
775,805 + COO64_RS06345 0.81 +0.1
775,806 - COO64_RS06345 0.81 -0.2
775,806 - COO64_RS06345 0.81 +1.0
775,827 + COO64_RS06345 0.83 +0.8
775,828 - COO64_RS06345 0.83 +0.0
775,929 + +0.1
775,929 + -0.4
775,929 + -0.4
775,930 - +0.7
776,031 + +0.6
776,032 - -1.7
776,032 - +0.5
776,032 - +0.3
776,114 + -0.1
776,114 + +0.0
776,210 + COO64_RS06350 0.22 -0.9
776,229 - COO64_RS06350 0.26 +0.7
776,229 - COO64_RS06350 0.26 -0.1
776,299 - COO64_RS06350 0.41 -0.1
776,394 + COO64_RS06350 0.62 -0.8
776,445 - COO64_RS06350 0.74 -0.5
776,499 - COO64_RS06350 0.86 -1.5
776,499 - COO64_RS06350 0.86 -0.8
776,523 - -0.8
776,523 - +0.1
776,523 - -0.1
776,562 + -0.3
776,567 + -0.1
776,567 + +0.3
776,567 + +0.6
776,567 + -0.4
776,567 + +0.1
776,567 + +0.5
776,567 + -0.5
776,592 + +1.3
776,592 + -0.4
776,592 + -2.3
776,593 - +0.2
776,593 - -0.7
776,593 - +0.7
776,637 + +0.9
776,638 - +0.7
776,654 + -0.7
776,654 + +0.1
776,655 - +0.2
776,655 - +0.0
776,655 - +0.0
776,655 - -0.2
776,655 - +0.8
776,875 + COO64_RS27675 0.28 -1.5
776,876 - COO64_RS27675 0.28 +2.3
776,876 - COO64_RS27675 0.28 +0.1
776,876 - COO64_RS27675 0.28 +0.2
776,876 - COO64_RS27675 0.28 -0.2
776,876 - COO64_RS27675 0.28 -0.1
776,965 + COO64_RS27675 0.36 +0.7
776,966 - COO64_RS27675 0.36 +0.5
776,966 - COO64_RS27675 0.36 -0.7
776,966 - COO64_RS27675 0.36 +0.6
776,966 - COO64_RS27675 0.36 -0.2
777,049 + COO64_RS27675 0.43 +0.2
777,052 + COO64_RS27675 0.44 +0.9
777,114 - COO64_RS27675 0.49 -0.1
777,114 - COO64_RS27675 0.49 +0.9
777,185 + COO64_RS27675 0.56 -0.1
777,186 - COO64_RS27675 0.56 -1.7
777,199 + COO64_RS27675 0.57 -1.1
777,200 - COO64_RS27675 0.57 +0.2
777,205 - COO64_RS27675 0.58 +0.4
777,297 + COO64_RS27675 0.66 -0.5
777,331 - COO64_RS27675 0.69 -0.8
777,331 - COO64_RS27675 0.69 +1.1
777,381 + COO64_RS27675 0.74 +1.1
777,381 + COO64_RS27675 0.74 +1.0
777,381 + COO64_RS27675 0.74 +0.3
777,382 - COO64_RS27675 0.74 +0.5
777,388 + COO64_RS27675 0.74 -0.5
777,394 - COO64_RS27675 0.75 -1.9
777,394 - COO64_RS27675 0.75 -1.0
777,394 - COO64_RS27675 0.75 -0.6
777,394 - COO64_RS27675 0.75 -0.4
777,394 - COO64_RS27675 0.75 +0.1
777,394 - COO64_RS27675 0.75 +0.9
777,394 - COO64_RS27675 0.75 -0.2
777,394 - COO64_RS27675 0.75 -0.8
777,394 - COO64_RS27675 0.75 -0.5
777,394 - COO64_RS27675 0.75 +0.1
777,394 - COO64_RS27675 0.75 -0.7
777,394 - COO64_RS27675 0.75 -0.8
777,394 - COO64_RS27675 0.75 -1.1
777,394 - COO64_RS27675 0.75 -0.0
777,394 - COO64_RS27675 0.75 -0.9
777,394 - COO64_RS27675 0.75 +0.5
777,394 - COO64_RS27675 0.75 -0.1
777,394 - COO64_RS27675 0.75 -1.2
777,394 - COO64_RS27675 0.75 +0.3
777,394 - COO64_RS27675 0.75 -0.4
777,394 - COO64_RS27675 0.75 +0.4
777,397 - COO64_RS27675 0.75 +0.2
777,397 - COO64_RS27675 0.75 -0.1
777,397 - COO64_RS27675 0.75 -0.7
777,397 - COO64_RS27675 0.75 +0.3
777,397 - COO64_RS27675 0.75 +1.4
777,397 - COO64_RS27675 0.75 +0.9
777,397 - COO64_RS27675 0.75 -1.0
777,508 + COO64_RS27675 0.85 +0.3
777,508 + COO64_RS27675 0.85 -1.2
777,509 - COO64_RS27675 0.85 -0.3
777,509 - COO64_RS27675 0.85 -0.7
777,530 - COO64_RS27675 0.87 -0.2
777,530 - COO64_RS27675 0.87 +0.4
777,530 - COO64_RS27675 0.87 -0.5
777,547 + COO64_RS27675 0.89 -1.9

Or see this region's nucleotide sequence