Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabD and plsX are separated by 129 nucleotides plsX and rpmF are separated by 3 nucleotides rpmF and COO64_RS05825 are separated by 13 nucleotides COO64_RS05825 and COO64_RS05830 are separated by 95 nucleotides
COO64_RS05810: fabD - ACP S-malonyltransferase, at 677,954 to 678,892
fabD
COO64_RS05815: plsX - phosphate acyltransferase PlsX, at 679,022 to 680,032
plsX
COO64_RS05820: rpmF - 50S ribosomal protein L32, at 680,036 to 680,218
rpmF
COO64_RS05825: COO64_RS05825 - YceD family protein, at 680,232 to 680,759
_RS05825
COO64_RS05830: COO64_RS05830 - nucleoside triphosphate pyrophosphatase, at 680,855 to 681,433
_RS05830
Position (kb) 679
680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 678.906 kb on - strand at 678.906 kb on - strand at 678.927 kb on - strand at 678.999 kb on + strand at 678.999 kb on + strand at 679.000 kb on - strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.017 kb on + strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.018 kb on - strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.019 kb on + strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.020 kb on - strand at 679.023 kb on + strand at 679.024 kb on - strand at 679.024 kb on - strand at 679.024 kb on - strand at 679.024 kb on - strand at 679.024 kb on - strand at 679.118 kb on + strand at 679.118 kb on + strand at 679.118 kb on + strand at 679.118 kb on + strand at 679.118 kb on + strand at 679.119 kb on - strand at 679.119 kb on - strand at 679.180 kb on + strand, within plsX at 679.180 kb on + strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.181 kb on - strand, within plsX at 679.208 kb on + strand, within plsX at 679.208 kb on + strand, within plsX at 679.208 kb on + strand, within plsX at 679.331 kb on - strand, within plsX at 679.377 kb on + strand, within plsX at 679.377 kb on + strand, within plsX at 679.377 kb on + strand, within plsX at 679.377 kb on + strand, within plsX at 679.378 kb on - strand, within plsX at 679.407 kb on + strand, within plsX at 679.407 kb on + strand, within plsX at 679.407 kb on + strand, within plsX at 679.407 kb on + strand, within plsX at 679.407 kb on + strand, within plsX at 679.408 kb on - strand, within plsX at 679.408 kb on - strand, within plsX at 679.408 kb on - strand, within plsX at 679.408 kb on - strand, within plsX at 679.408 kb on - strand, within plsX at 679.560 kb on + strand, within plsX at 679.561 kb on - strand, within plsX at 679.614 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.679 kb on + strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.680 kb on - strand, within plsX at 679.683 kb on + strand, within plsX at 679.683 kb on + strand, within plsX at 679.683 kb on + strand, within plsX at 679.683 kb on + strand, within plsX at 679.684 kb on - strand, within plsX at 679.754 kb on + strand, within plsX at 679.754 kb on + strand, within plsX at 679.754 kb on + strand, within plsX at 679.755 kb on - strand, within plsX at 679.889 kb on + strand, within plsX at 679.889 kb on + strand, within plsX at 679.960 kb on + strand at 679.961 kb on - strand at 680.037 kb on + strand at 680.038 kb on - strand at 680.038 kb on - strand at 680.266 kb on - strand at 680.266 kb on - strand at 680.290 kb on - strand, within COO64_RS05825 at 680.760 kb on - strand at 680.760 kb on - strand at 680.760 kb on - strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.825 kb on - strand at 680.825 kb on - strand at 680.825 kb on - strand at 680.851 kb on + strand at 680.852 kb on - strand at 680.865 kb on + strand at 680.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 678,906 - -0.1 678,906 - -0.1 678,927 - -0.0 678,999 + -1.6 678,999 + -0.4 679,000 - -1.7 679,017 + +2.9 679,017 + +0.1 679,017 + +0.2 679,017 + +0.0 679,017 + -1.3 679,017 + +0.4 679,017 + +0.5 679,017 + -0.7 679,017 + -0.1 679,017 + -1.3 679,017 + +0.4 679,017 + +0.6 679,017 + +0.7 679,017 + -1.3 679,017 + +0.2 679,017 + +0.1 679,017 + +0.9 679,017 + +0.0 679,017 + +0.1 679,017 + +0.2 679,018 - +0.7 679,018 - +0.3 679,018 - -0.7 679,018 - +1.3 679,018 - +0.3 679,018 - +0.6 679,018 - +0.3 679,018 - -1.1 679,018 - +0.9 679,018 - +0.2 679,018 - -1.3 679,018 - +1.6 679,018 - -0.0 679,018 - +0.6 679,018 - -0.6 679,018 - +0.5 679,018 - -1.3 679,018 - +0.8 679,018 - +0.6 679,018 - -0.6 679,018 - -0.2 679,018 - -1.0 679,019 + +0.9 679,019 + +0.7 679,019 + +0.7 679,019 + -0.6 679,019 + +0.5 679,019 + +0.2 679,019 + -1.0 679,019 + -0.9 679,019 + -0.4 679,019 + +0.0 679,019 + +0.7 679,019 + -0.4 679,019 + -0.2 679,019 + -0.5 679,019 + +0.9 679,019 + +0.2 679,019 + -0.6 679,019 + -0.2 679,019 + -0.3 679,019 + -0.4 679,019 + +0.1 679,019 + +0.7 679,019 + +0.5 679,020 - +1.1 679,020 - -0.7 679,020 - +0.1 679,020 - +0.6 679,020 - +0.1 679,020 - -0.1 679,020 - +0.9 679,020 - -0.6 679,020 - +0.8 679,020 - -0.9 679,020 - +0.1 679,020 - -0.1 679,020 - +0.3 679,020 - +0.2 679,023 + -0.1 679,024 - +0.2 679,024 - -0.9 679,024 - -0.3 679,024 - -0.6 679,024 - -0.2 679,118 + -0.7 679,118 + -0.4 679,118 + +0.5 679,118 + -1.2 679,118 + -0.5 679,119 - +0.5 679,119 - -0.2 679,180 + plsX COO64_RS05815 0.16 -3.3 679,180 + plsX COO64_RS05815 0.16 -0.1 679,181 - plsX COO64_RS05815 0.16 -0.2 679,181 - plsX COO64_RS05815 0.16 -1.3 679,181 - plsX COO64_RS05815 0.16 -2.2 679,181 - plsX COO64_RS05815 0.16 -0.1 679,181 - plsX COO64_RS05815 0.16 +0.2 679,181 - plsX COO64_RS05815 0.16 -0.9 679,181 - plsX COO64_RS05815 0.16 -1.3 679,208 + plsX COO64_RS05815 0.18 -0.8 679,208 + plsX COO64_RS05815 0.18 -1.5 679,208 + plsX COO64_RS05815 0.18 -1.3 679,331 - plsX COO64_RS05815 0.31 -0.8 679,377 + plsX COO64_RS05815 0.35 -0.2 679,377 + plsX COO64_RS05815 0.35 -0.3 679,377 + plsX COO64_RS05815 0.35 -0.2 679,377 + plsX COO64_RS05815 0.35 -0.0 679,378 - plsX COO64_RS05815 0.35 +0.9 679,407 + plsX COO64_RS05815 0.38 +0.1 679,407 + plsX COO64_RS05815 0.38 +0.2 679,407 + plsX COO64_RS05815 0.38 -0.6 679,407 + plsX COO64_RS05815 0.38 -0.9 679,407 + plsX COO64_RS05815 0.38 -1.3 679,408 - plsX COO64_RS05815 0.38 -0.9 679,408 - plsX COO64_RS05815 0.38 -0.6 679,408 - plsX COO64_RS05815 0.38 +0.9 679,408 - plsX COO64_RS05815 0.38 -2.1 679,408 - plsX COO64_RS05815 0.38 -0.3 679,560 + plsX COO64_RS05815 0.53 -0.9 679,561 - plsX COO64_RS05815 0.53 -0.3 679,614 + plsX COO64_RS05815 0.59 -0.1 679,679 + plsX COO64_RS05815 0.65 -0.1 679,679 + plsX COO64_RS05815 0.65 +0.3 679,679 + plsX COO64_RS05815 0.65 -0.2 679,679 + plsX COO64_RS05815 0.65 -0.3 679,679 + plsX COO64_RS05815 0.65 -1.3 679,679 + plsX COO64_RS05815 0.65 -0.4 679,680 - plsX COO64_RS05815 0.65 -0.7 679,680 - plsX COO64_RS05815 0.65 -0.4 679,680 - plsX COO64_RS05815 0.65 -0.5 679,680 - plsX COO64_RS05815 0.65 -0.6 679,680 - plsX COO64_RS05815 0.65 -0.2 679,680 - plsX COO64_RS05815 0.65 -1.3 679,680 - plsX COO64_RS05815 0.65 -0.1 679,680 - plsX COO64_RS05815 0.65 +0.3 679,680 - plsX COO64_RS05815 0.65 -1.4 679,680 - plsX COO64_RS05815 0.65 -2.3 679,680 - plsX COO64_RS05815 0.65 -2.0 679,683 + plsX COO64_RS05815 0.65 -1.2 679,683 + plsX COO64_RS05815 0.65 +0.1 679,683 + plsX COO64_RS05815 0.65 -0.8 679,683 + plsX COO64_RS05815 0.65 -0.1 679,684 - plsX COO64_RS05815 0.65 -0.1 679,754 + plsX COO64_RS05815 0.72 -0.6 679,754 + plsX COO64_RS05815 0.72 -0.5 679,754 + plsX COO64_RS05815 0.72 +0.2 679,755 - plsX COO64_RS05815 0.73 +0.9 679,889 + plsX COO64_RS05815 0.86 -0.9 679,889 + plsX COO64_RS05815 0.86 +0.5 679,960 + -1.8 679,961 - +1.9 680,037 + -0.1 680,038 - -0.4 680,038 - -1.1 680,266 - -0.6 680,266 - -1.9 680,290 - COO64_RS05825 0.11 +0.2 680,760 - +0.9 680,760 - +0.7 680,760 - -0.8 680,824 + -0.1 680,824 + +0.9 680,824 + +0.4 680,825 - -0.2 680,825 - -1.4 680,825 - -0.9 680,851 + -0.3 680,852 - +0.5 680,865 + +0.2 680,868 + -0.0
Or see this region's nucleotide sequence