Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt accD and COO64_RS05625 are separated by 279 nucleotides COO64_RS05625 and truA are separated by 61 nucleotides truA and COO64_RS05635 are separated by 119 nucleotides
COO64_RS05620: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 639,990 to 640,910
accD
COO64_RS05625: COO64_RS05625 - phosphoribosylanthranilate isomerase, at 641,190 to 641,810
_RS05625
COO64_RS05630: truA - tRNA pseudouridine(38-40) synthase TruA, at 641,872 to 642,696
truA
COO64_RS05635: COO64_RS05635 - FimV/HubP family polar landmark protein, at 642,816 to 645,539
_RS05635
Position (kb) 641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.965 kb on - strand at 640.988 kb on - strand at 640.988 kb on - strand at 641.141 kb on - strand at 641.141 kb on - strand at 641.214 kb on - strand at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.422 kb on + strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.423 kb on - strand, within COO64_RS05625 at 641.438 kb on + strand, within COO64_RS05625 at 641.455 kb on + strand, within COO64_RS05625 at 641.455 kb on + strand, within COO64_RS05625 at 641.455 kb on + strand, within COO64_RS05625 at 641.455 kb on + strand, within COO64_RS05625 at 641.456 kb on - strand, within COO64_RS05625 at 641.713 kb on + strand, within COO64_RS05625 at 641.713 kb on + strand, within COO64_RS05625 at 641.713 kb on + strand, within COO64_RS05625 at 641.713 kb on + strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.714 kb on - strand, within COO64_RS05625 at 641.851 kb on + strand at 641.852 kb on - strand at 641.852 kb on - strand at 641.892 kb on - strand at 641.918 kb on + strand at 641.918 kb on + strand at 641.918 kb on + strand at 641.919 kb on - strand at 641.919 kb on - strand at 641.919 kb on - strand at 641.948 kb on + strand at 641.966 kb on + strand, within truA at 641.967 kb on - strand, within truA at 641.976 kb on - strand, within truA at 642.096 kb on + strand, within truA at 642.096 kb on + strand, within truA at 642.096 kb on + strand, within truA at 642.097 kb on - strand, within truA at 642.097 kb on - strand, within truA at 642.097 kb on - strand, within truA at 642.097 kb on - strand, within truA at 642.097 kb on - strand, within truA at 642.242 kb on + strand, within truA at 642.242 kb on + strand, within truA at 642.336 kb on - strand, within truA at 642.336 kb on - strand, within truA at 642.345 kb on - strand, within truA at 642.345 kb on - strand, within truA at 642.653 kb on + strand at 642.653 kb on + strand at 642.673 kb on - strand at 642.731 kb on + strand at 642.731 kb on + strand at 642.732 kb on - strand at 642.732 kb on - strand at 642.759 kb on + strand at 642.760 kb on - strand at 642.763 kb on + strand at 642.763 kb on + strand at 642.763 kb on + strand at 642.763 kb on + strand at 642.763 kb on + strand at 642.763 kb on + strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.764 kb on - strand at 642.802 kb on + strand at 642.803 kb on - strand at 642.928 kb on + strand at 642.928 kb on + strand at 642.928 kb on + strand at 642.928 kb on + strand at 642.928 kb on + strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 642.929 kb on - strand at 643.648 kb on + strand, within COO64_RS05635 at 643.648 kb on + strand, within COO64_RS05635 at 643.649 kb on - strand, within COO64_RS05635 at 643.649 kb on - strand, within COO64_RS05635 at 643.649 kb on - strand, within COO64_RS05635
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 640,965 - +0.1 640,988 - -0.1 640,988 - +1.0 641,141 - -0.8 641,141 - +0.7 641,214 - +0.5 641,422 + COO64_RS05625 0.37 +0.1 641,422 + COO64_RS05625 0.37 -0.7 641,422 + COO64_RS05625 0.37 -0.4 641,422 + COO64_RS05625 0.37 -0.3 641,422 + COO64_RS05625 0.37 +0.9 641,422 + COO64_RS05625 0.37 -1.0 641,422 + COO64_RS05625 0.37 +0.6 641,422 + COO64_RS05625 0.37 -0.3 641,422 + COO64_RS05625 0.37 -0.6 641,423 - COO64_RS05625 0.38 -0.0 641,423 - COO64_RS05625 0.38 +1.6 641,423 - COO64_RS05625 0.38 -0.2 641,423 - COO64_RS05625 0.38 +0.2 641,423 - COO64_RS05625 0.38 -0.7 641,423 - COO64_RS05625 0.38 -0.5 641,423 - COO64_RS05625 0.38 +0.4 641,423 - COO64_RS05625 0.38 +0.4 641,438 + COO64_RS05625 0.40 -0.3 641,455 + COO64_RS05625 0.43 -0.2 641,455 + COO64_RS05625 0.43 +0.3 641,455 + COO64_RS05625 0.43 -1.7 641,455 + COO64_RS05625 0.43 -0.9 641,456 - COO64_RS05625 0.43 +0.3 641,713 + COO64_RS05625 0.84 -0.8 641,713 + COO64_RS05625 0.84 -0.4 641,713 + COO64_RS05625 0.84 -0.3 641,713 + COO64_RS05625 0.84 -0.9 641,714 - COO64_RS05625 0.84 -0.1 641,714 - COO64_RS05625 0.84 -0.3 641,714 - COO64_RS05625 0.84 -0.7 641,714 - COO64_RS05625 0.84 +0.2 641,714 - COO64_RS05625 0.84 -0.9 641,714 - COO64_RS05625 0.84 +0.3 641,851 + +0.2 641,852 - +0.3 641,852 - -0.0 641,892 - +0.5 641,918 + +0.2 641,918 + +0.6 641,918 + -0.1 641,919 - -0.1 641,919 - +0.5 641,919 - -0.9 641,948 + -0.1 641,966 + truA COO64_RS05630 0.11 -1.3 641,967 - truA COO64_RS05630 0.12 -0.3 641,976 - truA COO64_RS05630 0.13 -0.1 642,096 + truA COO64_RS05630 0.27 +0.7 642,096 + truA COO64_RS05630 0.27 -0.9 642,096 + truA COO64_RS05630 0.27 +0.9 642,097 - truA COO64_RS05630 0.27 +0.9 642,097 - truA COO64_RS05630 0.27 -0.6 642,097 - truA COO64_RS05630 0.27 -1.1 642,097 - truA COO64_RS05630 0.27 -1.1 642,097 - truA COO64_RS05630 0.27 +0.9 642,242 + truA COO64_RS05630 0.45 -2.2 642,242 + truA COO64_RS05630 0.45 -1.1 642,336 - truA COO64_RS05630 0.56 -1.7 642,336 - truA COO64_RS05630 0.56 -1.4 642,345 - truA COO64_RS05630 0.57 +0.3 642,345 - truA COO64_RS05630 0.57 -0.4 642,653 + -0.1 642,653 + +0.2 642,673 - +0.3 642,731 + +0.3 642,731 + +0.9 642,732 - -0.8 642,732 - +0.3 642,759 + +0.3 642,760 - -2.1 642,763 + +0.7 642,763 + +0.3 642,763 + +2.1 642,763 + +0.1 642,763 + -0.9 642,763 + -0.9 642,764 - +0.3 642,764 - -1.0 642,764 - +0.1 642,764 - -0.3 642,764 - -0.5 642,764 - +1.2 642,764 - -0.1 642,764 - +0.3 642,802 + -0.4 642,803 - -0.0 642,928 + +0.6 642,928 + +0.5 642,928 + +0.1 642,928 + +0.7 642,928 + -0.2 642,929 - +1.0 642,929 - +0.3 642,929 - -0.8 642,929 - -0.4 642,929 - -0.5 642,929 - +0.7 642,929 - -0.5 642,929 - +0.4 643,648 + COO64_RS05635 0.31 +0.2 643,648 + COO64_RS05635 0.31 +1.4 643,649 - COO64_RS05635 0.31 -0.0 643,649 - COO64_RS05635 0.31 +0.8 643,649 - COO64_RS05635 0.31 +0.6
Or see this region's nucleotide sequence