Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS05360

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsigX and COO64_RS05355 are separated by 114 nucleotidesCOO64_RS05355 and COO64_RS05360 are separated by 2 nucleotidesCOO64_RS05360 and COO64_RS05365 are separated by 99 nucleotides COO64_RS05350: sigX - RNA polymerase sigma factor SigX, at 578,674 to 579,240 sigX COO64_RS05355: COO64_RS05355 - mechanosensitive ion channel family protein, at 579,355 to 580,179 _RS05355 COO64_RS05360: COO64_RS05360 - CrfX protein, at 580,182 to 580,430 _RS05360 COO64_RS05365: COO64_RS05365 - zinc transporter ZntB, at 580,530 to 581,525 _RS05365 Position (kb) 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 579.234 kb on - strandat 579.258 kb on + strandat 579.302 kb on + strandat 579.333 kb on + strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.334 kb on - strandat 579.339 kb on - strandat 579.339 kb on - strandat 579.363 kb on + strandat 579.444 kb on + strand, within COO64_RS05355at 579.503 kb on + strand, within COO64_RS05355at 579.696 kb on + strand, within COO64_RS05355at 579.716 kb on + strand, within COO64_RS05355at 579.716 kb on + strand, within COO64_RS05355at 579.717 kb on - strand, within COO64_RS05355at 579.717 kb on - strand, within COO64_RS05355at 579.778 kb on + strand, within COO64_RS05355at 579.778 kb on + strand, within COO64_RS05355at 579.778 kb on + strand, within COO64_RS05355at 579.778 kb on + strand, within COO64_RS05355at 579.824 kb on + strand, within COO64_RS05355at 579.915 kb on - strand, within COO64_RS05355at 579.915 kb on - strand, within COO64_RS05355at 580.179 kb on + strandat 580.218 kb on - strand, within COO64_RS05360at 580.430 kb on + strandat 580.446 kb on + strandat 580.446 kb on + strandat 580.447 kb on - strandat 580.711 kb on + strand, within COO64_RS05365at 580.711 kb on + strand, within COO64_RS05365at 580.711 kb on + strand, within COO64_RS05365at 580.711 kb on + strand, within COO64_RS05365at 580.712 kb on - strand, within COO64_RS05365at 580.712 kb on - strand, within COO64_RS05365at 580.712 kb on - strand, within COO64_RS05365at 580.838 kb on - strand, within COO64_RS05365at 580.891 kb on + strand, within COO64_RS05365at 580.975 kb on + strand, within COO64_RS05365at 580.976 kb on - strand, within COO64_RS05365at 580.976 kb on - strand, within COO64_RS05365at 581.082 kb on + strand, within COO64_RS05365at 581.082 kb on + strand, within COO64_RS05365at 581.082 kb on + strand, within COO64_RS05365at 581.083 kb on - strand, within COO64_RS05365

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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579,234 - +0.3
579,258 + -0.7
579,302 + +0.9
579,333 + -0.9
579,334 - -0.2
579,334 - -0.1
579,334 - +1.7
579,334 - -1.3
579,334 - +1.8
579,334 - -0.7
579,334 - -0.7
579,339 - -1.4
579,339 - +0.3
579,363 + +0.3
579,444 + COO64_RS05355 0.11 -0.2
579,503 + COO64_RS05355 0.18 +0.7
579,696 + COO64_RS05355 0.41 +0.9
579,716 + COO64_RS05355 0.44 +0.6
579,716 + COO64_RS05355 0.44 +0.1
579,717 - COO64_RS05355 0.44 -1.2
579,717 - COO64_RS05355 0.44 +0.5
579,778 + COO64_RS05355 0.51 -0.6
579,778 + COO64_RS05355 0.51 -0.3
579,778 + COO64_RS05355 0.51 -1.2
579,778 + COO64_RS05355 0.51 -0.5
579,824 + COO64_RS05355 0.57 -0.4
579,915 - COO64_RS05355 0.68 +0.3
579,915 - COO64_RS05355 0.68 +0.5
580,179 + -1.4
580,218 - COO64_RS05360 0.14 -0.7
580,430 + -0.7
580,446 + +0.5
580,446 + -2.2
580,447 - -0.4
580,711 + COO64_RS05365 0.18 -0.1
580,711 + COO64_RS05365 0.18 +0.3
580,711 + COO64_RS05365 0.18 +0.5
580,711 + COO64_RS05365 0.18 -0.7
580,712 - COO64_RS05365 0.18 -0.2
580,712 - COO64_RS05365 0.18 -0.5
580,712 - COO64_RS05365 0.18 +0.1
580,838 - COO64_RS05365 0.31 +0.6
580,891 + COO64_RS05365 0.36 +0.4
580,975 + COO64_RS05365 0.45 -0.3
580,976 - COO64_RS05365 0.45 +0.1
580,976 - COO64_RS05365 0.45 -0.8
581,082 + COO64_RS05365 0.55 -0.1
581,082 + COO64_RS05365 0.55 -1.4
581,082 + COO64_RS05365 0.55 +0.2
581,083 - COO64_RS05365 0.56 -0.1

Or see this region's nucleotide sequence