Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS05235

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS05220 and COO64_RS05225 are separated by 50 nucleotidesCOO64_RS05225 and COO64_RS05230 are separated by 92 nucleotidesCOO64_RS05230 and COO64_RS05235 are separated by 94 nucleotidesCOO64_RS05235 and COO64_RS05240 are separated by 178 nucleotides COO64_RS05220: COO64_RS05220 - pseudouridine synthase, at 545,336 to 546,223 _RS05220 COO64_RS05225: COO64_RS05225 - hypothetical protein, at 546,274 to 546,585 _RS05225 COO64_RS05230: COO64_RS05230 - D-Ala-D-Ala carboxypeptidase family metallohydrolase, at 546,678 to 547,109 _RS05230 COO64_RS05235: COO64_RS05235 - glutaredoxin family protein, at 547,204 to 547,440 _RS05235 COO64_RS05240: COO64_RS05240 - monovalent cation:proton antiporter family protein, at 547,619 to 549,577 _RS05240 Position (kb) 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 546.306 kb on - strand, within COO64_RS05225at 546.306 kb on - strand, within COO64_RS05225at 546.356 kb on + strand, within COO64_RS05225at 546.356 kb on + strand, within COO64_RS05225at 546.357 kb on - strand, within COO64_RS05225at 546.366 kb on - strand, within COO64_RS05225at 546.450 kb on + strand, within COO64_RS05225at 546.450 kb on + strand, within COO64_RS05225at 546.450 kb on + strand, within COO64_RS05225at 546.450 kb on + strand, within COO64_RS05225at 546.450 kb on + strand, within COO64_RS05225at 546.451 kb on - strand, within COO64_RS05225at 546.451 kb on - strand, within COO64_RS05225at 546.560 kb on + strandat 546.625 kb on - strandat 546.631 kb on - strandat 546.710 kb on - strandat 546.751 kb on - strand, within COO64_RS05230at 546.881 kb on + strand, within COO64_RS05230at 546.881 kb on + strand, within COO64_RS05230at 546.882 kb on - strand, within COO64_RS05230at 546.882 kb on - strand, within COO64_RS05230at 546.882 kb on - strand, within COO64_RS05230at 547.034 kb on + strand, within COO64_RS05230at 547.034 kb on + strand, within COO64_RS05230at 547.035 kb on - strand, within COO64_RS05230at 547.035 kb on - strand, within COO64_RS05230at 547.205 kb on + strandat 547.205 kb on + strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.206 kb on - strandat 547.287 kb on + strand, within COO64_RS05235at 547.287 kb on + strand, within COO64_RS05235at 547.299 kb on - strand, within COO64_RS05235at 547.299 kb on - strand, within COO64_RS05235at 547.299 kb on - strand, within COO64_RS05235at 547.299 kb on - strand, within COO64_RS05235at 547.299 kb on - strand, within COO64_RS05235at 547.329 kb on + strand, within COO64_RS05235at 547.442 kb on + strandat 547.442 kb on + strandat 547.442 kb on + strandat 547.442 kb on + strandat 547.442 kb on + strandat 547.443 kb on - strandat 547.443 kb on - strandat 547.443 kb on - strandat 547.443 kb on - strandat 547.443 kb on - strandat 547.460 kb on + strandat 547.461 kb on - strandat 547.474 kb on + strandat 547.474 kb on + strandat 547.475 kb on - strandat 547.475 kb on - strandat 547.475 kb on - strandat 547.479 kb on + strandat 547.479 kb on + strandat 547.480 kb on - strandat 547.480 kb on - strandat 547.480 kb on - strandat 547.582 kb on + strandat 547.582 kb on + strandat 547.583 kb on - strandat 547.669 kb on + strandat 547.669 kb on + strandat 547.669 kb on + strandat 547.706 kb on + strandat 547.706 kb on + strandat 547.706 kb on + strandat 547.707 kb on - strandat 547.707 kb on - strandat 547.735 kb on + strandat 547.959 kb on + strand, within COO64_RS05240at 548.138 kb on + strand, within COO64_RS05240at 548.139 kb on - strand, within COO64_RS05240at 548.375 kb on + strand, within COO64_RS05240at 548.375 kb on + strand, within COO64_RS05240at 548.375 kb on + strand, within COO64_RS05240at 548.375 kb on + strand, within COO64_RS05240at 548.375 kb on + strand, within COO64_RS05240at 548.376 kb on - strand, within COO64_RS05240at 548.376 kb on - strand, within COO64_RS05240at 548.376 kb on - strand, within COO64_RS05240

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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546,306 - COO64_RS05225 0.10 -0.8
546,306 - COO64_RS05225 0.10 -0.4
546,356 + COO64_RS05225 0.26 -0.4
546,356 + COO64_RS05225 0.26 -0.3
546,357 - COO64_RS05225 0.27 -0.0
546,366 - COO64_RS05225 0.29 -0.1
546,450 + COO64_RS05225 0.56 +0.3
546,450 + COO64_RS05225 0.56 -0.7
546,450 + COO64_RS05225 0.56 +0.0
546,450 + COO64_RS05225 0.56 +0.9
546,450 + COO64_RS05225 0.56 -1.4
546,451 - COO64_RS05225 0.57 +0.5
546,451 - COO64_RS05225 0.57 +0.5
546,560 + +1.6
546,625 - -1.6
546,631 - -0.5
546,710 - +0.0
546,751 - COO64_RS05230 0.17 -0.9
546,881 + COO64_RS05230 0.47 -0.7
546,881 + COO64_RS05230 0.47 +0.8
546,882 - COO64_RS05230 0.47 +1.7
546,882 - COO64_RS05230 0.47 -0.2
546,882 - COO64_RS05230 0.47 -0.8
547,034 + COO64_RS05230 0.82 +0.8
547,034 + COO64_RS05230 0.82 +0.8
547,035 - COO64_RS05230 0.83 -1.2
547,035 - COO64_RS05230 0.83 -0.8
547,205 + -0.2
547,205 + -1.2
547,206 - +1.9
547,206 - -0.4
547,206 - +0.2
547,206 - -0.8
547,206 - -0.7
547,206 - -0.8
547,206 - -0.9
547,287 + COO64_RS05235 0.35 -2.0
547,287 + COO64_RS05235 0.35 -0.5
547,299 - COO64_RS05235 0.40 -1.8
547,299 - COO64_RS05235 0.40 -1.2
547,299 - COO64_RS05235 0.40 -0.2
547,299 - COO64_RS05235 0.40 -0.8
547,299 - COO64_RS05235 0.40 -1.1
547,329 + COO64_RS05235 0.53 -0.1
547,442 + -0.4
547,442 + -1.4
547,442 + -1.1
547,442 + +0.4
547,442 + -0.0
547,443 - -0.8
547,443 - -0.9
547,443 - +0.3
547,443 - -1.4
547,443 - +0.7
547,460 + -0.1
547,461 - +0.4
547,474 + +0.1
547,474 + -0.7
547,475 - -0.7
547,475 - -0.3
547,475 - -0.1
547,479 + -0.1
547,479 + +0.9
547,480 - +1.3
547,480 - -1.0
547,480 - +0.2
547,582 + +0.3
547,582 + +0.7
547,583 - -2.3
547,669 + -0.5
547,669 + +0.0
547,669 + -0.2
547,706 + +0.2
547,706 + +0.8
547,706 + +0.3
547,707 - +0.0
547,707 - -0.6
547,735 + +0.4
547,959 + COO64_RS05240 0.17 -0.9
548,138 + COO64_RS05240 0.26 -0.5
548,139 - COO64_RS05240 0.27 +0.6
548,375 + COO64_RS05240 0.39 -0.1
548,375 + COO64_RS05240 0.39 -0.1
548,375 + COO64_RS05240 0.39 -0.3
548,375 + COO64_RS05240 0.39 +0.4
548,375 + COO64_RS05240 0.39 -0.1
548,376 - COO64_RS05240 0.39 -0.3
548,376 - COO64_RS05240 0.39 +0.9
548,376 - COO64_RS05240 0.39 +1.5

Or see this region's nucleotide sequence