Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hexR and zwf are separated by 213 nucleotides zwf and pgl overlap by 14 nucleotides pgl and COO64_RS04600 are separated by 17 nucleotides
COO64_RS04585: hexR - DNA-binding transcriptional regulator HexR, at 398,200 to 399,060
hexR
COO64_RS04590: zwf - glucose-6-phosphate dehydrogenase, at 399,274 to 400,743
zwf
COO64_RS04595: pgl - 6-phosphogluconolactonase, at 400,730 to 401,443
pgl
COO64_RS04600: COO64_RS04600 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 401,461 to 402,135
_RS04600
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1 at 398.355 kb on + strand, within hexR at 398.355 kb on + strand, within hexR at 398.355 kb on + strand, within hexR at 398.355 kb on + strand, within hexR at 398.356 kb on - strand, within hexR at 398.356 kb on - strand, within hexR at 398.356 kb on - strand, within hexR at 398.356 kb on - strand, within hexR at 398.356 kb on - strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.357 kb on + strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.358 kb on - strand, within hexR at 398.444 kb on - strand, within hexR at 398.777 kb on + strand, within hexR at 398.777 kb on + strand, within hexR at 398.777 kb on + strand, within hexR at 398.777 kb on + strand, within hexR at 398.777 kb on + strand, within hexR at 398.777 kb on + strand, within hexR at 398.778 kb on - strand, within hexR at 398.778 kb on - strand, within hexR at 398.778 kb on - strand, within hexR at 398.819 kb on + strand, within hexR at 398.819 kb on + strand, within hexR at 398.819 kb on + strand, within hexR at 398.820 kb on - strand, within hexR at 399.000 kb on + strand at 399.136 kb on + strand at 399.137 kb on - strand at 399.137 kb on - strand at 399.141 kb on + strand at 399.142 kb on - strand at 399.142 kb on - strand at 399.142 kb on - strand at 399.142 kb on - strand at 399.202 kb on + strand at 399.205 kb on + strand at 399.205 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.210 kb on + strand at 399.211 kb on - strand at 399.239 kb on + strand at 399.239 kb on + strand at 399.246 kb on - strand at 399.258 kb on + strand at 399.347 kb on + strand at 399.348 kb on - strand at 399.348 kb on - strand at 399.361 kb on + strand at 399.361 kb on + strand at 399.361 kb on + strand at 399.362 kb on - strand at 399.455 kb on + strand, within zwf at 399.535 kb on + strand, within zwf at 399.535 kb on + strand, within zwf at 399.536 kb on - strand, within zwf at 399.568 kb on + strand, within zwf at 399.568 kb on + strand, within zwf at 399.568 kb on + strand, within zwf at 399.569 kb on - strand, within zwf at 399.569 kb on - strand, within zwf at 399.616 kb on + strand, within zwf at 399.640 kb on + strand, within zwf at 399.641 kb on - strand, within zwf at 399.641 kb on - strand, within zwf at 399.641 kb on - strand, within zwf at 399.641 kb on - strand, within zwf at 399.763 kb on + strand, within zwf at 399.764 kb on - strand, within zwf at 399.764 kb on - strand, within zwf at 399.784 kb on + strand, within zwf at 399.799 kb on + strand, within zwf at 399.799 kb on + strand, within zwf at 399.799 kb on + strand, within zwf at 399.799 kb on + strand, within zwf at 399.800 kb on - strand, within zwf at 399.800 kb on - strand, within zwf at 399.941 kb on - strand, within zwf at 400.045 kb on - strand, within zwf at 400.129 kb on + strand, within zwf at 400.129 kb on + strand, within zwf at 400.129 kb on + strand, within zwf at 400.130 kb on - strand, within zwf at 400.130 kb on - strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.339 kb on + strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.340 kb on - strand, within zwf at 400.410 kb on + strand, within zwf at 400.410 kb on + strand, within zwf at 400.411 kb on - strand, within zwf at 400.411 kb on - strand, within zwf at 400.411 kb on - strand, within zwf at 400.411 kb on - strand, within zwf at 400.411 kb on - strand, within zwf at 400.529 kb on - strand, within zwf at 400.529 kb on - strand, within zwf at 400.729 kb on + strand at 400.730 kb on - strand at 400.852 kb on + strand, within pgl at 400.852 kb on + strand, within pgl at 401.139 kb on + strand, within pgl at 401.139 kb on + strand, within pgl at 401.409 kb on + strand at 401.409 kb on + strand at 401.409 kb on + strand at 401.410 kb on - strand at 401.410 kb on - strand at 401.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 398,355 + hexR COO64_RS04585 0.18 +0.7 398,355 + hexR COO64_RS04585 0.18 -0.3 398,355 + hexR COO64_RS04585 0.18 -0.6 398,355 + hexR COO64_RS04585 0.18 +1.3 398,356 - hexR COO64_RS04585 0.18 +0.0 398,356 - hexR COO64_RS04585 0.18 -0.5 398,356 - hexR COO64_RS04585 0.18 +0.7 398,356 - hexR COO64_RS04585 0.18 -0.2 398,356 - hexR COO64_RS04585 0.18 -0.8 398,357 + hexR COO64_RS04585 0.18 -0.1 398,357 + hexR COO64_RS04585 0.18 +0.6 398,357 + hexR COO64_RS04585 0.18 -0.9 398,357 + hexR COO64_RS04585 0.18 -0.3 398,357 + hexR COO64_RS04585 0.18 -0.9 398,357 + hexR COO64_RS04585 0.18 -1.0 398,357 + hexR COO64_RS04585 0.18 -0.2 398,357 + hexR COO64_RS04585 0.18 -0.1 398,357 + hexR COO64_RS04585 0.18 +0.1 398,357 + hexR COO64_RS04585 0.18 +0.3 398,357 + hexR COO64_RS04585 0.18 -1.2 398,357 + hexR COO64_RS04585 0.18 +1.5 398,357 + hexR COO64_RS04585 0.18 +0.3 398,357 + hexR COO64_RS04585 0.18 -0.1 398,357 + hexR COO64_RS04585 0.18 -0.8 398,357 + hexR COO64_RS04585 0.18 -0.4 398,357 + hexR COO64_RS04585 0.18 +0.6 398,357 + hexR COO64_RS04585 0.18 +0.8 398,357 + hexR COO64_RS04585 0.18 -0.6 398,357 + hexR COO64_RS04585 0.18 -1.0 398,357 + hexR COO64_RS04585 0.18 -1.3 398,357 + hexR COO64_RS04585 0.18 +0.2 398,357 + hexR COO64_RS04585 0.18 +1.4 398,357 + hexR COO64_RS04585 0.18 -0.1 398,357 + hexR COO64_RS04585 0.18 -1.3 398,357 + hexR COO64_RS04585 0.18 -2.1 398,357 + hexR COO64_RS04585 0.18 -0.8 398,357 + hexR COO64_RS04585 0.18 -0.4 398,357 + hexR COO64_RS04585 0.18 +0.6 398,357 + hexR COO64_RS04585 0.18 -0.6 398,357 + hexR COO64_RS04585 0.18 -0.3 398,357 + hexR COO64_RS04585 0.18 +0.2 398,357 + hexR COO64_RS04585 0.18 +0.3 398,358 - hexR COO64_RS04585 0.18 -1.3 398,358 - hexR COO64_RS04585 0.18 -1.0 398,358 - hexR COO64_RS04585 0.18 +0.4 398,358 - hexR COO64_RS04585 0.18 -0.8 398,358 - hexR COO64_RS04585 0.18 -0.5 398,358 - hexR COO64_RS04585 0.18 +0.8 398,358 - hexR COO64_RS04585 0.18 +0.4 398,358 - hexR COO64_RS04585 0.18 +0.6 398,358 - hexR COO64_RS04585 0.18 +0.3 398,358 - hexR COO64_RS04585 0.18 -0.3 398,358 - hexR COO64_RS04585 0.18 -0.1 398,358 - hexR COO64_RS04585 0.18 -1.1 398,358 - hexR COO64_RS04585 0.18 +0.8 398,358 - hexR COO64_RS04585 0.18 -0.7 398,358 - hexR COO64_RS04585 0.18 +0.6 398,358 - hexR COO64_RS04585 0.18 -1.0 398,358 - hexR COO64_RS04585 0.18 -0.0 398,358 - hexR COO64_RS04585 0.18 -0.3 398,358 - hexR COO64_RS04585 0.18 +0.7 398,358 - hexR COO64_RS04585 0.18 -0.7 398,358 - hexR COO64_RS04585 0.18 -0.1 398,358 - hexR COO64_RS04585 0.18 +0.7 398,358 - hexR COO64_RS04585 0.18 +1.3 398,358 - hexR COO64_RS04585 0.18 -0.2 398,358 - hexR COO64_RS04585 0.18 -1.3 398,358 - hexR COO64_RS04585 0.18 +0.3 398,358 - hexR COO64_RS04585 0.18 +0.0 398,358 - hexR COO64_RS04585 0.18 +1.0 398,358 - hexR COO64_RS04585 0.18 -0.9 398,358 - hexR COO64_RS04585 0.18 +1.0 398,358 - hexR COO64_RS04585 0.18 -0.3 398,358 - hexR COO64_RS04585 0.18 -1.5 398,358 - hexR COO64_RS04585 0.18 +0.6 398,358 - hexR COO64_RS04585 0.18 -1.1 398,358 - hexR COO64_RS04585 0.18 -0.6 398,358 - hexR COO64_RS04585 0.18 -1.0 398,444 - hexR COO64_RS04585 0.28 -0.2 398,777 + hexR COO64_RS04585 0.67 -0.7 398,777 + hexR COO64_RS04585 0.67 +1.0 398,777 + hexR COO64_RS04585 0.67 -1.1 398,777 + hexR COO64_RS04585 0.67 +0.9 398,777 + hexR COO64_RS04585 0.67 +1.1 398,777 + hexR COO64_RS04585 0.67 -0.7 398,778 - hexR COO64_RS04585 0.67 +0.6 398,778 - hexR COO64_RS04585 0.67 -0.5 398,778 - hexR COO64_RS04585 0.67 -0.5 398,819 + hexR COO64_RS04585 0.72 -1.6 398,819 + hexR COO64_RS04585 0.72 -0.4 398,819 + hexR COO64_RS04585 0.72 -1.6 398,820 - hexR COO64_RS04585 0.72 -1.9 399,000 + -0.5 399,136 + -0.6 399,137 - -0.1 399,137 - +0.1 399,141 + -0.4 399,142 - -0.4 399,142 - +0.6 399,142 - -0.5 399,142 - -1.8 399,202 + -0.7 399,205 + -0.6 399,205 + +0.1 399,210 + -0.0 399,210 + -0.5 399,210 + -0.5 399,210 + -0.3 399,210 + -0.3 399,211 - -1.3 399,239 + +0.0 399,239 + -0.6 399,246 - -0.1 399,258 + -1.8 399,347 + -2.2 399,348 - -0.7 399,348 - -1.8 399,361 + -0.1 399,361 + -2.4 399,361 + +0.2 399,362 - -1.8 399,455 + zwf COO64_RS04590 0.12 -0.9 399,535 + zwf COO64_RS04590 0.18 +0.0 399,535 + zwf COO64_RS04590 0.18 -0.3 399,536 - zwf COO64_RS04590 0.18 -0.7 399,568 + zwf COO64_RS04590 0.20 -1.5 399,568 + zwf COO64_RS04590 0.20 -1.2 399,568 + zwf COO64_RS04590 0.20 +1.0 399,569 - zwf COO64_RS04590 0.20 -1.0 399,569 - zwf COO64_RS04590 0.20 -1.5 399,616 + zwf COO64_RS04590 0.23 -1.3 399,640 + zwf COO64_RS04590 0.25 -1.0 399,641 - zwf COO64_RS04590 0.25 -1.3 399,641 - zwf COO64_RS04590 0.25 -1.7 399,641 - zwf COO64_RS04590 0.25 -0.2 399,641 - zwf COO64_RS04590 0.25 -1.3 399,763 + zwf COO64_RS04590 0.33 -1.6 399,764 - zwf COO64_RS04590 0.33 -1.8 399,764 - zwf COO64_RS04590 0.33 -0.3 399,784 + zwf COO64_RS04590 0.35 -2.2 399,799 + zwf COO64_RS04590 0.36 -0.3 399,799 + zwf COO64_RS04590 0.36 +0.5 399,799 + zwf COO64_RS04590 0.36 -0.3 399,799 + zwf COO64_RS04590 0.36 -1.0 399,800 - zwf COO64_RS04590 0.36 -1.0 399,800 - zwf COO64_RS04590 0.36 -0.8 399,941 - zwf COO64_RS04590 0.45 -0.2 400,045 - zwf COO64_RS04590 0.52 -1.8 400,129 + zwf COO64_RS04590 0.58 +1.1 400,129 + zwf COO64_RS04590 0.58 +0.5 400,129 + zwf COO64_RS04590 0.58 +0.1 400,130 - zwf COO64_RS04590 0.58 -0.7 400,130 - zwf COO64_RS04590 0.58 -0.8 400,339 + zwf COO64_RS04590 0.72 -0.1 400,339 + zwf COO64_RS04590 0.72 +1.3 400,339 + zwf COO64_RS04590 0.72 -1.6 400,339 + zwf COO64_RS04590 0.72 +0.2 400,339 + zwf COO64_RS04590 0.72 -0.2 400,339 + zwf COO64_RS04590 0.72 -0.3 400,339 + zwf COO64_RS04590 0.72 -0.3 400,340 - zwf COO64_RS04590 0.73 -0.7 400,340 - zwf COO64_RS04590 0.73 +0.2 400,340 - zwf COO64_RS04590 0.73 -1.2 400,340 - zwf COO64_RS04590 0.73 -1.6 400,340 - zwf COO64_RS04590 0.73 -0.6 400,340 - zwf COO64_RS04590 0.73 -0.8 400,340 - zwf COO64_RS04590 0.73 +0.4 400,340 - zwf COO64_RS04590 0.73 -1.4 400,340 - zwf COO64_RS04590 0.73 -0.6 400,340 - zwf COO64_RS04590 0.73 -1.8 400,340 - zwf COO64_RS04590 0.73 -0.9 400,340 - zwf COO64_RS04590 0.73 -0.3 400,410 + zwf COO64_RS04590 0.77 -0.5 400,410 + zwf COO64_RS04590 0.77 +0.3 400,411 - zwf COO64_RS04590 0.77 -0.1 400,411 - zwf COO64_RS04590 0.77 +0.2 400,411 - zwf COO64_RS04590 0.77 +0.0 400,411 - zwf COO64_RS04590 0.77 -0.4 400,411 - zwf COO64_RS04590 0.77 +0.0 400,529 - zwf COO64_RS04590 0.85 -1.2 400,529 - zwf COO64_RS04590 0.85 +0.4 400,729 + -0.4 400,730 - -1.6 400,852 + pgl COO64_RS04595 0.17 -0.6 400,852 + pgl COO64_RS04595 0.17 -1.0 401,139 + pgl COO64_RS04595 0.57 -0.1 401,139 + pgl COO64_RS04595 0.57 -0.8 401,409 + -0.6 401,409 + +0.4 401,409 + -0.3 401,410 - +0.4 401,410 - -0.8 401,461 - -0.2
Or see this region's nucleotide sequence