Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejK and COO64_RS04390 are separated by 408 nucleotides COO64_RS04390 and rlmF are separated by 50 nucleotides
COO64_RS04385: yejK - nucleoid-associated protein YejK, at 348,939 to 349,946
yejK
COO64_RS04390: COO64_RS04390 - HU family DNA-binding protein, at 350,355 to 350,636
_RS04390
COO64_RS04395: rlmF - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 350,687 to 351,649
rlmF
Position (kb) 350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 349.396 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.441 kb on + strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.442 kb on - strand, within yejK at 349.594 kb on + strand, within yejK at 349.594 kb on + strand, within yejK at 349.594 kb on + strand, within yejK at 349.595 kb on - strand, within yejK at 349.595 kb on - strand, within yejK at 349.615 kb on + strand, within yejK at 349.616 kb on - strand, within yejK at 349.729 kb on + strand, within yejK at 349.729 kb on + strand, within yejK at 349.729 kb on + strand, within yejK at 349.730 kb on - strand, within yejK at 349.810 kb on + strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.811 kb on - strand, within yejK at 349.896 kb on - strand at 350.001 kb on + strand at 350.002 kb on - strand at 350.043 kb on + strand at 350.043 kb on + strand at 350.043 kb on + strand at 350.044 kb on - strand at 350.044 kb on - strand at 350.044 kb on - strand at 350.133 kb on - strand at 350.136 kb on + strand at 350.136 kb on + strand at 350.136 kb on + strand at 350.136 kb on + strand at 350.140 kb on + strand at 350.140 kb on + strand at 350.141 kb on - strand at 350.152 kb on - strand at 350.230 kb on + strand at 350.231 kb on - strand at 350.231 kb on - strand at 350.234 kb on + strand at 350.235 kb on - strand at 350.235 kb on - strand at 350.235 kb on - strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.238 kb on + strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.242 kb on + strand at 350.242 kb on + strand at 350.243 kb on - strand at 350.243 kb on - strand at 350.243 kb on - strand at 350.243 kb on - strand at 350.262 kb on - strand at 350.262 kb on - strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.309 kb on + strand at 350.310 kb on - strand at 350.310 kb on - strand at 350.310 kb on - strand at 350.310 kb on - strand at 350.310 kb on - strand at 350.310 kb on - strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.321 kb on + strand at 350.322 kb on - strand at 350.322 kb on - strand at 350.399 kb on + strand, within COO64_RS04390 at 350.399 kb on + strand, within COO64_RS04390 at 350.400 kb on - strand, within COO64_RS04390 at 350.626 kb on + strand at 350.626 kb on + strand at 350.626 kb on + strand at 350.626 kb on + strand at 350.626 kb on + strand at 350.627 kb on - strand at 350.627 kb on - strand at 350.634 kb on + strand at 350.634 kb on + strand at 350.634 kb on + strand at 350.634 kb on + strand at 350.634 kb on + strand at 350.635 kb on - strand at 350.635 kb on - strand at 350.635 kb on - strand at 350.635 kb on - strand at 350.640 kb on + strand at 350.640 kb on + strand at 350.641 kb on - strand at 350.689 kb on - strand at 350.689 kb on - strand at 351.285 kb on + strand, within rlmF at 351.286 kb on - strand, within rlmF at 351.286 kb on - strand, within rlmF at 351.286 kb on - strand, within rlmF at 351.390 kb on + strand, within rlmF at 351.390 kb on + strand, within rlmF at 351.390 kb on + strand, within rlmF at 351.390 kb on + strand, within rlmF at 351.390 kb on + strand, within rlmF at 351.391 kb on - strand, within rlmF at 351.419 kb on + strand, within rlmF at 351.419 kb on + strand, within rlmF at 351.419 kb on + strand, within rlmF at 351.419 kb on + strand, within rlmF at 351.419 kb on + strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.420 kb on - strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.423 kb on + strand, within rlmF at 351.424 kb on - strand, within rlmF at 351.424 kb on - strand, within rlmF at 351.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 349,396 + yejK COO64_RS04385 0.45 -0.5 349,441 + yejK COO64_RS04385 0.50 -1.0 349,441 + yejK COO64_RS04385 0.50 -0.1 349,441 + yejK COO64_RS04385 0.50 +0.7 349,441 + yejK COO64_RS04385 0.50 +0.6 349,441 + yejK COO64_RS04385 0.50 -0.6 349,441 + yejK COO64_RS04385 0.50 +0.4 349,441 + yejK COO64_RS04385 0.50 -0.6 349,441 + yejK COO64_RS04385 0.50 +0.5 349,441 + yejK COO64_RS04385 0.50 -1.0 349,441 + yejK COO64_RS04385 0.50 -0.7 349,442 - yejK COO64_RS04385 0.50 -0.8 349,442 - yejK COO64_RS04385 0.50 -0.2 349,442 - yejK COO64_RS04385 0.50 -0.4 349,442 - yejK COO64_RS04385 0.50 +0.3 349,442 - yejK COO64_RS04385 0.50 +0.1 349,442 - yejK COO64_RS04385 0.50 -2.0 349,442 - yejK COO64_RS04385 0.50 +0.4 349,594 + yejK COO64_RS04385 0.65 +0.3 349,594 + yejK COO64_RS04385 0.65 -0.2 349,594 + yejK COO64_RS04385 0.65 +0.3 349,595 - yejK COO64_RS04385 0.65 +0.2 349,595 - yejK COO64_RS04385 0.65 +0.5 349,615 + yejK COO64_RS04385 0.67 +0.6 349,616 - yejK COO64_RS04385 0.67 +0.2 349,729 + yejK COO64_RS04385 0.78 +0.3 349,729 + yejK COO64_RS04385 0.78 -0.1 349,729 + yejK COO64_RS04385 0.78 +0.2 349,730 - yejK COO64_RS04385 0.78 -0.6 349,810 + yejK COO64_RS04385 0.86 +0.5 349,811 - yejK COO64_RS04385 0.87 +0.8 349,811 - yejK COO64_RS04385 0.87 +0.6 349,811 - yejK COO64_RS04385 0.87 -0.1 349,811 - yejK COO64_RS04385 0.87 -0.3 349,811 - yejK COO64_RS04385 0.87 -1.7 349,811 - yejK COO64_RS04385 0.87 -1.1 349,811 - yejK COO64_RS04385 0.87 -0.1 349,811 - yejK COO64_RS04385 0.87 +0.5 349,896 - +0.2 350,001 + -0.1 350,002 - +0.1 350,043 + +0.6 350,043 + +0.1 350,043 + -0.9 350,044 - -1.0 350,044 - +1.5 350,044 - +0.2 350,133 - +1.0 350,136 + +0.0 350,136 + -1.0 350,136 + +0.2 350,136 + -0.7 350,140 + -0.4 350,140 + +0.4 350,141 - +1.0 350,152 - -0.5 350,230 + -0.2 350,231 - -0.9 350,231 - -1.1 350,234 + +0.6 350,235 - -0.3 350,235 - -0.1 350,235 - +0.2 350,238 + -0.8 350,238 + +0.1 350,238 + -0.9 350,238 + -1.8 350,238 + -1.9 350,238 + +0.7 350,238 + -0.5 350,238 + +0.4 350,238 + +0.7 350,238 + -0.2 350,238 + -0.0 350,238 + +0.7 350,238 + -0.2 350,238 + +0.2 350,239 - +0.2 350,239 - +0.3 350,239 - +0.0 350,239 - -1.1 350,239 - -1.1 350,239 - +0.4 350,239 - -0.5 350,239 - -0.4 350,239 - -1.0 350,239 - +0.0 350,242 + +0.1 350,242 + +0.1 350,243 - -0.1 350,243 - -1.6 350,243 - -0.3 350,243 - -0.8 350,262 - -1.3 350,262 - -0.3 350,309 + +0.4 350,309 + +0.1 350,309 + -0.5 350,309 + +0.9 350,309 + -0.1 350,309 + -2.0 350,309 + -0.4 350,309 + +0.0 350,309 + +0.4 350,309 + -0.0 350,309 + +0.3 350,310 - -1.0 350,310 - +0.0 350,310 - -0.8 350,310 - -2.1 350,310 - -1.1 350,310 - -2.0 350,321 + -0.2 350,321 + -1.0 350,321 + -1.1 350,321 + -1.3 350,321 + +0.4 350,321 + +0.9 350,321 + -0.0 350,322 - +1.0 350,322 - -2.8 350,399 + COO64_RS04390 0.16 +0.4 350,399 + COO64_RS04390 0.16 +0.9 350,400 - COO64_RS04390 0.16 -1.2 350,626 + -0.3 350,626 + +0.2 350,626 + +1.3 350,626 + +0.2 350,626 + -1.1 350,627 - -1.2 350,627 - +0.9 350,634 + -0.6 350,634 + -0.8 350,634 + +0.0 350,634 + +0.3 350,634 + -0.4 350,635 - +0.4 350,635 - -1.4 350,635 - -0.7 350,635 - -2.4 350,640 + -0.5 350,640 + -1.7 350,641 - -0.4 350,689 - -0.3 350,689 - +0.1 351,285 + rlmF COO64_RS04395 0.62 +0.0 351,286 - rlmF COO64_RS04395 0.62 -0.6 351,286 - rlmF COO64_RS04395 0.62 -1.1 351,286 - rlmF COO64_RS04395 0.62 +0.5 351,390 + rlmF COO64_RS04395 0.73 -0.2 351,390 + rlmF COO64_RS04395 0.73 -1.1 351,390 + rlmF COO64_RS04395 0.73 -0.3 351,390 + rlmF COO64_RS04395 0.73 -0.8 351,390 + rlmF COO64_RS04395 0.73 +0.2 351,391 - rlmF COO64_RS04395 0.73 +0.4 351,419 + rlmF COO64_RS04395 0.76 +0.0 351,419 + rlmF COO64_RS04395 0.76 -1.8 351,419 + rlmF COO64_RS04395 0.76 -0.4 351,419 + rlmF COO64_RS04395 0.76 -0.8 351,419 + rlmF COO64_RS04395 0.76 -0.3 351,420 - rlmF COO64_RS04395 0.76 +1.1 351,420 - rlmF COO64_RS04395 0.76 +0.6 351,420 - rlmF COO64_RS04395 0.76 -0.3 351,420 - rlmF COO64_RS04395 0.76 +0.2 351,420 - rlmF COO64_RS04395 0.76 +0.1 351,420 - rlmF COO64_RS04395 0.76 -0.6 351,420 - rlmF COO64_RS04395 0.76 -0.3 351,420 - rlmF COO64_RS04395 0.76 +0.0 351,420 - rlmF COO64_RS04395 0.76 -0.1 351,420 - rlmF COO64_RS04395 0.76 +0.2 351,423 + rlmF COO64_RS04395 0.76 -1.5 351,423 + rlmF COO64_RS04395 0.76 -2.1 351,423 + rlmF COO64_RS04395 0.76 -0.3 351,423 + rlmF COO64_RS04395 0.76 +0.2 351,423 + rlmF COO64_RS04395 0.76 -1.7 351,423 + rlmF COO64_RS04395 0.76 +0.3 351,423 + rlmF COO64_RS04395 0.76 -1.0 351,424 - rlmF COO64_RS04395 0.77 +0.1 351,424 - rlmF COO64_RS04395 0.77 +0.4 351,595 - -0.1
Or see this region's nucleotide sequence