Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS04250 and COO64_RS04255 are separated by 1 nucleotides COO64_RS04255 and COO64_RS04260 are separated by 11 nucleotides COO64_RS04260 and COO64_RS04265 are separated by 15 nucleotides COO64_RS04265 and rapZ are separated by 20 nucleotides
COO64_RS04250: COO64_RS04250 - hypothetical protein, at 328,700 to 329,161
_RS04250
COO64_RS04255: COO64_RS04255 - superoxide dismutase, at 329,163 to 329,774
_RS04255
COO64_RS04260: COO64_RS04260 - ZIP family metal transporter, at 329,786 to 330,679
_RS04260
COO64_RS04265: COO64_RS04265 - HPr family phosphocarrier protein, at 330,695 to 330,967
_RS04265
COO64_RS04270: rapZ - RNase adapter RapZ, at 330,988 to 331,842
rapZ
Position (kb) 329
330
331 Strain fitness (log2 ratio) -2
-1
0
1
2 at 328.867 kb on + strand, within COO64_RS04250 at 328.919 kb on + strand, within COO64_RS04250 at 328.919 kb on + strand, within COO64_RS04250 at 328.920 kb on - strand, within COO64_RS04250 at 328.920 kb on - strand, within COO64_RS04250 at 328.920 kb on - strand, within COO64_RS04250 at 329.018 kb on + strand, within COO64_RS04250 at 329.018 kb on + strand, within COO64_RS04250 at 329.018 kb on + strand, within COO64_RS04250 at 329.018 kb on + strand, within COO64_RS04250 at 329.019 kb on - strand, within COO64_RS04250 at 329.019 kb on - strand, within COO64_RS04250 at 329.038 kb on + strand, within COO64_RS04250 at 329.082 kb on - strand, within COO64_RS04250 at 329.143 kb on - strand at 329.162 kb on + strand at 329.162 kb on + strand at 329.162 kb on + strand at 329.169 kb on + strand at 329.169 kb on + strand at 329.169 kb on + strand at 329.169 kb on + strand at 329.169 kb on + strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.170 kb on - strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.171 kb on + strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.172 kb on - strand at 329.191 kb on - strand at 329.196 kb on + strand at 329.265 kb on + strand, within COO64_RS04255 at 329.265 kb on + strand, within COO64_RS04255 at 329.265 kb on + strand, within COO64_RS04255 at 329.265 kb on + strand, within COO64_RS04255 at 329.265 kb on + strand, within COO64_RS04255 at 329.265 kb on + strand, within COO64_RS04255 at 329.266 kb on - strand, within COO64_RS04255 at 329.266 kb on - strand, within COO64_RS04255 at 329.266 kb on - strand, within COO64_RS04255 at 329.290 kb on + strand, within COO64_RS04255 at 329.290 kb on + strand, within COO64_RS04255 at 329.290 kb on + strand, within COO64_RS04255 at 329.291 kb on - strand, within COO64_RS04255 at 329.305 kb on - strand, within COO64_RS04255 at 329.517 kb on - strand, within COO64_RS04255 at 329.670 kb on + strand, within COO64_RS04255 at 329.670 kb on + strand, within COO64_RS04255 at 329.670 kb on + strand, within COO64_RS04255 at 329.670 kb on + strand, within COO64_RS04255 at 329.671 kb on - strand, within COO64_RS04255 at 329.671 kb on - strand, within COO64_RS04255 at 329.671 kb on - strand, within COO64_RS04255 at 329.671 kb on - strand, within COO64_RS04255 at 329.673 kb on + strand, within COO64_RS04255 at 329.673 kb on + strand, within COO64_RS04255 at 329.673 kb on + strand, within COO64_RS04255 at 329.674 kb on - strand, within COO64_RS04255 at 329.674 kb on - strand, within COO64_RS04255 at 329.674 kb on - strand, within COO64_RS04255 at 329.674 kb on - strand, within COO64_RS04255 at 329.674 kb on - strand, within COO64_RS04255 at 329.682 kb on + strand, within COO64_RS04255 at 329.683 kb on - strand, within COO64_RS04255 at 329.704 kb on - strand, within COO64_RS04255 at 329.718 kb on + strand at 329.718 kb on + strand at 329.719 kb on - strand at 329.719 kb on - strand at 329.719 kb on - strand at 329.719 kb on - strand at 329.719 kb on - strand at 329.744 kb on - strand at 329.744 kb on - strand at 329.786 kb on - strand at 329.786 kb on - strand at 330.112 kb on + strand, within COO64_RS04260 at 330.170 kb on + strand, within COO64_RS04260 at 330.171 kb on - strand, within COO64_RS04260 at 330.171 kb on - strand, within COO64_RS04260 at 330.171 kb on - strand, within COO64_RS04260 at 330.283 kb on + strand, within COO64_RS04260 at 330.283 kb on + strand, within COO64_RS04260 at 330.697 kb on - strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.714 kb on + strand at 330.715 kb on - strand at 330.715 kb on - strand at 330.715 kb on - strand at 330.856 kb on + strand, within COO64_RS04265 at 330.899 kb on + strand, within COO64_RS04265 at 330.899 kb on + strand, within COO64_RS04265 at 330.899 kb on + strand, within COO64_RS04265 at 330.900 kb on - strand, within COO64_RS04265 at 331.061 kb on + strand at 331.062 kb on - strand at 331.062 kb on - strand at 331.109 kb on + strand, within rapZ at 331.109 kb on + strand, within rapZ at 331.109 kb on + strand, within rapZ at 331.110 kb on - strand, within rapZ at 331.110 kb on - strand, within rapZ at 331.110 kb on - strand, within rapZ at 331.110 kb on - strand, within rapZ at 331.110 kb on - strand, within rapZ at 331.154 kb on + strand, within rapZ at 331.154 kb on + strand, within rapZ at 331.154 kb on + strand, within rapZ at 331.154 kb on + strand, within rapZ at 331.155 kb on - strand, within rapZ at 331.155 kb on - strand, within rapZ at 331.155 kb on - strand, within rapZ at 331.206 kb on - strand, within rapZ at 331.206 kb on - strand, within rapZ at 331.206 kb on - strand, within rapZ at 331.404 kb on - strand, within rapZ at 331.578 kb on - strand, within rapZ at 331.578 kb on - strand, within rapZ
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 328,867 + COO64_RS04250 0.36 -0.1 328,919 + COO64_RS04250 0.47 -0.4 328,919 + COO64_RS04250 0.47 +0.1 328,920 - COO64_RS04250 0.48 -2.6 328,920 - COO64_RS04250 0.48 +0.0 328,920 - COO64_RS04250 0.48 -0.1 329,018 + COO64_RS04250 0.69 -1.1 329,018 + COO64_RS04250 0.69 -0.2 329,018 + COO64_RS04250 0.69 +0.3 329,018 + COO64_RS04250 0.69 +0.5 329,019 - COO64_RS04250 0.69 +0.2 329,019 - COO64_RS04250 0.69 -0.3 329,038 + COO64_RS04250 0.73 -0.1 329,082 - COO64_RS04250 0.83 -2.4 329,143 - -1.4 329,162 + +0.0 329,162 + -0.0 329,162 + +1.3 329,169 + +1.0 329,169 + +0.9 329,169 + +0.4 329,169 + +0.0 329,169 + -0.6 329,170 - +0.4 329,170 - +0.8 329,170 - +0.4 329,170 - +0.1 329,170 - +0.1 329,170 - +0.4 329,170 - -0.3 329,170 - +2.0 329,171 + +0.1 329,171 + +0.4 329,171 + -1.0 329,171 + +1.4 329,171 + +0.2 329,171 + +0.2 329,171 + -0.2 329,171 + -0.6 329,171 + -1.3 329,171 + -0.1 329,171 + +0.4 329,171 + -0.2 329,171 + +0.6 329,171 + -1.9 329,172 - +0.1 329,172 - -0.8 329,172 - -0.7 329,172 - -0.8 329,172 - +0.3 329,172 - -0.1 329,172 - -0.2 329,191 - -0.5 329,196 + +0.6 329,265 + COO64_RS04255 0.17 +0.8 329,265 + COO64_RS04255 0.17 +0.8 329,265 + COO64_RS04255 0.17 +0.8 329,265 + COO64_RS04255 0.17 +0.0 329,265 + COO64_RS04255 0.17 +0.6 329,265 + COO64_RS04255 0.17 -0.5 329,266 - COO64_RS04255 0.17 +0.6 329,266 - COO64_RS04255 0.17 +0.7 329,266 - COO64_RS04255 0.17 -0.3 329,290 + COO64_RS04255 0.21 +0.6 329,290 + COO64_RS04255 0.21 -0.3 329,290 + COO64_RS04255 0.21 +0.0 329,291 - COO64_RS04255 0.21 +0.1 329,305 - COO64_RS04255 0.23 -0.6 329,517 - COO64_RS04255 0.58 -0.1 329,670 + COO64_RS04255 0.83 -0.4 329,670 + COO64_RS04255 0.83 +0.3 329,670 + COO64_RS04255 0.83 +0.2 329,670 + COO64_RS04255 0.83 +0.3 329,671 - COO64_RS04255 0.83 +1.3 329,671 - COO64_RS04255 0.83 +0.3 329,671 - COO64_RS04255 0.83 -0.6 329,671 - COO64_RS04255 0.83 -0.4 329,673 + COO64_RS04255 0.83 +0.6 329,673 + COO64_RS04255 0.83 +0.0 329,673 + COO64_RS04255 0.83 +0.4 329,674 - COO64_RS04255 0.83 -0.8 329,674 - COO64_RS04255 0.83 -0.2 329,674 - COO64_RS04255 0.83 +1.1 329,674 - COO64_RS04255 0.83 +0.3 329,674 - COO64_RS04255 0.83 -2.3 329,682 + COO64_RS04255 0.85 -0.3 329,683 - COO64_RS04255 0.85 -0.1 329,704 - COO64_RS04255 0.88 +1.1 329,718 + +0.3 329,718 + +0.5 329,719 - +0.2 329,719 - +0.3 329,719 - -0.2 329,719 - -0.6 329,719 - -0.2 329,744 - -0.2 329,744 - +0.1 329,786 - -0.2 329,786 - +0.4 330,112 + COO64_RS04260 0.36 -0.7 330,170 + COO64_RS04260 0.43 -1.2 330,171 - COO64_RS04260 0.43 -0.1 330,171 - COO64_RS04260 0.43 -0.7 330,171 - COO64_RS04260 0.43 -0.1 330,283 + COO64_RS04260 0.56 -0.2 330,283 + COO64_RS04260 0.56 -0.9 330,697 - -0.8 330,714 + +0.0 330,714 + -0.7 330,714 + +0.2 330,714 + -0.7 330,714 + +0.3 330,714 + -0.1 330,715 - -1.5 330,715 - +0.5 330,715 - +1.1 330,856 + COO64_RS04265 0.59 +0.4 330,899 + COO64_RS04265 0.75 -0.2 330,899 + COO64_RS04265 0.75 -1.4 330,899 + COO64_RS04265 0.75 +0.3 330,900 - COO64_RS04265 0.75 -0.9 331,061 + -1.1 331,062 - -1.8 331,062 - +1.3 331,109 + rapZ COO64_RS04270 0.14 -1.4 331,109 + rapZ COO64_RS04270 0.14 +0.8 331,109 + rapZ COO64_RS04270 0.14 -0.3 331,110 - rapZ COO64_RS04270 0.14 -1.0 331,110 - rapZ COO64_RS04270 0.14 +2.0 331,110 - rapZ COO64_RS04270 0.14 -0.7 331,110 - rapZ COO64_RS04270 0.14 -0.5 331,110 - rapZ COO64_RS04270 0.14 -0.2 331,154 + rapZ COO64_RS04270 0.19 -1.5 331,154 + rapZ COO64_RS04270 0.19 -2.1 331,154 + rapZ COO64_RS04270 0.19 -0.1 331,154 + rapZ COO64_RS04270 0.19 -2.5 331,155 - rapZ COO64_RS04270 0.20 -0.4 331,155 - rapZ COO64_RS04270 0.20 -0.2 331,155 - rapZ COO64_RS04270 0.20 -1.1 331,206 - rapZ COO64_RS04270 0.25 -0.9 331,206 - rapZ COO64_RS04270 0.25 +0.4 331,206 - rapZ COO64_RS04270 0.25 +0.8 331,404 - rapZ COO64_RS04270 0.49 +0.9 331,578 - rapZ COO64_RS04270 0.69 -0.3 331,578 - rapZ COO64_RS04270 0.69 -0.7
Or see this region's nucleotide sequence