Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS04140

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS04130 and COO64_RS04135 overlap by 1 nucleotidesCOO64_RS04135 and COO64_RS04140 are separated by 94 nucleotidesCOO64_RS04140 and COO64_RS04145 are separated by 14 nucleotides COO64_RS04130: COO64_RS04130 - ATP-binding protein, at 301,752 to 303,008 _RS04130 COO64_RS04135: COO64_RS04135 - response regulator transcription factor, at 303,008 to 303,568 _RS04135 COO64_RS04140: COO64_RS04140 - hypothetical protein, at 303,663 to 303,854 _RS04140 COO64_RS04145: COO64_RS04145 - hypothetical protein, at 303,869 to 305,509 _RS04145 Position (kb) 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 302.758 kb on + strand, within COO64_RS04130at 302.758 kb on + strand, within COO64_RS04130at 302.759 kb on - strand, within COO64_RS04130at 302.759 kb on - strand, within COO64_RS04130at 302.858 kb on + strand, within COO64_RS04130at 302.933 kb on - strandat 302.940 kb on + strandat 302.940 kb on + strandat 302.940 kb on + strandat 302.940 kb on + strandat 302.940 kb on + strandat 302.942 kb on + strandat 302.943 kb on - strandat 303.225 kb on + strand, within COO64_RS04135at 303.225 kb on + strand, within COO64_RS04135at 303.335 kb on + strand, within COO64_RS04135at 303.335 kb on + strand, within COO64_RS04135at 303.335 kb on + strand, within COO64_RS04135at 303.336 kb on - strand, within COO64_RS04135at 303.336 kb on - strand, within COO64_RS04135at 303.336 kb on - strand, within COO64_RS04135at 303.336 kb on - strand, within COO64_RS04135at 303.596 kb on + strandat 303.630 kb on + strandat 303.630 kb on + strandat 303.630 kb on + strandat 303.630 kb on + strandat 303.630 kb on + strandat 303.630 kb on + strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.631 kb on - strandat 303.664 kb on + strandat 303.664 kb on + strandat 303.665 kb on - strandat 303.665 kb on - strandat 303.775 kb on - strand, within COO64_RS04140at 303.845 kb on + strandat 303.867 kb on + strandat 303.888 kb on + strandat 303.888 kb on + strandat 303.888 kb on + strandat 303.888 kb on + strandat 303.888 kb on + strandat 303.889 kb on - strandat 303.889 kb on - strandat 303.889 kb on - strandat 303.889 kb on - strandat 303.889 kb on - strandat 304.032 kb on + strandat 304.032 kb on + strandat 304.033 kb on - strand, within COO64_RS04145at 304.033 kb on - strand, within COO64_RS04145at 304.053 kb on + strand, within COO64_RS04145at 304.053 kb on + strand, within COO64_RS04145at 304.053 kb on + strand, within COO64_RS04145at 304.053 kb on + strand, within COO64_RS04145at 304.054 kb on - strand, within COO64_RS04145at 304.054 kb on - strand, within COO64_RS04145at 304.054 kb on - strand, within COO64_RS04145at 304.054 kb on - strand, within COO64_RS04145at 304.131 kb on - strand, within COO64_RS04145at 304.212 kb on + strand, within COO64_RS04145at 304.213 kb on - strand, within COO64_RS04145at 304.213 kb on - strand, within COO64_RS04145at 304.213 kb on - strand, within COO64_RS04145at 304.213 kb on - strand, within COO64_RS04145at 304.231 kb on - strand, within COO64_RS04145at 304.231 kb on - strand, within COO64_RS04145at 304.231 kb on - strand, within COO64_RS04145at 304.398 kb on + strand, within COO64_RS04145at 304.399 kb on - strand, within COO64_RS04145at 304.399 kb on - strand, within COO64_RS04145at 304.420 kb on + strand, within COO64_RS04145at 304.421 kb on - strand, within COO64_RS04145at 304.527 kb on + strand, within COO64_RS04145at 304.528 kb on - strand, within COO64_RS04145at 304.541 kb on - strand, within COO64_RS04145at 304.572 kb on + strand, within COO64_RS04145at 304.572 kb on + strand, within COO64_RS04145at 304.803 kb on + strand, within COO64_RS04145at 304.803 kb on + strand, within COO64_RS04145at 304.803 kb on + strand, within COO64_RS04145at 304.803 kb on + strand, within COO64_RS04145at 304.803 kb on + strand, within COO64_RS04145at 304.804 kb on - strand, within COO64_RS04145at 304.804 kb on - strand, within COO64_RS04145at 304.804 kb on - strand, within COO64_RS04145

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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302,758 + COO64_RS04130 0.80 +0.0
302,758 + COO64_RS04130 0.80 -1.2
302,759 - COO64_RS04130 0.80 -0.1
302,759 - COO64_RS04130 0.80 +0.0
302,858 + COO64_RS04130 0.88 -1.0
302,933 - +1.0
302,940 + +0.5
302,940 + +0.1
302,940 + +0.2
302,940 + -1.8
302,940 + -0.6
302,942 + +1.4
302,943 - +1.0
303,225 + COO64_RS04135 0.39 +0.0
303,225 + COO64_RS04135 0.39 -0.8
303,335 + COO64_RS04135 0.58 +1.6
303,335 + COO64_RS04135 0.58 -0.8
303,335 + COO64_RS04135 0.58 +0.4
303,336 - COO64_RS04135 0.58 +1.4
303,336 - COO64_RS04135 0.58 -0.3
303,336 - COO64_RS04135 0.58 +0.4
303,336 - COO64_RS04135 0.58 -0.6
303,596 + -0.4
303,630 + -0.6
303,630 + +0.2
303,630 + +0.4
303,630 + -0.2
303,630 + +0.7
303,630 + -0.2
303,631 - +1.4
303,631 - -0.5
303,631 - -0.1
303,631 - +1.4
303,631 - +0.8
303,631 - +0.6
303,631 - -1.6
303,631 - -0.5
303,664 + +0.2
303,664 + -0.1
303,665 - -0.3
303,665 - -0.7
303,775 - COO64_RS04140 0.58 -0.7
303,845 + -1.1
303,867 + -0.2
303,888 + +0.6
303,888 + +0.2
303,888 + +1.0
303,888 + +0.3
303,888 + -0.6
303,889 - -1.9
303,889 - -0.9
303,889 - +0.4
303,889 - -0.7
303,889 - -0.2
304,032 + -0.4
304,032 + +1.1
304,033 - COO64_RS04145 0.10 +0.4
304,033 - COO64_RS04145 0.10 -0.2
304,053 + COO64_RS04145 0.11 +0.9
304,053 + COO64_RS04145 0.11 +0.0
304,053 + COO64_RS04145 0.11 +0.5
304,053 + COO64_RS04145 0.11 +0.4
304,054 - COO64_RS04145 0.11 +0.5
304,054 - COO64_RS04145 0.11 -1.1
304,054 - COO64_RS04145 0.11 +0.1
304,054 - COO64_RS04145 0.11 -0.2
304,131 - COO64_RS04145 0.16 -1.1
304,212 + COO64_RS04145 0.21 -0.0
304,213 - COO64_RS04145 0.21 -0.2
304,213 - COO64_RS04145 0.21 -0.4
304,213 - COO64_RS04145 0.21 +0.2
304,213 - COO64_RS04145 0.21 +0.6
304,231 - COO64_RS04145 0.22 +1.3
304,231 - COO64_RS04145 0.22 +1.0
304,231 - COO64_RS04145 0.22 +1.0
304,398 + COO64_RS04145 0.32 +2.0
304,399 - COO64_RS04145 0.32 +0.4
304,399 - COO64_RS04145 0.32 +0.2
304,420 + COO64_RS04145 0.34 +0.3
304,421 - COO64_RS04145 0.34 +0.0
304,527 + COO64_RS04145 0.40 +1.0
304,528 - COO64_RS04145 0.40 +0.4
304,541 - COO64_RS04145 0.41 -1.1
304,572 + COO64_RS04145 0.43 +0.4
304,572 + COO64_RS04145 0.43 -0.3
304,803 + COO64_RS04145 0.57 -2.1
304,803 + COO64_RS04145 0.57 +0.7
304,803 + COO64_RS04145 0.57 +0.0
304,803 + COO64_RS04145 0.57 +0.1
304,803 + COO64_RS04145 0.57 +0.3
304,804 - COO64_RS04145 0.57 +1.4
304,804 - COO64_RS04145 0.57 +0.3
304,804 - COO64_RS04145 0.57 -0.6

Or see this region's nucleotide sequence