Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS04125 and COO64_RS04130 are separated by 202 nucleotides COO64_RS04130 and COO64_RS04135 overlap by 1 nucleotides COO64_RS04135 and COO64_RS04140 are separated by 94 nucleotides COO64_RS04140 and COO64_RS04145 are separated by 14 nucleotides
COO64_RS04125: COO64_RS04125 - SIMPL domain-containing protein, at 300,833 to 301,549
_RS04125
COO64_RS04130: COO64_RS04130 - ATP-binding protein, at 301,752 to 303,008
_RS04130
COO64_RS04135: COO64_RS04135 - response regulator transcription factor, at 303,008 to 303,568
_RS04135
COO64_RS04140: COO64_RS04140 - hypothetical protein, at 303,663 to 303,854
_RS04140
COO64_RS04145: COO64_RS04145 - hypothetical protein, at 303,869 to 305,509
_RS04145
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 300.772 kb on + strand at 300.773 kb on - strand at 300.778 kb on + strand at 300.835 kb on - strand at 300.963 kb on + strand, within COO64_RS04125 at 300.963 kb on + strand, within COO64_RS04125 at 300.963 kb on + strand, within COO64_RS04125 at 300.963 kb on + strand, within COO64_RS04125 at 300.963 kb on + strand, within COO64_RS04125 at 300.963 kb on + strand, within COO64_RS04125 at 300.964 kb on - strand, within COO64_RS04125 at 300.964 kb on - strand, within COO64_RS04125 at 300.964 kb on - strand, within COO64_RS04125 at 300.964 kb on - strand, within COO64_RS04125 at 300.964 kb on - strand, within COO64_RS04125 at 301.011 kb on + strand, within COO64_RS04125 at 301.011 kb on + strand, within COO64_RS04125 at 301.011 kb on + strand, within COO64_RS04125 at 301.012 kb on - strand, within COO64_RS04125 at 301.012 kb on - strand, within COO64_RS04125 at 301.012 kb on - strand, within COO64_RS04125 at 301.012 kb on - strand, within COO64_RS04125 at 301.257 kb on + strand, within COO64_RS04125 at 301.257 kb on + strand, within COO64_RS04125 at 301.257 kb on + strand, within COO64_RS04125 at 301.257 kb on + strand, within COO64_RS04125 at 301.258 kb on - strand, within COO64_RS04125 at 301.267 kb on - strand, within COO64_RS04125 at 301.392 kb on + strand, within COO64_RS04125 at 301.392 kb on + strand, within COO64_RS04125 at 301.393 kb on - strand, within COO64_RS04125 at 301.461 kb on + strand, within COO64_RS04125 at 301.462 kb on - strand, within COO64_RS04125 at 301.462 kb on - strand, within COO64_RS04125 at 301.543 kb on + strand at 301.543 kb on + strand at 301.543 kb on + strand at 301.544 kb on - strand at 301.544 kb on - strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.551 kb on + strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.552 kb on - strand at 301.608 kb on + strand at 301.609 kb on - strand at 301.609 kb on - strand at 301.625 kb on + strand at 301.626 kb on - strand at 301.626 kb on - strand at 301.626 kb on - strand at 301.710 kb on - strand at 301.711 kb on + strand at 301.765 kb on + strand at 301.766 kb on - strand at 301.958 kb on + strand, within COO64_RS04130 at 301.958 kb on + strand, within COO64_RS04130 at 301.958 kb on + strand, within COO64_RS04130 at 301.958 kb on + strand, within COO64_RS04130 at 301.958 kb on + strand, within COO64_RS04130 at 301.959 kb on - strand, within COO64_RS04130 at 301.983 kb on + strand, within COO64_RS04130 at 301.983 kb on + strand, within COO64_RS04130 at 301.983 kb on + strand, within COO64_RS04130 at 302.031 kb on + strand, within COO64_RS04130 at 302.031 kb on + strand, within COO64_RS04130 at 302.031 kb on + strand, within COO64_RS04130 at 302.031 kb on + strand, within COO64_RS04130 at 302.031 kb on + strand, within COO64_RS04130 at 302.032 kb on - strand, within COO64_RS04130 at 302.032 kb on - strand, within COO64_RS04130 at 302.034 kb on + strand, within COO64_RS04130 at 302.035 kb on - strand, within COO64_RS04130 at 302.067 kb on + strand, within COO64_RS04130 at 302.068 kb on - strand, within COO64_RS04130 at 302.068 kb on - strand, within COO64_RS04130 at 302.068 kb on - strand, within COO64_RS04130 at 302.068 kb on - strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.070 kb on + strand, within COO64_RS04130 at 302.071 kb on - strand, within COO64_RS04130 at 302.151 kb on + strand, within COO64_RS04130 at 302.152 kb on - strand, within COO64_RS04130 at 302.176 kb on - strand, within COO64_RS04130 at 302.261 kb on + strand, within COO64_RS04130 at 302.262 kb on - strand, within COO64_RS04130 at 302.262 kb on - strand, within COO64_RS04130 at 302.262 kb on - strand, within COO64_RS04130 at 302.262 kb on - strand, within COO64_RS04130 at 302.262 kb on - strand, within COO64_RS04130 at 302.637 kb on + strand, within COO64_RS04130 at 302.638 kb on - strand, within COO64_RS04130 at 302.638 kb on - strand, within COO64_RS04130 at 302.758 kb on + strand, within COO64_RS04130 at 302.758 kb on + strand, within COO64_RS04130 at 302.759 kb on - strand, within COO64_RS04130 at 302.759 kb on - strand, within COO64_RS04130 at 302.858 kb on + strand, within COO64_RS04130 at 302.933 kb on - strand at 302.940 kb on + strand at 302.940 kb on + strand at 302.940 kb on + strand at 302.940 kb on + strand at 302.940 kb on + strand at 302.942 kb on + strand at 302.943 kb on - strand at 303.225 kb on + strand, within COO64_RS04135 at 303.225 kb on + strand, within COO64_RS04135 at 303.335 kb on + strand, within COO64_RS04135 at 303.335 kb on + strand, within COO64_RS04135 at 303.335 kb on + strand, within COO64_RS04135 at 303.336 kb on - strand, within COO64_RS04135 at 303.336 kb on - strand, within COO64_RS04135 at 303.336 kb on - strand, within COO64_RS04135 at 303.336 kb on - strand, within COO64_RS04135 at 303.596 kb on + strand at 303.630 kb on + strand at 303.630 kb on + strand at 303.630 kb on + strand at 303.630 kb on + strand at 303.630 kb on + strand at 303.630 kb on + strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.631 kb on - strand at 303.664 kb on + strand at 303.664 kb on + strand at 303.665 kb on - strand at 303.665 kb on - strand at 303.775 kb on - strand, within COO64_RS04140 at 303.845 kb on + strand at 303.867 kb on + strand at 303.888 kb on + strand at 303.888 kb on + strand at 303.888 kb on + strand at 303.888 kb on + strand at 303.888 kb on + strand at 303.889 kb on - strand at 303.889 kb on - strand at 303.889 kb on - strand at 303.889 kb on - strand at 303.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 300,772 + -0.3 300,773 - -1.7 300,778 + -0.3 300,835 - +0.4 300,963 + COO64_RS04125 0.18 +0.9 300,963 + COO64_RS04125 0.18 +0.4 300,963 + COO64_RS04125 0.18 +0.9 300,963 + COO64_RS04125 0.18 +0.6 300,963 + COO64_RS04125 0.18 +0.3 300,963 + COO64_RS04125 0.18 -0.1 300,964 - COO64_RS04125 0.18 -1.4 300,964 - COO64_RS04125 0.18 -0.3 300,964 - COO64_RS04125 0.18 +0.0 300,964 - COO64_RS04125 0.18 -0.1 300,964 - COO64_RS04125 0.18 +0.1 301,011 + COO64_RS04125 0.25 -1.0 301,011 + COO64_RS04125 0.25 +0.9 301,011 + COO64_RS04125 0.25 +0.0 301,012 - COO64_RS04125 0.25 -0.4 301,012 - COO64_RS04125 0.25 +0.2 301,012 - COO64_RS04125 0.25 -0.2 301,012 - COO64_RS04125 0.25 +0.4 301,257 + COO64_RS04125 0.59 +0.3 301,257 + COO64_RS04125 0.59 +0.3 301,257 + COO64_RS04125 0.59 +0.2 301,257 + COO64_RS04125 0.59 -0.8 301,258 - COO64_RS04125 0.59 -0.5 301,267 - COO64_RS04125 0.61 +0.6 301,392 + COO64_RS04125 0.78 -0.2 301,392 + COO64_RS04125 0.78 -0.9 301,393 - COO64_RS04125 0.78 +0.4 301,461 + COO64_RS04125 0.88 -1.4 301,462 - COO64_RS04125 0.88 -0.3 301,462 - COO64_RS04125 0.88 +0.2 301,543 + -0.6 301,543 + +0.3 301,543 + -1.1 301,544 - +0.8 301,544 - -0.1 301,551 + -0.8 301,551 + -2.0 301,551 + +0.1 301,551 + -0.4 301,551 + +0.6 301,551 + +0.4 301,551 + -1.2 301,551 + -0.3 301,551 + +1.0 301,551 + -0.8 301,551 + -0.5 301,551 + -0.6 301,551 + -0.8 301,551 + +0.2 301,551 + +0.3 301,551 + -0.1 301,551 + -0.9 301,551 + -0.4 301,551 + -0.9 301,551 + -0.9 301,551 + -0.8 301,551 + -0.2 301,551 + +0.2 301,551 + +0.5 301,551 + +1.0 301,552 - -0.0 301,552 - +0.1 301,552 - -0.3 301,552 - +0.5 301,552 - -0.0 301,552 - -0.5 301,552 - -0.4 301,552 - +0.7 301,552 - +0.3 301,552 - -0.2 301,552 - +0.2 301,552 - +1.4 301,552 - -0.0 301,552 - -0.3 301,552 - +0.1 301,552 - +0.1 301,552 - -0.0 301,552 - -0.0 301,552 - +1.0 301,552 - +1.0 301,552 - -0.7 301,552 - -0.2 301,552 - -2.0 301,552 - +0.5 301,552 - +0.3 301,552 - -0.2 301,552 - +0.9 301,552 - -0.6 301,608 + -1.2 301,609 - -0.5 301,609 - +0.3 301,625 + -0.3 301,626 - -0.2 301,626 - -0.2 301,626 - +0.3 301,710 - +0.4 301,711 + -0.1 301,765 + +0.6 301,766 - +1.0 301,958 + COO64_RS04130 0.16 -1.3 301,958 + COO64_RS04130 0.16 -1.3 301,958 + COO64_RS04130 0.16 -2.0 301,958 + COO64_RS04130 0.16 +0.7 301,958 + COO64_RS04130 0.16 -0.1 301,959 - COO64_RS04130 0.16 +0.0 301,983 + COO64_RS04130 0.18 +1.4 301,983 + COO64_RS04130 0.18 +0.3 301,983 + COO64_RS04130 0.18 -0.1 302,031 + COO64_RS04130 0.22 -0.3 302,031 + COO64_RS04130 0.22 +0.4 302,031 + COO64_RS04130 0.22 +0.2 302,031 + COO64_RS04130 0.22 -1.0 302,031 + COO64_RS04130 0.22 -0.8 302,032 - COO64_RS04130 0.22 +0.0 302,032 - COO64_RS04130 0.22 +0.4 302,034 + COO64_RS04130 0.22 -0.9 302,035 - COO64_RS04130 0.23 +0.2 302,067 + COO64_RS04130 0.25 -0.3 302,068 - COO64_RS04130 0.25 +0.4 302,068 - COO64_RS04130 0.25 -0.6 302,068 - COO64_RS04130 0.25 -0.6 302,068 - COO64_RS04130 0.25 -1.0 302,070 + COO64_RS04130 0.25 -0.6 302,070 + COO64_RS04130 0.25 -0.0 302,070 + COO64_RS04130 0.25 +1.6 302,070 + COO64_RS04130 0.25 -1.1 302,070 + COO64_RS04130 0.25 +0.2 302,070 + COO64_RS04130 0.25 -1.7 302,071 - COO64_RS04130 0.25 -1.0 302,151 + COO64_RS04130 0.32 -1.7 302,152 - COO64_RS04130 0.32 -1.0 302,176 - COO64_RS04130 0.34 +0.8 302,261 + COO64_RS04130 0.40 -2.4 302,262 - COO64_RS04130 0.41 +0.3 302,262 - COO64_RS04130 0.41 -1.7 302,262 - COO64_RS04130 0.41 +1.0 302,262 - COO64_RS04130 0.41 +0.7 302,262 - COO64_RS04130 0.41 +0.0 302,637 + COO64_RS04130 0.70 -2.5 302,638 - COO64_RS04130 0.70 +0.4 302,638 - COO64_RS04130 0.70 +1.3 302,758 + COO64_RS04130 0.80 +0.0 302,758 + COO64_RS04130 0.80 -1.2 302,759 - COO64_RS04130 0.80 -0.1 302,759 - COO64_RS04130 0.80 +0.0 302,858 + COO64_RS04130 0.88 -1.0 302,933 - +1.0 302,940 + +0.5 302,940 + +0.1 302,940 + +0.2 302,940 + -1.8 302,940 + -0.6 302,942 + +1.4 302,943 - +1.0 303,225 + COO64_RS04135 0.39 +0.0 303,225 + COO64_RS04135 0.39 -0.8 303,335 + COO64_RS04135 0.58 +1.6 303,335 + COO64_RS04135 0.58 -0.8 303,335 + COO64_RS04135 0.58 +0.4 303,336 - COO64_RS04135 0.58 +1.4 303,336 - COO64_RS04135 0.58 -0.3 303,336 - COO64_RS04135 0.58 +0.4 303,336 - COO64_RS04135 0.58 -0.6 303,596 + -0.4 303,630 + -0.6 303,630 + +0.2 303,630 + +0.4 303,630 + -0.2 303,630 + +0.7 303,630 + -0.2 303,631 - +1.4 303,631 - -0.5 303,631 - -0.1 303,631 - +1.4 303,631 - +0.8 303,631 - +0.6 303,631 - -1.6 303,631 - -0.5 303,664 + +0.2 303,664 + -0.1 303,665 - -0.3 303,665 - -0.7 303,775 - COO64_RS04140 0.58 -0.7 303,845 + -1.1 303,867 + -0.2 303,888 + +0.6 303,888 + +0.2 303,888 + +1.0 303,888 + +0.3 303,888 + -0.6 303,889 - -1.9 303,889 - -0.9 303,889 - +0.4 303,889 - -0.7 303,889 - -0.2
Or see this region's nucleotide sequence