Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS03520

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrxB and nadC are separated by 59 nucleotidesnadC and COO64_RS03525 are separated by 254 nucleotides COO64_RS03515: trxB - thioredoxin-disulfide reductase, at 181,423 to 182,385 trxB COO64_RS03520: nadC - carboxylating nicotinate-nucleotide diphosphorylase, at 182,445 to 183,293 nadC COO64_RS03525: COO64_RS03525 - DUF1631 domain-containing protein, at 183,548 to 185,746 _RS03525 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.387 kb on - strandat 182.387 kb on - strandat 182.387 kb on - strandat 182.413 kb on + strandat 182.414 kb on - strandat 182.414 kb on - strandat 182.428 kb on + strandat 182.429 kb on - strandat 182.429 kb on - strandat 182.454 kb on - strandat 182.481 kb on + strandat 182.481 kb on + strandat 182.481 kb on + strandat 182.481 kb on + strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.482 kb on - strandat 182.512 kb on + strandat 182.512 kb on + strandat 182.512 kb on + strandat 182.512 kb on + strandat 182.512 kb on + strandat 182.512 kb on + strandat 182.513 kb on - strandat 182.513 kb on - strandat 182.513 kb on - strandat 182.513 kb on - strandat 182.695 kb on - strand, within nadCat 182.695 kb on - strand, within nadCat 182.695 kb on - strand, within nadCat 182.803 kb on + strand, within nadCat 182.849 kb on - strand, within nadCat 183.310 kb on + strandat 183.310 kb on + strandat 183.310 kb on + strandat 183.310 kb on + strandat 183.310 kb on + strandat 183.310 kb on + strandat 183.311 kb on - strandat 183.311 kb on - strandat 183.311 kb on - strandat 183.311 kb on - strandat 183.325 kb on - strandat 183.325 kb on - strandat 183.325 kb on - strandat 183.326 kb on + strandat 183.326 kb on + strandat 183.326 kb on + strandat 183.326 kb on + strandat 183.326 kb on + strandat 183.327 kb on - strandat 183.327 kb on - strandat 183.327 kb on - strandat 183.407 kb on + strandat 183.423 kb on + strandat 183.484 kb on + strandat 183.496 kb on + strandat 183.497 kb on - strandat 183.706 kb on + strandat 183.706 kb on + strandat 183.707 kb on - strandat 183.707 kb on - strandat 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.827 kb on + strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 183.828 kb on - strand, within COO64_RS03525at 184.074 kb on - strand, within COO64_RS03525at 184.148 kb on + strand, within COO64_RS03525at 184.148 kb on + strand, within COO64_RS03525at 184.148 kb on + strand, within COO64_RS03525at 184.148 kb on + strand, within COO64_RS03525at 184.148 kb on + strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.149 kb on - strand, within COO64_RS03525at 184.175 kb on + strand, within COO64_RS03525at 184.175 kb on + strand, within COO64_RS03525at 184.175 kb on + strand, within COO64_RS03525at 184.175 kb on + strand, within COO64_RS03525

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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182,387 - +0.1
182,387 - +0.6
182,387 - -0.1
182,413 + -0.6
182,414 - +0.3
182,414 - +0.8
182,428 + -0.4
182,429 - +0.8
182,429 - +0.0
182,454 - -0.8
182,481 + -0.2
182,481 + +0.6
182,481 + +0.4
182,481 + -0.2
182,482 - +1.3
182,482 - -0.1
182,482 - -0.1
182,482 - +2.4
182,482 - -0.1
182,482 - -0.6
182,482 - +0.5
182,512 + -0.7
182,512 + -0.7
182,512 + +0.2
182,512 + -1.1
182,512 + +1.7
182,512 + +0.2
182,513 - -0.1
182,513 - -0.1
182,513 - -0.5
182,513 - +1.4
182,695 - nadC COO64_RS03520 0.29 -0.9
182,695 - nadC COO64_RS03520 0.29 -0.2
182,695 - nadC COO64_RS03520 0.29 +0.7
182,803 + nadC COO64_RS03520 0.42 -1.6
182,849 - nadC COO64_RS03520 0.48 -1.6
183,310 + +0.0
183,310 + -1.0
183,310 + -0.8
183,310 + -3.1
183,310 + -0.1
183,310 + +0.6
183,311 - +0.1
183,311 - +1.0
183,311 - -0.8
183,311 - -0.4
183,325 - -1.3
183,325 - +0.0
183,325 - -0.4
183,326 + +0.1
183,326 + -0.5
183,326 + +0.3
183,326 + -2.2
183,326 + -0.4
183,327 - +0.3
183,327 - +0.7
183,327 - +0.2
183,407 + -1.3
183,423 + -0.1
183,484 + -0.4
183,496 + -0.1
183,497 - +0.7
183,706 + -0.4
183,706 + -0.1
183,707 - -0.2
183,707 - +0.5
183,827 + COO64_RS03525 0.13 -0.2
183,827 + COO64_RS03525 0.13 +0.0
183,827 + COO64_RS03525 0.13 -1.0
183,827 + COO64_RS03525 0.13 -0.6
183,827 + COO64_RS03525 0.13 +1.5
183,827 + COO64_RS03525 0.13 -0.3
183,827 + COO64_RS03525 0.13 -0.2
183,828 - COO64_RS03525 0.13 -0.4
183,828 - COO64_RS03525 0.13 -1.0
183,828 - COO64_RS03525 0.13 -2.1
183,828 - COO64_RS03525 0.13 +0.5
183,828 - COO64_RS03525 0.13 -0.6
183,828 - COO64_RS03525 0.13 +0.7
183,828 - COO64_RS03525 0.13 -0.3
183,828 - COO64_RS03525 0.13 +0.7
183,828 - COO64_RS03525 0.13 -0.0
184,074 - COO64_RS03525 0.24 -0.3
184,148 + COO64_RS03525 0.27 +1.9
184,148 + COO64_RS03525 0.27 -1.6
184,148 + COO64_RS03525 0.27 +0.1
184,148 + COO64_RS03525 0.27 +0.4
184,148 + COO64_RS03525 0.27 +0.2
184,149 - COO64_RS03525 0.27 +0.1
184,149 - COO64_RS03525 0.27 +1.4
184,149 - COO64_RS03525 0.27 -1.0
184,149 - COO64_RS03525 0.27 +0.3
184,149 - COO64_RS03525 0.27 -1.2
184,149 - COO64_RS03525 0.27 -0.7
184,175 + COO64_RS03525 0.29 -1.1
184,175 + COO64_RS03525 0.29 -0.1
184,175 + COO64_RS03525 0.29 -0.6
184,175 + COO64_RS03525 0.29 -1.0

Or see this region's nucleotide sequence