Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS03185

Experiment: supernatant control, M9 with 0.25X LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	supernatant control, M9 with 0.25X LB
114,716	+				+0.5
114,716	+				-0.3
114,717	-				-0.2
114,784	+				+1.6
114,784	+				-0.7
114,784	+				+0.0
114,784	+				+0.2
114,784	+				-0.2
114,784	+				+0.2
114,784	+				+0.1
114,784	+				+0.2
114,784	+				+0.6
114,785	-				-0.4
114,785	-				-0.2
114,785	-				+0.2
114,891	-	ppk2	COO64_RS03180	0.17	-0.4
114,891	-	ppk2	COO64_RS03180	0.17	-0.9
114,931	+	ppk2	COO64_RS03180	0.22	+0.8
114,931	+	ppk2	COO64_RS03180	0.22	-0.6
114,931	+	ppk2	COO64_RS03180	0.22	-0.6
114,931	+	ppk2	COO64_RS03180	0.22	+1.3
114,931	+	ppk2	COO64_RS03180	0.22	-0.5
114,931	+	ppk2	COO64_RS03180	0.22	+0.2
114,931	+	ppk2	COO64_RS03180	0.22	-0.2
114,932	-	ppk2	COO64_RS03180	0.22	-0.3
114,932	-	ppk2	COO64_RS03180	0.22	-0.1
114,932	-	ppk2	COO64_RS03180	0.22	-1.6
114,988	+	ppk2	COO64_RS03180	0.29	-0.2
114,988	+	ppk2	COO64_RS03180	0.29	-0.5
114,988	+	ppk2	COO64_RS03180	0.29	+0.7
114,988	+	ppk2	COO64_RS03180	0.29	+0.6
114,988	+	ppk2	COO64_RS03180	0.29	+0.0
114,989	-	ppk2	COO64_RS03180	0.29	-1.2
114,989	-	ppk2	COO64_RS03180	0.29	-0.3
114,989	-	ppk2	COO64_RS03180	0.29	-2.4
115,108	+	ppk2	COO64_RS03180	0.44	+0.4
115,109	-	ppk2	COO64_RS03180	0.44	-0.6
115,231	+	ppk2	COO64_RS03180	0.59	+0.6
115,231	+	ppk2	COO64_RS03180	0.59	-0.9
115,231	+	ppk2	COO64_RS03180	0.59	-0.5
115,231	+	ppk2	COO64_RS03180	0.59	+0.3
115,231	+	ppk2	COO64_RS03180	0.59	-0.2
115,232	-	ppk2	COO64_RS03180	0.59	-0.9
115,232	-	ppk2	COO64_RS03180	0.59	-0.8
115,232	-	ppk2	COO64_RS03180	0.59	-1.0
115,232	-	ppk2	COO64_RS03180	0.59	-2.2
115,232	-	ppk2	COO64_RS03180	0.59	+0.0
115,285	+	ppk2	COO64_RS03180	0.66	-0.7
115,285	+	ppk2	COO64_RS03180	0.66	+0.4
115,285	+	ppk2	COO64_RS03180	0.66	+0.9
115,285	+	ppk2	COO64_RS03180	0.66	-0.1
115,297	+	ppk2	COO64_RS03180	0.67	+1.5
115,297	+	ppk2	COO64_RS03180	0.67	+0.1
115,297	+	ppk2	COO64_RS03180	0.67	-1.7
115,297	+	ppk2	COO64_RS03180	0.67	+0.1
115,298	-	ppk2	COO64_RS03180	0.67	+0.6
115,298	-	ppk2	COO64_RS03180	0.67	+0.2
115,298	-	ppk2	COO64_RS03180	0.67	+0.2
115,298	-	ppk2	COO64_RS03180	0.67	+0.0
115,449	+	ppk2	COO64_RS03180	0.86	+0.5
115,507	+				+0.2
115,507	+				-0.1
115,508	-				-0.3
115,508	-				+0.2
115,557	-				+0.4
115,613	-				-0.2
115,614	+				-0.5
115,614	+				-1.0
115,614	+				-0.4
115,614	+				-0.1
115,614	+				+0.7
115,614	+				+0.1
115,614	+				-1.2
115,614	+				+0.3
115,614	+				-0.4
115,614	+				+0.5
115,615	-				-1.4
115,615	-				-0.1
115,615	-				-0.4
115,615	-				-1.1
115,615	-				-0.2
115,615	-				+1.8
115,615	-				+0.9
115,615	-				-1.3
115,615	-				-0.0
115,615	-				-0.3
115,675	+				+0.5
115,675	+				-0.2
115,757	+				-0.7
115,757	+				+0.1
115,757	+				-0.6
115,757	+				+0.7
115,757	+				-1.0
115,757	+				-0.8
115,758	-				+0.4
115,758	-				+0.4
115,758	-				-0.2
115,758	-				+0.3
115,758	-				-2.1
115,758	-				-2.4
115,758	-				-1.7
115,783	-				+0.6
115,814	+				-0.6
115,814	+				+1.0
115,814	+				+0.7
115,814	+				+0.6
115,815	-				+1.4
115,815	-				-1.1
115,833	-	ychF	COO64_RS03185	0.11	-0.2
115,919	-	ychF	COO64_RS03185	0.19	-1.2
115,933	+	ychF	COO64_RS03185	0.20	+0.1
115,934	-	ychF	COO64_RS03185	0.20	-0.6
115,958	+	ychF	COO64_RS03185	0.22	-0.7
115,958	+	ychF	COO64_RS03185	0.22	+0.0
115,958	+	ychF	COO64_RS03185	0.22	+0.0
115,959	-	ychF	COO64_RS03185	0.23	-0.2
115,959	-	ychF	COO64_RS03185	0.23	+1.2
116,195	+	ychF	COO64_RS03185	0.44	-1.3
116,195	+	ychF	COO64_RS03185	0.44	-1.2
116,195	+	ychF	COO64_RS03185	0.44	+0.2
116,195	+	ychF	COO64_RS03185	0.44	+0.0
116,195	+	ychF	COO64_RS03185	0.44	+1.0
116,195	+	ychF	COO64_RS03185	0.44	+0.1
116,195	+	ychF	COO64_RS03185	0.44	-0.9
116,195	+	ychF	COO64_RS03185	0.44	-0.2
116,196	-	ychF	COO64_RS03185	0.44	+1.0
116,196	-	ychF	COO64_RS03185	0.44	-1.4
116,196	-	ychF	COO64_RS03185	0.44	+1.0
117,448	-				+0.1
117,465	-				-0.6
117,492	-				-0.8
117,497	-				-1.7
117,775	-		COO64_RS03195	0.47	+0.8