Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS01560

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntspoT and COO64_RS01560 are separated by 23 nucleotidesCOO64_RS01560 and COO64_RS01565 are separated by 61 nucleotidesCOO64_RS01565 and COO64_RS01570 are separated by 3 nucleotides COO64_RS01555: spoT - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 322,470 to 324,578 spoT COO64_RS01560: COO64_RS01560 - RidA family protein, at 324,602 to 324,982 _RS01560 COO64_RS01565: COO64_RS01565 - hypothetical protein, at 325,044 to 325,781 _RS01565 COO64_RS01570: COO64_RS01570 - SDR family oxidoreductase, at 325,785 to 326,642 _RS01570 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 324.653 kb on + strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.654 kb on - strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.686 kb on + strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.687 kb on - strand, within COO64_RS01560at 324.884 kb on + strand, within COO64_RS01560at 324.884 kb on + strand, within COO64_RS01560at 324.884 kb on + strand, within COO64_RS01560at 324.885 kb on - strand, within COO64_RS01560at 324.885 kb on - strand, within COO64_RS01560at 324.980 kb on + strandat 325.124 kb on + strand, within COO64_RS01565at 325.124 kb on + strand, within COO64_RS01565at 325.124 kb on + strand, within COO64_RS01565at 325.125 kb on - strand, within COO64_RS01565at 325.125 kb on - strand, within COO64_RS01565at 325.125 kb on - strand, within COO64_RS01565at 325.245 kb on + strand, within COO64_RS01565at 325.245 kb on + strand, within COO64_RS01565at 325.245 kb on + strand, within COO64_RS01565at 325.318 kb on - strand, within COO64_RS01565at 325.326 kb on + strand, within COO64_RS01565at 325.327 kb on - strand, within COO64_RS01565at 325.327 kb on - strand, within COO64_RS01565at 325.327 kb on - strand, within COO64_RS01565at 325.327 kb on - strand, within COO64_RS01565at 325.464 kb on + strand, within COO64_RS01565at 325.464 kb on + strand, within COO64_RS01565at 325.465 kb on - strand, within COO64_RS01565at 325.465 kb on - strand, within COO64_RS01565at 325.465 kb on - strand, within COO64_RS01565at 325.466 kb on + strand, within COO64_RS01565at 325.466 kb on + strand, within COO64_RS01565at 325.466 kb on + strand, within COO64_RS01565at 325.466 kb on + strand, within COO64_RS01565at 325.466 kb on + strand, within COO64_RS01565at 325.467 kb on - strand, within COO64_RS01565at 325.467 kb on - strand, within COO64_RS01565at 325.473 kb on + strand, within COO64_RS01565at 325.473 kb on + strand, within COO64_RS01565at 325.779 kb on + strandat 325.780 kb on - strandat 325.780 kb on - strandat 325.780 kb on - strandat 325.786 kb on + strandat 325.813 kb on + strandat 325.814 kb on - strandat 325.814 kb on - strandat 325.814 kb on - strandat 325.825 kb on + strandat 325.825 kb on + strandat 325.825 kb on + strandat 325.825 kb on + strandat 325.825 kb on + strandat 325.826 kb on - strandat 325.826 kb on - strandat 325.826 kb on - strandat 325.826 kb on - strandat 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.936 kb on + strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570at 325.937 kb on - strand, within COO64_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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324,653 + COO64_RS01560 0.13 +0.3
324,654 - COO64_RS01560 0.14 +0.5
324,654 - COO64_RS01560 0.14 -0.9
324,654 - COO64_RS01560 0.14 -0.1
324,654 - COO64_RS01560 0.14 +0.5
324,654 - COO64_RS01560 0.14 +1.1
324,654 - COO64_RS01560 0.14 -1.1
324,654 - COO64_RS01560 0.14 -0.7
324,686 + COO64_RS01560 0.22 +0.5
324,686 + COO64_RS01560 0.22 -1.4
324,686 + COO64_RS01560 0.22 +0.1
324,686 + COO64_RS01560 0.22 +0.5
324,686 + COO64_RS01560 0.22 -0.2
324,686 + COO64_RS01560 0.22 +0.9
324,686 + COO64_RS01560 0.22 -0.5
324,686 + COO64_RS01560 0.22 +0.5
324,686 + COO64_RS01560 0.22 +1.1
324,686 + COO64_RS01560 0.22 +0.8
324,686 + COO64_RS01560 0.22 +1.5
324,686 + COO64_RS01560 0.22 -0.9
324,686 + COO64_RS01560 0.22 -0.9
324,686 + COO64_RS01560 0.22 -1.1
324,686 + COO64_RS01560 0.22 -0.2
324,686 + COO64_RS01560 0.22 -1.2
324,686 + COO64_RS01560 0.22 -0.5
324,686 + COO64_RS01560 0.22 +1.7
324,686 + COO64_RS01560 0.22 -2.5
324,687 - COO64_RS01560 0.22 +0.4
324,687 - COO64_RS01560 0.22 +0.8
324,687 - COO64_RS01560 0.22 +1.5
324,687 - COO64_RS01560 0.22 +0.1
324,687 - COO64_RS01560 0.22 +0.2
324,687 - COO64_RS01560 0.22 +0.3
324,687 - COO64_RS01560 0.22 +0.5
324,687 - COO64_RS01560 0.22 -0.1
324,687 - COO64_RS01560 0.22 +0.3
324,687 - COO64_RS01560 0.22 +2.1
324,687 - COO64_RS01560 0.22 -0.5
324,687 - COO64_RS01560 0.22 -1.1
324,687 - COO64_RS01560 0.22 +0.3
324,687 - COO64_RS01560 0.22 +0.9
324,687 - COO64_RS01560 0.22 -0.9
324,687 - COO64_RS01560 0.22 +1.1
324,687 - COO64_RS01560 0.22 +0.6
324,687 - COO64_RS01560 0.22 +0.5
324,687 - COO64_RS01560 0.22 +0.6
324,687 - COO64_RS01560 0.22 -1.7
324,687 - COO64_RS01560 0.22 -0.2
324,687 - COO64_RS01560 0.22 -0.7
324,884 + COO64_RS01560 0.74 -0.7
324,884 + COO64_RS01560 0.74 -1.6
324,884 + COO64_RS01560 0.74 -1.8
324,885 - COO64_RS01560 0.74 +0.5
324,885 - COO64_RS01560 0.74 +0.5
324,980 + +0.4
325,124 + COO64_RS01565 0.11 +0.4
325,124 + COO64_RS01565 0.11 +0.7
325,124 + COO64_RS01565 0.11 +1.9
325,125 - COO64_RS01565 0.11 -0.4
325,125 - COO64_RS01565 0.11 +1.2
325,125 - COO64_RS01565 0.11 -0.3
325,245 + COO64_RS01565 0.27 -0.1
325,245 + COO64_RS01565 0.27 -1.6
325,245 + COO64_RS01565 0.27 +0.4
325,318 - COO64_RS01565 0.37 +0.5
325,326 + COO64_RS01565 0.38 -1.4
325,327 - COO64_RS01565 0.38 +0.1
325,327 - COO64_RS01565 0.38 +0.5
325,327 - COO64_RS01565 0.38 +0.3
325,327 - COO64_RS01565 0.38 +0.8
325,464 + COO64_RS01565 0.57 +0.1
325,464 + COO64_RS01565 0.57 -0.5
325,465 - COO64_RS01565 0.57 -0.1
325,465 - COO64_RS01565 0.57 -1.0
325,465 - COO64_RS01565 0.57 -0.8
325,466 + COO64_RS01565 0.57 +1.2
325,466 + COO64_RS01565 0.57 -0.7
325,466 + COO64_RS01565 0.57 +0.1
325,466 + COO64_RS01565 0.57 -1.2
325,466 + COO64_RS01565 0.57 +0.2
325,467 - COO64_RS01565 0.57 -0.3
325,467 - COO64_RS01565 0.57 +0.7
325,473 + COO64_RS01565 0.58 +0.1
325,473 + COO64_RS01565 0.58 -0.9
325,779 + +0.5
325,780 - -0.4
325,780 - -0.3
325,780 - -1.6
325,786 + -1.1
325,813 + -1.3
325,814 - -0.7
325,814 - -1.4
325,814 - -0.3
325,825 + -0.1
325,825 + +2.4
325,825 + -1.1
325,825 + +0.5
325,825 + +0.4
325,826 - +0.0
325,826 - -0.7
325,826 - +0.5
325,826 - +1.5
325,936 + COO64_RS01570 0.18 -2.0
325,936 + COO64_RS01570 0.18 +0.5
325,936 + COO64_RS01570 0.18 -0.7
325,936 + COO64_RS01570 0.18 +0.5
325,936 + COO64_RS01570 0.18 -0.2
325,936 + COO64_RS01570 0.18 -0.2
325,936 + COO64_RS01570 0.18 -0.1
325,937 - COO64_RS01570 0.18 +1.6
325,937 - COO64_RS01570 0.18 -0.7
325,937 - COO64_RS01570 0.18 +0.5
325,937 - COO64_RS01570 0.18 +0.3
325,937 - COO64_RS01570 0.18 +0.8
325,937 - COO64_RS01570 0.18 -0.3
325,937 - COO64_RS01570 0.18 -2.2

Or see this region's nucleotide sequence