Strain Fitness in Pseudomonas sp. SVBP6 around COO64_RS01140

Experiment: supernatant control, M9 with 0.25X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCOO64_RS01130 and COO64_RS01135 are separated by 50 nucleotidesCOO64_RS01135 and COO64_RS01140 are separated by 83 nucleotidesCOO64_RS01140 and COO64_RS01145 overlap by 1 nucleotides COO64_RS01130: COO64_RS01130 - hypothetical protein, at 242,414 to 243,154 _RS01130 COO64_RS01135: COO64_RS01135 - LysE family transporter, at 243,205 to 243,837 _RS01135 COO64_RS01140: COO64_RS01140 - mechanosensitive ion channel family protein, at 243,921 to 244,508 _RS01140 COO64_RS01145: COO64_RS01145 - ATP-binding cassette domain-containing protein, at 244,508 to 246,418 _RS01145 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 243.079 kb on + strand, within COO64_RS01130at 243.198 kb on + strandat 243.198 kb on + strandat 243.198 kb on + strandat 243.199 kb on - strandat 243.199 kb on - strandat 243.199 kb on - strandat 243.199 kb on - strandat 243.206 kb on + strandat 243.206 kb on + strandat 243.206 kb on + strandat 243.207 kb on - strandat 243.207 kb on - strandat 243.207 kb on - strandat 243.207 kb on - strandat 243.207 kb on - strandat 243.207 kb on - strandat 243.225 kb on + strandat 243.240 kb on + strandat 243.241 kb on - strandat 243.301 kb on - strand, within COO64_RS01135at 243.336 kb on + strand, within COO64_RS01135at 243.336 kb on + strand, within COO64_RS01135at 243.336 kb on + strand, within COO64_RS01135at 243.337 kb on - strand, within COO64_RS01135at 243.337 kb on - strand, within COO64_RS01135at 243.339 kb on - strand, within COO64_RS01135at 243.381 kb on + strand, within COO64_RS01135at 243.382 kb on - strand, within COO64_RS01135at 243.382 kb on - strand, within COO64_RS01135at 243.382 kb on - strand, within COO64_RS01135at 243.382 kb on - strand, within COO64_RS01135at 243.392 kb on + strand, within COO64_RS01135at 243.393 kb on - strand, within COO64_RS01135at 243.393 kb on - strand, within COO64_RS01135at 243.393 kb on - strand, within COO64_RS01135at 243.584 kb on + strand, within COO64_RS01135at 243.585 kb on - strand, within COO64_RS01135at 243.585 kb on - strand, within COO64_RS01135at 243.585 kb on - strand, within COO64_RS01135at 243.593 kb on + strand, within COO64_RS01135at 243.593 kb on + strand, within COO64_RS01135at 243.593 kb on + strand, within COO64_RS01135at 243.593 kb on + strand, within COO64_RS01135at 243.593 kb on + strand, within COO64_RS01135at 243.594 kb on - strand, within COO64_RS01135at 243.594 kb on - strand, within COO64_RS01135at 243.737 kb on + strand, within COO64_RS01135at 243.862 kb on - strandat 243.862 kb on - strandat 243.862 kb on - strandat 243.862 kb on - strandat 243.862 kb on - strandat 243.871 kb on + strandat 243.871 kb on + strandat 243.871 kb on + strandat 243.872 kb on - strandat 243.872 kb on - strandat 243.872 kb on - strandat 243.872 kb on - strandat 243.872 kb on - strandat 243.872 kb on - strandat 243.876 kb on + strandat 243.876 kb on + strandat 243.876 kb on + strandat 243.876 kb on + strandat 243.876 kb on + strandat 243.876 kb on + strandat 243.877 kb on - strandat 243.877 kb on - strandat 243.877 kb on - strandat 244.112 kb on + strand, within COO64_RS01140at 244.113 kb on - strand, within COO64_RS01140at 244.653 kb on + strandat 244.653 kb on + strandat 244.653 kb on + strandat 244.654 kb on - strandat 244.654 kb on - strandat 244.654 kb on - strandat 244.854 kb on + strand, within COO64_RS01145at 244.855 kb on - strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.875 kb on + strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 244.876 kb on - strand, within COO64_RS01145at 245.283 kb on + strand, within COO64_RS01145at 245.284 kb on - strand, within COO64_RS01145at 245.284 kb on - strand, within COO64_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB
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243,079 + COO64_RS01130 0.90 -1.1
243,198 + -0.8
243,198 + +0.2
243,198 + -0.3
243,199 - -0.5
243,199 - -0.4
243,199 - +0.5
243,199 - -0.7
243,206 + +0.1
243,206 + +0.2
243,206 + +0.2
243,207 - +0.2
243,207 - +0.0
243,207 - +1.4
243,207 - -0.1
243,207 - +2.1
243,207 - +0.1
243,225 + +0.6
243,240 + -1.6
243,241 - -1.8
243,301 - COO64_RS01135 0.15 +0.8
243,336 + COO64_RS01135 0.21 -1.2
243,336 + COO64_RS01135 0.21 -0.2
243,336 + COO64_RS01135 0.21 -0.4
243,337 - COO64_RS01135 0.21 +0.6
243,337 - COO64_RS01135 0.21 +0.4
243,339 - COO64_RS01135 0.21 -0.0
243,381 + COO64_RS01135 0.28 -0.2
243,382 - COO64_RS01135 0.28 +0.2
243,382 - COO64_RS01135 0.28 +0.1
243,382 - COO64_RS01135 0.28 +1.1
243,382 - COO64_RS01135 0.28 -1.1
243,392 + COO64_RS01135 0.30 -0.7
243,393 - COO64_RS01135 0.30 +0.5
243,393 - COO64_RS01135 0.30 -0.0
243,393 - COO64_RS01135 0.30 -0.9
243,584 + COO64_RS01135 0.60 +0.1
243,585 - COO64_RS01135 0.60 +0.1
243,585 - COO64_RS01135 0.60 -0.8
243,585 - COO64_RS01135 0.60 +0.6
243,593 + COO64_RS01135 0.61 +0.5
243,593 + COO64_RS01135 0.61 +0.5
243,593 + COO64_RS01135 0.61 -0.6
243,593 + COO64_RS01135 0.61 -0.3
243,593 + COO64_RS01135 0.61 -0.7
243,594 - COO64_RS01135 0.61 +0.2
243,594 - COO64_RS01135 0.61 -1.5
243,737 + COO64_RS01135 0.84 +0.5
243,862 - -0.4
243,862 - -0.2
243,862 - -0.1
243,862 - +0.0
243,862 - -0.1
243,871 + +0.5
243,871 + +0.5
243,871 + -1.7
243,872 - -0.3
243,872 - -0.1
243,872 - -0.1
243,872 - +0.8
243,872 - -0.3
243,872 - +0.7
243,876 + +0.0
243,876 + +1.0
243,876 + +0.1
243,876 + +1.1
243,876 + +0.6
243,876 + -0.5
243,877 - -1.2
243,877 - +1.4
243,877 - -0.0
244,112 + COO64_RS01140 0.32 -0.6
244,113 - COO64_RS01140 0.33 -0.5
244,653 + +0.2
244,653 + -0.4
244,653 + -0.5
244,654 - +1.1
244,654 - +0.5
244,654 - -0.1
244,854 + COO64_RS01145 0.18 +0.6
244,855 - COO64_RS01145 0.18 +0.2
244,875 + COO64_RS01145 0.19 -1.5
244,875 + COO64_RS01145 0.19 -1.4
244,875 + COO64_RS01145 0.19 +0.5
244,875 + COO64_RS01145 0.19 -0.1
244,875 + COO64_RS01145 0.19 -0.5
244,875 + COO64_RS01145 0.19 +0.1
244,875 + COO64_RS01145 0.19 -1.4
244,875 + COO64_RS01145 0.19 -1.1
244,875 + COO64_RS01145 0.19 -1.1
244,876 - COO64_RS01145 0.19 -0.1
244,876 - COO64_RS01145 0.19 -1.1
244,876 - COO64_RS01145 0.19 -0.5
244,876 - COO64_RS01145 0.19 +0.1
244,876 - COO64_RS01145 0.19 -1.1
244,876 - COO64_RS01145 0.19 -0.3
244,876 - COO64_RS01145 0.19 +0.1
245,283 + COO64_RS01145 0.41 +1.4
245,284 - COO64_RS01145 0.41 +0.4
245,284 - COO64_RS01145 0.41 -1.3

Or see this region's nucleotide sequence