Experiment: supernatant control, M9 with 0.25X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvP and gcvH are separated by 79 nucleotides gcvH and gcvT are separated by 46 nucleotides
COO64_RS00950: gcvP - aminomethyl-transferring glycine dehydrogenase, at 203,008 to 205,881
gcvP
COO64_RS00955: gcvH - glycine cleavage system protein GcvH, at 205,961 to 206,344
gcvH
COO64_RS00960: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 206,391 to 207,473
gcvT
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1 at 205.025 kb on + strand, within gcvP at 205.025 kb on + strand, within gcvP at 205.026 kb on - strand, within gcvP at 205.227 kb on - strand, within gcvP at 205.246 kb on + strand, within gcvP at 205.246 kb on + strand, within gcvP at 205.247 kb on - strand, within gcvP at 205.247 kb on - strand, within gcvP at 205.253 kb on + strand, within gcvP at 205.254 kb on - strand, within gcvP at 205.254 kb on - strand, within gcvP at 205.254 kb on - strand, within gcvP at 205.532 kb on + strand, within gcvP at 205.540 kb on - strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.541 kb on + strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.542 kb on - strand, within gcvP at 205.550 kb on + strand, within gcvP at 205.550 kb on + strand, within gcvP at 205.550 kb on + strand, within gcvP at 205.550 kb on + strand, within gcvP at 205.550 kb on + strand, within gcvP at 205.610 kb on + strand at 205.655 kb on + strand at 205.655 kb on + strand at 205.655 kb on + strand at 205.656 kb on - strand at 205.656 kb on - strand at 205.881 kb on + strand at 205.882 kb on - strand at 205.882 kb on - strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.925 kb on + strand at 205.926 kb on - strand at 205.926 kb on - strand at 205.934 kb on + strand at 205.934 kb on + strand at 205.934 kb on + strand at 205.935 kb on - strand at 205.935 kb on - strand at 205.935 kb on - strand at 205.935 kb on - strand at 205.962 kb on + strand at 206.056 kb on - strand, within gcvH at 206.056 kb on - strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.133 kb on + strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.134 kb on - strand, within gcvH at 206.386 kb on + strand at 206.386 kb on + strand at 206.386 kb on + strand at 206.386 kb on + strand at 206.386 kb on + strand at 206.386 kb on + strand at 206.386 kb on + strand at 206.387 kb on - strand at 206.528 kb on + strand, within gcvT at 206.528 kb on + strand, within gcvT at 206.528 kb on + strand, within gcvT at 206.529 kb on - strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.540 kb on + strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.541 kb on - strand, within gcvT at 206.598 kb on + strand, within gcvT at 206.598 kb on + strand, within gcvT at 206.599 kb on - strand, within gcvT at 206.771 kb on - strand, within gcvT at 206.771 kb on - strand, within gcvT at 206.872 kb on - strand, within gcvT at 206.872 kb on - strand, within gcvT at 206.911 kb on + strand, within gcvT at 206.912 kb on - strand, within gcvT at 207.169 kb on + strand, within gcvT at 207.220 kb on + strand, within gcvT at 207.220 kb on + strand, within gcvT at 207.221 kb on - strand, within gcvT at 207.221 kb on - strand, within gcvT at 207.221 kb on - strand, within gcvT at 207.320 kb on + strand, within gcvT at 207.321 kb on - strand, within gcvT at 207.321 kb on - strand, within gcvT at 207.327 kb on + strand, within gcvT at 207.327 kb on + strand, within gcvT at 207.327 kb on + strand, within gcvT at 207.327 kb on + strand, within gcvT at 207.327 kb on + strand, within gcvT at 207.328 kb on - strand, within gcvT at 207.328 kb on - strand, within gcvT at 207.328 kb on - strand, within gcvT at 207.328 kb on - strand, within gcvT
Per-strain Table
Position Strand Gene LocusTag Fraction supernatant control, M9 with 0.25X LB remove 205,025 + gcvP COO64_RS00950 0.70 +0.0 205,025 + gcvP COO64_RS00950 0.70 -0.3 205,026 - gcvP COO64_RS00950 0.70 -0.4 205,227 - gcvP COO64_RS00950 0.77 +0.5 205,246 + gcvP COO64_RS00950 0.78 -0.1 205,246 + gcvP COO64_RS00950 0.78 -0.1 205,247 - gcvP COO64_RS00950 0.78 +0.5 205,247 - gcvP COO64_RS00950 0.78 +0.0 205,253 + gcvP COO64_RS00950 0.78 -0.3 205,254 - gcvP COO64_RS00950 0.78 +0.3 205,254 - gcvP COO64_RS00950 0.78 +0.4 205,254 - gcvP COO64_RS00950 0.78 -0.3 205,532 + gcvP COO64_RS00950 0.88 -0.8 205,540 - gcvP COO64_RS00950 0.88 +1.0 205,541 + gcvP COO64_RS00950 0.88 -1.1 205,541 + gcvP COO64_RS00950 0.88 -0.3 205,541 + gcvP COO64_RS00950 0.88 +0.0 205,541 + gcvP COO64_RS00950 0.88 +0.3 205,541 + gcvP COO64_RS00950 0.88 -0.5 205,541 + gcvP COO64_RS00950 0.88 +0.6 205,542 - gcvP COO64_RS00950 0.88 -0.1 205,542 - gcvP COO64_RS00950 0.88 +0.9 205,542 - gcvP COO64_RS00950 0.88 +0.6 205,542 - gcvP COO64_RS00950 0.88 +0.3 205,542 - gcvP COO64_RS00950 0.88 +0.8 205,542 - gcvP COO64_RS00950 0.88 -2.5 205,542 - gcvP COO64_RS00950 0.88 +0.3 205,542 - gcvP COO64_RS00950 0.88 +0.4 205,550 + gcvP COO64_RS00950 0.88 +0.3 205,550 + gcvP COO64_RS00950 0.88 -0.1 205,550 + gcvP COO64_RS00950 0.88 -0.9 205,550 + gcvP COO64_RS00950 0.88 +0.3 205,550 + gcvP COO64_RS00950 0.88 -0.6 205,610 + -0.9 205,655 + -0.1 205,655 + +0.8 205,655 + +0.5 205,656 - +1.0 205,656 - -0.5 205,881 + +1.2 205,882 - -0.3 205,882 - +0.0 205,925 + -0.7 205,925 + -0.3 205,925 + -1.4 205,925 + -0.9 205,925 + +0.2 205,925 + -0.5 205,926 - +1.7 205,926 - +0.0 205,934 + -0.9 205,934 + -0.8 205,934 + +0.5 205,935 - -1.0 205,935 - +0.4 205,935 - +0.5 205,935 - +0.4 205,962 + +0.3 206,056 - gcvH COO64_RS00955 0.25 +0.5 206,056 - gcvH COO64_RS00955 0.25 -1.4 206,133 + gcvH COO64_RS00955 0.45 -0.2 206,133 + gcvH COO64_RS00955 0.45 +0.0 206,133 + gcvH COO64_RS00955 0.45 -0.4 206,133 + gcvH COO64_RS00955 0.45 -1.4 206,133 + gcvH COO64_RS00955 0.45 -1.1 206,133 + gcvH COO64_RS00955 0.45 +0.3 206,133 + gcvH COO64_RS00955 0.45 -2.1 206,133 + gcvH COO64_RS00955 0.45 -1.0 206,133 + gcvH COO64_RS00955 0.45 +0.6 206,133 + gcvH COO64_RS00955 0.45 -0.8 206,133 + gcvH COO64_RS00955 0.45 -0.6 206,133 + gcvH COO64_RS00955 0.45 +0.3 206,133 + gcvH COO64_RS00955 0.45 +0.1 206,133 + gcvH COO64_RS00955 0.45 -0.3 206,133 + gcvH COO64_RS00955 0.45 +0.3 206,133 + gcvH COO64_RS00955 0.45 +0.4 206,133 + gcvH COO64_RS00955 0.45 -1.1 206,133 + gcvH COO64_RS00955 0.45 -0.2 206,133 + gcvH COO64_RS00955 0.45 -0.3 206,134 - gcvH COO64_RS00955 0.45 -0.7 206,134 - gcvH COO64_RS00955 0.45 -0.5 206,134 - gcvH COO64_RS00955 0.45 +0.0 206,134 - gcvH COO64_RS00955 0.45 +0.1 206,134 - gcvH COO64_RS00955 0.45 +1.0 206,134 - gcvH COO64_RS00955 0.45 -0.2 206,134 - gcvH COO64_RS00955 0.45 +0.3 206,134 - gcvH COO64_RS00955 0.45 +0.5 206,134 - gcvH COO64_RS00955 0.45 -0.0 206,134 - gcvH COO64_RS00955 0.45 -0.7 206,134 - gcvH COO64_RS00955 0.45 +0.3 206,134 - gcvH COO64_RS00955 0.45 -0.2 206,134 - gcvH COO64_RS00955 0.45 -1.1 206,134 - gcvH COO64_RS00955 0.45 -0.2 206,134 - gcvH COO64_RS00955 0.45 -0.9 206,134 - gcvH COO64_RS00955 0.45 -2.2 206,134 - gcvH COO64_RS00955 0.45 -0.9 206,134 - gcvH COO64_RS00955 0.45 +0.1 206,134 - gcvH COO64_RS00955 0.45 -0.5 206,134 - gcvH COO64_RS00955 0.45 -0.2 206,386 + +0.0 206,386 + +0.0 206,386 + -0.2 206,386 + +0.9 206,386 + -0.2 206,386 + -1.8 206,386 + -0.4 206,387 - +0.6 206,528 + gcvT COO64_RS00960 0.13 -0.6 206,528 + gcvT COO64_RS00960 0.13 +0.1 206,528 + gcvT COO64_RS00960 0.13 -0.8 206,529 - gcvT COO64_RS00960 0.13 +0.1 206,540 + gcvT COO64_RS00960 0.14 +1.2 206,540 + gcvT COO64_RS00960 0.14 +0.2 206,540 + gcvT COO64_RS00960 0.14 -0.1 206,540 + gcvT COO64_RS00960 0.14 -0.5 206,540 + gcvT COO64_RS00960 0.14 -0.6 206,540 + gcvT COO64_RS00960 0.14 +0.7 206,540 + gcvT COO64_RS00960 0.14 +0.3 206,541 - gcvT COO64_RS00960 0.14 -0.2 206,541 - gcvT COO64_RS00960 0.14 +0.9 206,541 - gcvT COO64_RS00960 0.14 +0.4 206,541 - gcvT COO64_RS00960 0.14 +0.5 206,541 - gcvT COO64_RS00960 0.14 -0.9 206,541 - gcvT COO64_RS00960 0.14 -0.3 206,598 + gcvT COO64_RS00960 0.19 +0.3 206,598 + gcvT COO64_RS00960 0.19 +0.6 206,599 - gcvT COO64_RS00960 0.19 +0.3 206,771 - gcvT COO64_RS00960 0.35 -0.7 206,771 - gcvT COO64_RS00960 0.35 +0.5 206,872 - gcvT COO64_RS00960 0.44 -1.0 206,872 - gcvT COO64_RS00960 0.44 -0.1 206,911 + gcvT COO64_RS00960 0.48 +0.1 206,912 - gcvT COO64_RS00960 0.48 +0.6 207,169 + gcvT COO64_RS00960 0.72 -0.5 207,220 + gcvT COO64_RS00960 0.77 -0.1 207,220 + gcvT COO64_RS00960 0.77 -0.1 207,221 - gcvT COO64_RS00960 0.77 +0.0 207,221 - gcvT COO64_RS00960 0.77 -0.8 207,221 - gcvT COO64_RS00960 0.77 +0.1 207,320 + gcvT COO64_RS00960 0.86 -0.3 207,321 - gcvT COO64_RS00960 0.86 +0.2 207,321 - gcvT COO64_RS00960 0.86 -0.4 207,327 + gcvT COO64_RS00960 0.86 -1.4 207,327 + gcvT COO64_RS00960 0.86 +0.9 207,327 + gcvT COO64_RS00960 0.86 -0.7 207,327 + gcvT COO64_RS00960 0.86 -0.4 207,327 + gcvT COO64_RS00960 0.86 +0.2 207,328 - gcvT COO64_RS00960 0.87 -0.8 207,328 - gcvT COO64_RS00960 0.87 -1.0 207,328 - gcvT COO64_RS00960 0.87 +0.2 207,328 - gcvT COO64_RS00960 0.87 -1.7
Or see this region's nucleotide sequence