Experiment: Tara gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05197 and BACOVA_05198 are separated by 58 nucleotides BACOVA_05198 and BACOVA_05199 are separated by 43 nucleotides BACOVA_05199 and BACOVA_05200 are separated by 3 nucleotides
BACOVA_05197: BACOVA_05197 - outer membrane protein transport protein, Ompp1/FadL/TodX family, at 696,142 to 697,413
_05197
BACOVA_05198: BACOVA_05198 - tetratricopeptide repeat protein, at 697,472 to 698,797
_05198
BACOVA_05199: BACOVA_05199 - hypothetical protein, at 698,841 to 699,455
_05199
BACOVA_05200: BACOVA_05200 - CBS domain protein, at 699,459 to 700,715
_05200
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1 at 697.443 kb on + strand at 697.443 kb on + strand at 697.445 kb on + strand at 697.445 kb on + strand at 697.445 kb on + strand at 699.468 kb on + strand at 699.468 kb on + strand at 699.471 kb on - strand at 699.471 kb on - strand at 699.579 kb on - strand at 699.597 kb on - strand, within BACOVA_05200 at 699.629 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.666 kb on + strand, within BACOVA_05200 at 699.667 kb on - strand, within BACOVA_05200 at 699.671 kb on + strand, within BACOVA_05200 at 699.671 kb on + strand, within BACOVA_05200 at 699.672 kb on - strand, within BACOVA_05200 at 699.723 kb on - strand, within BACOVA_05200 at 699.768 kb on - strand, within BACOVA_05200 at 699.770 kb on + strand, within BACOVA_05200 at 699.770 kb on + strand, within BACOVA_05200
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C) remove 697,443 + +0.0 697,443 + -0.2 697,445 + -1.2 697,445 + -0.2 697,445 + -0.3 699,468 + +0.3 699,468 + -0.8 699,471 - +0.0 699,471 - +0.1 699,579 - +0.0 699,597 - BACOVA_05200 0.11 +0.7 699,629 + BACOVA_05200 0.14 +0.1 699,666 + BACOVA_05200 0.16 -0.1 699,666 + BACOVA_05200 0.16 -1.0 699,666 + BACOVA_05200 0.16 -0.5 699,666 + BACOVA_05200 0.16 +0.3 699,667 - BACOVA_05200 0.17 -0.6 699,671 + BACOVA_05200 0.17 -0.9 699,671 + BACOVA_05200 0.17 -0.4 699,672 - BACOVA_05200 0.17 +0.7 699,723 - BACOVA_05200 0.21 -1.1 699,768 - BACOVA_05200 0.25 -2.0 699,770 + BACOVA_05200 0.25 +1.2 699,770 + BACOVA_05200 0.25 -1.6
Or see this region's nucleotide sequence