Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04607

Experiment: Tara gum 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04606 and BACOVA_04607 are separated by 45 nucleotidesBACOVA_04607 and BACOVA_04608 are separated by 8 nucleotides BACOVA_04606: BACOVA_04606 - hypothetical protein, at 3 to 551 _04606 BACOVA_04607: BACOVA_04607 - plant Basic Secretory Protein, at 597 to 1,361 _04607 BACOVA_04608: BACOVA_04608 - putative alpha-1,2-mannosidase, at 1,370 to 4,627 _04608 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.037 kb on + strandat 0.038 kb on - strandat 0.064 kb on - strand, within BACOVA_04606at 0.064 kb on - strand, within BACOVA_04606at 0.064 kb on - strand, within BACOVA_04606at 0.105 kb on + strand, within BACOVA_04606at 0.106 kb on - strand, within BACOVA_04606at 0.161 kb on + strand, within BACOVA_04606at 0.173 kb on + strand, within BACOVA_04606at 0.174 kb on - strand, within BACOVA_04606at 0.279 kb on + strand, within BACOVA_04606at 0.279 kb on + strand, within BACOVA_04606at 0.280 kb on - strand, within BACOVA_04606at 0.280 kb on - strand, within BACOVA_04606at 0.284 kb on - strand, within BACOVA_04606at 0.284 kb on - strand, within BACOVA_04606at 0.306 kb on + strand, within BACOVA_04606at 0.335 kb on + strand, within BACOVA_04606at 0.378 kb on + strand, within BACOVA_04606at 0.378 kb on + strand, within BACOVA_04606at 0.409 kb on + strand, within BACOVA_04606at 0.409 kb on + strand, within BACOVA_04606at 0.416 kb on + strand, within BACOVA_04606at 0.416 kb on + strand, within BACOVA_04606at 0.423 kb on + strand, within BACOVA_04606at 0.424 kb on - strand, within BACOVA_04606at 0.428 kb on + strand, within BACOVA_04606at 0.428 kb on + strand, within BACOVA_04606at 0.440 kb on + strand, within BACOVA_04606at 0.442 kb on + strand, within BACOVA_04606at 0.445 kb on + strand, within BACOVA_04606at 0.457 kb on + strand, within BACOVA_04606at 0.458 kb on - strand, within BACOVA_04606at 0.458 kb on - strand, within BACOVA_04606at 0.546 kb on - strandat 0.550 kb on - strandat 0.558 kb on - strandat 0.586 kb on - strandat 0.590 kb on + strandat 0.591 kb on - strandat 0.596 kb on + strandat 0.597 kb on - strandat 0.597 kb on - strandat 0.672 kb on + strandat 0.687 kb on - strand, within BACOVA_04607at 0.701 kb on + strand, within BACOVA_04607at 0.732 kb on + strand, within BACOVA_04607at 0.762 kb on + strand, within BACOVA_04607at 0.763 kb on - strand, within BACOVA_04607at 0.821 kb on + strand, within BACOVA_04607at 0.841 kb on + strand, within BACOVA_04607at 0.842 kb on - strand, within BACOVA_04607at 0.842 kb on - strand, within BACOVA_04607at 0.848 kb on + strand, within BACOVA_04607at 0.848 kb on + strand, within BACOVA_04607at 0.849 kb on - strand, within BACOVA_04607at 0.927 kb on - strand, within BACOVA_04607at 0.986 kb on - strand, within BACOVA_04607at 0.986 kb on - strand, within BACOVA_04607at 1.012 kb on - strand, within BACOVA_04607at 1.093 kb on + strand, within BACOVA_04607at 1.093 kb on + strand, within BACOVA_04607at 1.094 kb on - strand, within BACOVA_04607at 1.125 kb on - strand, within BACOVA_04607at 1.149 kb on + strand, within BACOVA_04607at 1.223 kb on + strand, within BACOVA_04607at 1.223 kb on + strand, within BACOVA_04607at 1.275 kb on - strand, within BACOVA_04607at 1.305 kb on - strandat 1.348 kb on + strandat 1.349 kb on - strandat 1.349 kb on - strandat 1.366 kb on - strandat 1.366 kb on - strandat 1.376 kb on - strandat 1.378 kb on + strandat 1.378 kb on + strandat 1.466 kb on + strandat 1.466 kb on + strandat 1.508 kb on + strandat 1.508 kb on + strandat 1.562 kb on - strandat 1.564 kb on + strandat 1.565 kb on - strandat 1.568 kb on + strandat 1.571 kb on + strandat 1.572 kb on - strandat 1.591 kb on + strandat 1.592 kb on - strandat 1.596 kb on - strandat 1.597 kb on + strandat 1.598 kb on - strandat 1.736 kb on + strand, within BACOVA_04608at 1.781 kb on + strand, within BACOVA_04608at 1.813 kb on - strand, within BACOVA_04608at 1.846 kb on + strand, within BACOVA_04608at 1.862 kb on + strand, within BACOVA_04608at 1.906 kb on + strand, within BACOVA_04608at 1.907 kb on - strand, within BACOVA_04608at 1.971 kb on - strand, within BACOVA_04608at 2.005 kb on + strand, within BACOVA_04608at 2.054 kb on - strand, within BACOVA_04608at 2.079 kb on - strand, within BACOVA_04608at 2.084 kb on - strand, within BACOVA_04608at 2.105 kb on + strand, within BACOVA_04608at 2.123 kb on - strand, within BACOVA_04608at 2.150 kb on - strand, within BACOVA_04608at 2.176 kb on - strand, within BACOVA_04608at 2.185 kb on + strand, within BACOVA_04608at 2.221 kb on + strand, within BACOVA_04608at 2.263 kb on + strand, within BACOVA_04608at 2.300 kb on + strand, within BACOVA_04608at 2.302 kb on + strand, within BACOVA_04608at 2.339 kb on + strand, within BACOVA_04608

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C)
remove
37 + +0.4
38 - +1.2
64 - BACOVA_04606 0.11 -0.8
64 - BACOVA_04606 0.11 +1.0
64 - BACOVA_04606 0.11 -0.1
105 + BACOVA_04606 0.19 +0.5
106 - BACOVA_04606 0.19 +1.4
161 + BACOVA_04606 0.29 -1.4
173 + BACOVA_04606 0.31 -0.2
174 - BACOVA_04606 0.31 +1.0
279 + BACOVA_04606 0.50 -1.3
279 + BACOVA_04606 0.50 +1.6
280 - BACOVA_04606 0.50 -0.4
280 - BACOVA_04606 0.50 +0.2
284 - BACOVA_04606 0.51 +0.1
284 - BACOVA_04606 0.51 -0.8
306 + BACOVA_04606 0.55 -1.4
335 + BACOVA_04606 0.60 -0.4
378 + BACOVA_04606 0.68 -2.1
378 + BACOVA_04606 0.68 -0.9
409 + BACOVA_04606 0.74 -1.4
409 + BACOVA_04606 0.74 -1.5
416 + BACOVA_04606 0.75 -0.8
416 + BACOVA_04606 0.75 -0.7
423 + BACOVA_04606 0.77 -0.7
424 - BACOVA_04606 0.77 -0.2
428 + BACOVA_04606 0.77 -1.4
428 + BACOVA_04606 0.77 -1.0
440 + BACOVA_04606 0.80 +0.9
442 + BACOVA_04606 0.80 -2.3
445 + BACOVA_04606 0.81 -0.7
457 + BACOVA_04606 0.83 -1.1
458 - BACOVA_04606 0.83 -0.2
458 - BACOVA_04606 0.83 +0.6
546 - -0.2
550 - +1.3
558 - +1.0
586 - +0.3
590 + -0.1
591 - +0.4
596 + -0.6
597 - +0.3
597 - -1.1
672 + -1.0
687 - BACOVA_04607 0.12 +0.9
701 + BACOVA_04607 0.14 -1.0
732 + BACOVA_04607 0.18 -0.2
762 + BACOVA_04607 0.22 -0.7
763 - BACOVA_04607 0.22 +0.5
821 + BACOVA_04607 0.29 -2.4
841 + BACOVA_04607 0.32 -2.4
842 - BACOVA_04607 0.32 -0.3
842 - BACOVA_04607 0.32 +0.8
848 + BACOVA_04607 0.33 +0.3
848 + BACOVA_04607 0.33 +0.2
849 - BACOVA_04607 0.33 -0.4
927 - BACOVA_04607 0.43 +0.3
986 - BACOVA_04607 0.51 -0.3
986 - BACOVA_04607 0.51 -1.0
1,012 - BACOVA_04607 0.54 +1.0
1,093 + BACOVA_04607 0.65 -1.1
1,093 + BACOVA_04607 0.65 -1.5
1,094 - BACOVA_04607 0.65 +0.1
1,125 - BACOVA_04607 0.69 -0.3
1,149 + BACOVA_04607 0.72 -0.9
1,223 + BACOVA_04607 0.82 -0.6
1,223 + BACOVA_04607 0.82 -0.9
1,275 - BACOVA_04607 0.89 +1.2
1,305 - -2.1
1,348 + -2.3
1,349 - +0.6
1,349 - +0.8
1,366 - +1.5
1,366 - -0.4
1,376 - +0.2
1,378 + -1.6
1,378 + -0.7
1,466 + +0.5
1,466 + -2.4
1,508 + -1.3
1,508 + -0.9
1,562 - -1.2
1,564 + -0.7
1,565 - +0.5
1,568 + -1.3
1,571 + +0.7
1,572 - -0.0
1,591 + +0.2
1,592 - +0.1
1,596 - +1.0
1,597 + +0.2
1,598 - +0.1
1,736 + BACOVA_04608 0.11 -0.1
1,781 + BACOVA_04608 0.13 -0.4
1,813 - BACOVA_04608 0.14 -0.4
1,846 + BACOVA_04608 0.15 +0.5
1,862 + BACOVA_04608 0.15 +1.6
1,906 + BACOVA_04608 0.16 -0.3
1,907 - BACOVA_04608 0.16 -0.7
1,971 - BACOVA_04608 0.18 -0.4
2,005 + BACOVA_04608 0.19 +0.0
2,054 - BACOVA_04608 0.21 -0.5
2,079 - BACOVA_04608 0.22 +0.7
2,084 - BACOVA_04608 0.22 -1.1
2,105 + BACOVA_04608 0.23 +0.1
2,123 - BACOVA_04608 0.23 -0.3
2,150 - BACOVA_04608 0.24 +0.1
2,176 - BACOVA_04608 0.25 -0.2
2,185 + BACOVA_04608 0.25 +0.5
2,221 + BACOVA_04608 0.26 -1.4
2,263 + BACOVA_04608 0.27 +0.6
2,300 + BACOVA_04608 0.29 -0.8
2,302 + BACOVA_04608 0.29 +0.1
2,339 + BACOVA_04608 0.30 -1.6

Or see this region's nucleotide sequence