Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03761

Experiment: Tara gum 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03759 and BACOVA_03761 are separated by 246 nucleotidesBACOVA_03761 and BACOVA_03760 overlap by 41 nucleotidesBACOVA_03760 and BACOVA_03762 are separated by 320 nucleotides BACOVA_03759: BACOVA_03759 - glycerophosphodiester phosphodiesterase family protein, at 98,245 to 99,012 _03759 BACOVA_03761: BACOVA_03761 - thioredoxin, at 99,259 to 99,555 _03761 BACOVA_03760: BACOVA_03760 - hypothetical protein, at 99,515 to 99,649 _03760 BACOVA_03762: BACOVA_03762 - diaminopimelate epimerase, at 99,970 to 100,779 _03762 Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 98.282 kb on + strandat 98.282 kb on + strandat 98.367 kb on + strand, within BACOVA_03759at 98.368 kb on - strand, within BACOVA_03759at 98.368 kb on - strand, within BACOVA_03759at 98.405 kb on - strand, within BACOVA_03759at 98.424 kb on - strand, within BACOVA_03759at 98.433 kb on + strand, within BACOVA_03759at 98.470 kb on + strand, within BACOVA_03759at 98.471 kb on - strand, within BACOVA_03759at 98.471 kb on - strand, within BACOVA_03759at 98.520 kb on + strand, within BACOVA_03759at 98.520 kb on + strand, within BACOVA_03759at 98.561 kb on - strand, within BACOVA_03759at 98.583 kb on + strand, within BACOVA_03759at 98.584 kb on - strand, within BACOVA_03759at 98.698 kb on + strand, within BACOVA_03759at 98.698 kb on + strand, within BACOVA_03759at 98.698 kb on + strand, within BACOVA_03759at 98.700 kb on + strand, within BACOVA_03759at 98.701 kb on - strand, within BACOVA_03759at 98.799 kb on - strand, within BACOVA_03759at 98.894 kb on + strand, within BACOVA_03759at 98.926 kb on - strand, within BACOVA_03759at 98.984 kb on + strandat 99.011 kb on - strandat 99.044 kb on - strandat 99.044 kb on - strandat 99.142 kb on - strandat 99.142 kb on - strandat 99.185 kb on + strandat 99.185 kb on + strandat 99.274 kb on + strandat 99.300 kb on + strand, within BACOVA_03761at 99.301 kb on - strand, within BACOVA_03761at 99.310 kb on + strand, within BACOVA_03761at 99.310 kb on + strand, within BACOVA_03761at 99.368 kb on - strand, within BACOVA_03761at 99.393 kb on + strand, within BACOVA_03761at 99.415 kb on + strand, within BACOVA_03761at 99.470 kb on + strand, within BACOVA_03761at 99.497 kb on - strand, within BACOVA_03761at 99.497 kb on - strand, within BACOVA_03761at 99.523 kb on - strandat 99.550 kb on - strandat 99.555 kb on + strandat 99.556 kb on - strand, within BACOVA_03760at 99.575 kb on - strand, within BACOVA_03760at 99.580 kb on + strand, within BACOVA_03760at 99.587 kb on - strand, within BACOVA_03760at 99.598 kb on + strand, within BACOVA_03760at 99.643 kb on + strandat 99.687 kb on + strandat 99.741 kb on + strandat 99.741 kb on + strandat 99.742 kb on - strandat 99.793 kb on - strandat 99.824 kb on - strandat 99.882 kb on + strandat 100.019 kb on - strandat 100.023 kb on - strandat 100.024 kb on + strandat 100.024 kb on + strandat 100.025 kb on - strandat 100.025 kb on - strandat 100.025 kb on - strandat 100.025 kb on - strandat 100.025 kb on - strandat 100.116 kb on + strand, within BACOVA_03762at 100.117 kb on - strand, within BACOVA_03762at 100.118 kb on + strand, within BACOVA_03762at 100.119 kb on - strand, within BACOVA_03762at 100.222 kb on + strand, within BACOVA_03762at 100.223 kb on - strand, within BACOVA_03762at 100.223 kb on - strand, within BACOVA_03762at 100.223 kb on - strand, within BACOVA_03762at 100.227 kb on - strand, within BACOVA_03762at 100.227 kb on - strand, within BACOVA_03762at 100.229 kb on - strand, within BACOVA_03762at 100.235 kb on - strand, within BACOVA_03762at 100.447 kb on - strand, within BACOVA_03762at 100.447 kb on - strand, within BACOVA_03762at 100.553 kb on + strand, within BACOVA_03762at 100.554 kb on - strand, within BACOVA_03762

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C)
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98,282 + +1.5
98,282 + -0.1
98,367 + BACOVA_03759 0.16 -1.2
98,368 - BACOVA_03759 0.16 -1.6
98,368 - BACOVA_03759 0.16 +0.0
98,405 - BACOVA_03759 0.21 +0.3
98,424 - BACOVA_03759 0.23 -0.5
98,433 + BACOVA_03759 0.24 -0.7
98,470 + BACOVA_03759 0.29 -0.3
98,471 - BACOVA_03759 0.29 +1.1
98,471 - BACOVA_03759 0.29 -0.3
98,520 + BACOVA_03759 0.36 -0.3
98,520 + BACOVA_03759 0.36 -0.3
98,561 - BACOVA_03759 0.41 +0.4
98,583 + BACOVA_03759 0.44 +0.1
98,584 - BACOVA_03759 0.44 -1.7
98,698 + BACOVA_03759 0.59 +0.1
98,698 + BACOVA_03759 0.59 +0.1
98,698 + BACOVA_03759 0.59 +0.3
98,700 + BACOVA_03759 0.59 +0.1
98,701 - BACOVA_03759 0.59 -2.0
98,799 - BACOVA_03759 0.72 -0.4
98,894 + BACOVA_03759 0.85 +0.5
98,926 - BACOVA_03759 0.89 -0.3
98,984 + +2.0
99,011 - +0.0
99,044 - +0.1
99,044 - -0.0
99,142 - -1.5
99,142 - -1.0
99,185 + -0.6
99,185 + +1.1
99,274 + -0.2
99,300 + BACOVA_03761 0.14 +0.1
99,301 - BACOVA_03761 0.14 +1.5
99,310 + BACOVA_03761 0.17 +0.3
99,310 + BACOVA_03761 0.17 +0.8
99,368 - BACOVA_03761 0.37 -0.4
99,393 + BACOVA_03761 0.45 +0.8
99,415 + BACOVA_03761 0.53 +0.8
99,470 + BACOVA_03761 0.71 -1.0
99,497 - BACOVA_03761 0.80 -0.3
99,497 - BACOVA_03761 0.80 +0.3
99,523 - +0.8
99,550 - -0.8
99,555 + -1.3
99,556 - BACOVA_03760 0.30 -0.3
99,575 - BACOVA_03760 0.44 +0.4
99,580 + BACOVA_03760 0.48 -1.3
99,587 - BACOVA_03760 0.53 -1.2
99,598 + BACOVA_03760 0.61 -1.0
99,643 + -0.4
99,687 + -0.3
99,741 + -0.5
99,741 + -0.6
99,742 - -0.6
99,793 - +0.8
99,824 - -0.4
99,882 + -1.0
100,019 - +1.0
100,023 - +0.1
100,024 + -1.4
100,024 + +1.0
100,025 - -1.6
100,025 - -1.0
100,025 - -1.7
100,025 - -0.5
100,025 - -1.0
100,116 + BACOVA_03762 0.18 +0.3
100,117 - BACOVA_03762 0.18 +1.2
100,118 + BACOVA_03762 0.18 -0.4
100,119 - BACOVA_03762 0.18 -1.6
100,222 + BACOVA_03762 0.31 -0.5
100,223 - BACOVA_03762 0.31 +0.6
100,223 - BACOVA_03762 0.31 +0.3
100,223 - BACOVA_03762 0.31 -0.2
100,227 - BACOVA_03762 0.32 +0.3
100,227 - BACOVA_03762 0.32 -0.0
100,229 - BACOVA_03762 0.32 +0.8
100,235 - BACOVA_03762 0.33 +0.3
100,447 - BACOVA_03762 0.59 -1.2
100,447 - BACOVA_03762 0.59 -0.6
100,553 + BACOVA_03762 0.72 -1.5
100,554 - BACOVA_03762 0.72 -0.6

Or see this region's nucleotide sequence