Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02985

Experiment: Tara gum 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02984 and BACOVA_02985 are separated by 101 nucleotidesBACOVA_02985 and BACOVA_02986 are separated by 101 nucleotides BACOVA_02984: BACOVA_02984 - GMP synthase (glutamine-hydrolyzing) domain protein, at 63,756 to 65,063 _02984 BACOVA_02985: BACOVA_02985 - hypothetical protein, at 65,165 to 65,356 _02985 BACOVA_02986: BACOVA_02986 - site-specific recombinase, phage integrase family, at 65,458 to 66,675 _02986 Position (kb) 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1at 64.211 kb on + strand, within BACOVA_02984at 64.212 kb on - strand, within BACOVA_02984at 64.212 kb on - strand, within BACOVA_02984at 64.261 kb on + strand, within BACOVA_02984at 64.267 kb on + strand, within BACOVA_02984at 64.267 kb on + strand, within BACOVA_02984at 64.268 kb on - strand, within BACOVA_02984at 64.268 kb on - strand, within BACOVA_02984at 64.275 kb on - strand, within BACOVA_02984at 64.275 kb on - strand, within BACOVA_02984at 64.357 kb on + strand, within BACOVA_02984at 64.358 kb on - strand, within BACOVA_02984at 64.358 kb on - strand, within BACOVA_02984at 64.363 kb on + strand, within BACOVA_02984at 64.382 kb on + strand, within BACOVA_02984at 64.396 kb on + strand, within BACOVA_02984at 64.499 kb on + strand, within BACOVA_02984at 64.502 kb on + strand, within BACOVA_02984at 64.503 kb on - strand, within BACOVA_02984at 64.503 kb on - strand, within BACOVA_02984at 64.503 kb on - strand, within BACOVA_02984at 64.514 kb on + strand, within BACOVA_02984at 64.541 kb on + strand, within BACOVA_02984at 64.562 kb on + strand, within BACOVA_02984at 64.562 kb on + strand, within BACOVA_02984at 64.563 kb on - strand, within BACOVA_02984at 64.563 kb on - strand, within BACOVA_02984at 64.567 kb on + strand, within BACOVA_02984at 64.567 kb on + strand, within BACOVA_02984at 64.568 kb on - strand, within BACOVA_02984at 64.568 kb on - strand, within BACOVA_02984at 64.589 kb on - strand, within BACOVA_02984at 64.603 kb on + strand, within BACOVA_02984at 64.625 kb on + strand, within BACOVA_02984at 64.657 kb on + strand, within BACOVA_02984at 64.664 kb on - strand, within BACOVA_02984at 64.664 kb on - strand, within BACOVA_02984at 64.714 kb on + strand, within BACOVA_02984at 64.715 kb on - strand, within BACOVA_02984at 64.724 kb on - strand, within BACOVA_02984at 64.724 kb on - strand, within BACOVA_02984at 64.731 kb on - strand, within BACOVA_02984at 64.731 kb on - strand, within BACOVA_02984at 64.731 kb on - strand, within BACOVA_02984at 64.733 kb on + strand, within BACOVA_02984at 64.733 kb on + strand, within BACOVA_02984at 64.808 kb on + strand, within BACOVA_02984at 64.824 kb on + strand, within BACOVA_02984at 64.834 kb on + strand, within BACOVA_02984at 64.925 kb on + strand, within BACOVA_02984at 64.925 kb on + strand, within BACOVA_02984at 64.937 kb on + strandat 64.937 kb on + strandat 64.959 kb on - strandat 64.973 kb on - strandat 64.983 kb on - strandat 64.983 kb on - strandat 65.006 kb on - strandat 65.006 kb on - strandat 65.020 kb on - strandat 65.040 kb on - strandat 65.050 kb on + strandat 65.116 kb on + strandat 65.123 kb on - strandat 65.172 kb on + strandat 65.187 kb on + strand, within BACOVA_02985at 65.293 kb on + strand, within BACOVA_02985at 65.294 kb on - strand, within BACOVA_02985at 65.294 kb on - strand, within BACOVA_02985at 65.296 kb on - strand, within BACOVA_02985at 65.402 kb on + strandat 65.403 kb on - strandat 65.403 kb on - strandat 65.405 kb on + strandat 65.409 kb on + strandat 65.410 kb on - strandat 65.421 kb on + strandat 65.447 kb on - strandat 65.447 kb on - strandat 65.450 kb on + strandat 65.451 kb on - strandat 65.452 kb on + strandat 65.478 kb on - strandat 65.478 kb on - strandat 65.491 kb on - strandat 65.494 kb on + strandat 65.494 kb on + strandat 65.494 kb on + strandat 65.494 kb on + strandat 65.494 kb on + strandat 65.495 kb on - strandat 65.496 kb on + strandat 65.496 kb on + strandat 65.496 kb on + strandat 65.497 kb on - strandat 65.497 kb on - strandat 65.501 kb on + strandat 65.543 kb on + strandat 65.590 kb on + strand, within BACOVA_02986at 65.592 kb on + strand, within BACOVA_02986at 65.592 kb on + strand, within BACOVA_02986at 65.593 kb on - strand, within BACOVA_02986at 65.593 kb on - strand, within BACOVA_02986at 65.593 kb on - strand, within BACOVA_02986at 65.594 kb on + strand, within BACOVA_02986at 65.594 kb on + strand, within BACOVA_02986at 65.595 kb on - strand, within BACOVA_02986at 65.595 kb on - strand, within BACOVA_02986at 65.601 kb on - strand, within BACOVA_02986at 65.602 kb on + strand, within BACOVA_02986at 65.602 kb on + strand, within BACOVA_02986at 65.603 kb on - strand, within BACOVA_02986at 65.658 kb on - strand, within BACOVA_02986at 65.835 kb on + strand, within BACOVA_02986at 65.836 kb on - strand, within BACOVA_02986at 65.846 kb on - strand, within BACOVA_02986at 65.879 kb on + strand, within BACOVA_02986at 65.880 kb on - strand, within BACOVA_02986at 65.880 kb on - strand, within BACOVA_02986at 65.923 kb on + strand, within BACOVA_02986at 65.923 kb on + strand, within BACOVA_02986at 65.925 kb on + strand, within BACOVA_02986at 65.925 kb on + strand, within BACOVA_02986at 65.926 kb on - strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.928 kb on + strand, within BACOVA_02986at 65.933 kb on - strand, within BACOVA_02986at 65.933 kb on - strand, within BACOVA_02986at 65.937 kb on + strand, within BACOVA_02986at 65.938 kb on - strand, within BACOVA_02986at 65.994 kb on + strand, within BACOVA_02986at 66.017 kb on + strand, within BACOVA_02986at 66.022 kb on + strand, within BACOVA_02986at 66.022 kb on + strand, within BACOVA_02986at 66.023 kb on - strand, within BACOVA_02986at 66.023 kb on - strand, within BACOVA_02986at 66.025 kb on + strand, within BACOVA_02986at 66.059 kb on + strand, within BACOVA_02986at 66.071 kb on + strand, within BACOVA_02986at 66.071 kb on + strand, within BACOVA_02986at 66.075 kb on - strand, within BACOVA_02986at 66.115 kb on - strand, within BACOVA_02986at 66.126 kb on - strand, within BACOVA_02986at 66.171 kb on + strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.172 kb on - strand, within BACOVA_02986at 66.179 kb on - strand, within BACOVA_02986at 66.200 kb on + strand, within BACOVA_02986at 66.214 kb on - strand, within BACOVA_02986at 66.216 kb on - strand, within BACOVA_02986at 66.219 kb on - strand, within BACOVA_02986at 66.224 kb on + strand, within BACOVA_02986at 66.224 kb on + strand, within BACOVA_02986at 66.225 kb on - strand, within BACOVA_02986at 66.234 kb on + strand, within BACOVA_02986at 66.327 kb on + strand, within BACOVA_02986

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C)
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64,211 + BACOVA_02984 0.35 -0.7
64,212 - BACOVA_02984 0.35 -0.0
64,212 - BACOVA_02984 0.35 -0.3
64,261 + BACOVA_02984 0.39 +1.4
64,267 + BACOVA_02984 0.39 -0.0
64,267 + BACOVA_02984 0.39 +1.0
64,268 - BACOVA_02984 0.39 +0.5
64,268 - BACOVA_02984 0.39 +0.4
64,275 - BACOVA_02984 0.40 -1.7
64,275 - BACOVA_02984 0.40 +0.5
64,357 + BACOVA_02984 0.46 +0.0
64,358 - BACOVA_02984 0.46 +0.5
64,358 - BACOVA_02984 0.46 +0.9
64,363 + BACOVA_02984 0.46 -0.4
64,382 + BACOVA_02984 0.48 -0.0
64,396 + BACOVA_02984 0.49 -0.2
64,499 + BACOVA_02984 0.57 -2.0
64,502 + BACOVA_02984 0.57 +0.3
64,503 - BACOVA_02984 0.57 +1.7
64,503 - BACOVA_02984 0.57 +0.8
64,503 - BACOVA_02984 0.57 -0.8
64,514 + BACOVA_02984 0.58 -0.2
64,541 + BACOVA_02984 0.60 -1.2
64,562 + BACOVA_02984 0.62 +1.3
64,562 + BACOVA_02984 0.62 -0.3
64,563 - BACOVA_02984 0.62 -2.0
64,563 - BACOVA_02984 0.62 +0.2
64,567 + BACOVA_02984 0.62 +0.1
64,567 + BACOVA_02984 0.62 +0.1
64,568 - BACOVA_02984 0.62 -2.0
64,568 - BACOVA_02984 0.62 +0.2
64,589 - BACOVA_02984 0.64 +0.7
64,603 + BACOVA_02984 0.65 -0.4
64,625 + BACOVA_02984 0.66 +0.8
64,657 + BACOVA_02984 0.69 +0.2
64,664 - BACOVA_02984 0.69 +0.0
64,664 - BACOVA_02984 0.69 +0.2
64,714 + BACOVA_02984 0.73 -0.9
64,715 - BACOVA_02984 0.73 -2.2
64,724 - BACOVA_02984 0.74 +0.1
64,724 - BACOVA_02984 0.74 -0.8
64,731 - BACOVA_02984 0.75 -1.2
64,731 - BACOVA_02984 0.75 -0.4
64,731 - BACOVA_02984 0.75 +0.7
64,733 + BACOVA_02984 0.75 -0.7
64,733 + BACOVA_02984 0.75 +0.2
64,808 + BACOVA_02984 0.80 +0.6
64,824 + BACOVA_02984 0.82 -0.7
64,834 + BACOVA_02984 0.82 +0.2
64,925 + BACOVA_02984 0.89 +0.4
64,925 + BACOVA_02984 0.89 -0.7
64,937 + +0.4
64,937 + -1.0
64,959 - -0.2
64,973 - +0.6
64,983 - +0.5
64,983 - -0.3
65,006 - +0.7
65,006 - +1.0
65,020 - -0.3
65,040 - +0.2
65,050 + -2.0
65,116 + -0.7
65,123 - -0.3
65,172 + -0.5
65,187 + BACOVA_02985 0.11 +0.1
65,293 + BACOVA_02985 0.67 -0.3
65,294 - BACOVA_02985 0.67 +0.7
65,294 - BACOVA_02985 0.67 -0.3
65,296 - BACOVA_02985 0.68 -1.2
65,402 + -1.0
65,403 - +0.1
65,403 - +0.7
65,405 + -0.5
65,409 + +1.1
65,410 - +1.4
65,421 + -0.4
65,447 - +0.5
65,447 - +0.4
65,450 + -0.5
65,451 - +0.1
65,452 + +0.9
65,478 - +0.6
65,478 - -1.0
65,491 - +0.8
65,494 + -1.2
65,494 + +0.4
65,494 + -1.4
65,494 + -1.9
65,494 + +1.0
65,495 - -0.3
65,496 + +1.2
65,496 + +0.5
65,496 + +0.8
65,497 - -1.2
65,497 - -1.5
65,501 + -2.9
65,543 + -0.9
65,590 + BACOVA_02986 0.11 -0.2
65,592 + BACOVA_02986 0.11 -1.0
65,592 + BACOVA_02986 0.11 -1.2
65,593 - BACOVA_02986 0.11 +0.0
65,593 - BACOVA_02986 0.11 +0.2
65,593 - BACOVA_02986 0.11 +1.4
65,594 + BACOVA_02986 0.11 -0.4
65,594 + BACOVA_02986 0.11 -0.7
65,595 - BACOVA_02986 0.11 -0.1
65,595 - BACOVA_02986 0.11 -0.2
65,601 - BACOVA_02986 0.12 +0.1
65,602 + BACOVA_02986 0.12 +0.8
65,602 + BACOVA_02986 0.12 +1.6
65,603 - BACOVA_02986 0.12 +1.4
65,658 - BACOVA_02986 0.16 -0.8
65,835 + BACOVA_02986 0.31 +1.0
65,836 - BACOVA_02986 0.31 +1.2
65,846 - BACOVA_02986 0.32 -2.0
65,879 + BACOVA_02986 0.35 -0.7
65,880 - BACOVA_02986 0.35 -1.0
65,880 - BACOVA_02986 0.35 -0.0
65,923 + BACOVA_02986 0.38 +0.2
65,923 + BACOVA_02986 0.38 -0.1
65,925 + BACOVA_02986 0.38 -1.7
65,925 + BACOVA_02986 0.38 -0.5
65,926 - BACOVA_02986 0.38 -0.6
65,928 + BACOVA_02986 0.39 -1.9
65,928 + BACOVA_02986 0.39 +1.1
65,928 + BACOVA_02986 0.39 +0.7
65,933 - BACOVA_02986 0.39 -0.7
65,933 - BACOVA_02986 0.39 +0.7
65,937 + BACOVA_02986 0.39 +0.4
65,938 - BACOVA_02986 0.39 +1.0
65,994 + BACOVA_02986 0.44 +0.1
66,017 + BACOVA_02986 0.46 +0.6
66,022 + BACOVA_02986 0.46 +1.1
66,022 + BACOVA_02986 0.46 -0.1
66,023 - BACOVA_02986 0.46 +0.5
66,023 - BACOVA_02986 0.46 +0.3
66,025 + BACOVA_02986 0.47 +1.1
66,059 + BACOVA_02986 0.49 +0.6
66,071 + BACOVA_02986 0.50 -0.4
66,071 + BACOVA_02986 0.50 +0.8
66,075 - BACOVA_02986 0.51 -0.7
66,115 - BACOVA_02986 0.54 -1.4
66,126 - BACOVA_02986 0.55 +0.7
66,171 + BACOVA_02986 0.59 +1.0
66,172 - BACOVA_02986 0.59 +0.5
66,172 - BACOVA_02986 0.59 +0.7
66,172 - BACOVA_02986 0.59 +1.1
66,179 - BACOVA_02986 0.59 +0.4
66,200 + BACOVA_02986 0.61 +0.6
66,214 - BACOVA_02986 0.62 +1.0
66,216 - BACOVA_02986 0.62 +0.1
66,219 - BACOVA_02986 0.62 +0.3
66,224 + BACOVA_02986 0.63 +0.8
66,224 + BACOVA_02986 0.63 -0.0
66,225 - BACOVA_02986 0.63 +0.0
66,234 + BACOVA_02986 0.64 +0.5
66,327 + BACOVA_02986 0.71 -1.6

Or see this region's nucleotide sequence