Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02809

Experiment: Tara gum 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02807 and BACOVA_02808 are separated by 12 nucleotidesBACOVA_02808 and BACOVA_02809 are separated by 21 nucleotidesBACOVA_02809 and BACOVA_02810 overlap by 10 nucleotidesBACOVA_02810 and BACOVA_02811 are separated by 6 nucleotides BACOVA_02807: BACOVA_02807 - hypothetical protein, at 274,229 to 275,854 _02807 BACOVA_02808: BACOVA_02808 - hypothetical protein, at 275,867 to 276,277 _02808 BACOVA_02809: BACOVA_02809 - hypothetical protein, at 276,299 to 277,957 _02809 BACOVA_02810: BACOVA_02810 - hypothetical protein, at 277,948 to 278,064 _02810 BACOVA_02811: BACOVA_02811 - arylsulfatase, at 278,071 to 279,597 _02811 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 275.305 kb on + strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.306 kb on - strand, within BACOVA_02807at 275.360 kb on - strand, within BACOVA_02807at 275.488 kb on + strand, within BACOVA_02807at 275.546 kb on - strand, within BACOVA_02807at 275.592 kb on + strand, within BACOVA_02807at 275.671 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.677 kb on + strand, within BACOVA_02807at 275.678 kb on - strand, within BACOVA_02807at 275.685 kb on + strand, within BACOVA_02807at 275.727 kb on + strandat 275.740 kb on + strandat 275.740 kb on + strandat 275.744 kb on - strandat 275.756 kb on - strandat 275.831 kb on + strandat 275.836 kb on + strandat 275.837 kb on - strandat 275.858 kb on - strandat 275.858 kb on - strandat 275.868 kb on + strandat 275.888 kb on + strandat 275.892 kb on - strandat 275.892 kb on - strandat 275.893 kb on + strandat 275.936 kb on - strand, within BACOVA_02808at 275.943 kb on - strand, within BACOVA_02808at 276.094 kb on + strand, within BACOVA_02808at 276.100 kb on + strand, within BACOVA_02808at 276.155 kb on - strand, within BACOVA_02808at 276.157 kb on - strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.172 kb on + strand, within BACOVA_02808at 276.173 kb on - strand, within BACOVA_02808at 276.183 kb on - strand, within BACOVA_02808at 276.213 kb on + strand, within BACOVA_02808at 276.260 kb on + strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.261 kb on - strandat 276.264 kb on + strandat 276.265 kb on - strandat 276.265 kb on - strandat 276.266 kb on + strandat 276.267 kb on - strandat 276.269 kb on + strandat 276.296 kb on + strandat 276.301 kb on - strandat 276.307 kb on + strandat 276.308 kb on - strandat 276.345 kb on + strandat 276.365 kb on + strandat 276.385 kb on + strandat 276.385 kb on + strandat 276.392 kb on + strandat 276.394 kb on + strandat 276.395 kb on - strandat 276.420 kb on - strandat 276.420 kb on - strandat 276.425 kb on - strandat 276.427 kb on - strandat 276.469 kb on + strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.470 kb on - strand, within BACOVA_02809at 276.530 kb on - strand, within BACOVA_02809at 276.575 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on + strand, within BACOVA_02809at 276.582 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.583 kb on - strand, within BACOVA_02809at 276.616 kb on + strand, within BACOVA_02809at 276.617 kb on - strand, within BACOVA_02809at 276.674 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.683 kb on + strand, within BACOVA_02809at 276.684 kb on + strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.684 kb on - strand, within BACOVA_02809at 276.686 kb on - strand, within BACOVA_02809at 276.694 kb on + strand, within BACOVA_02809at 276.789 kb on + strand, within BACOVA_02809at 276.792 kb on - strand, within BACOVA_02809at 276.810 kb on + strand, within BACOVA_02809at 276.811 kb on - strand, within BACOVA_02809at 276.833 kb on + strand, within BACOVA_02809at 276.838 kb on - strand, within BACOVA_02809at 276.888 kb on + strand, within BACOVA_02809at 276.920 kb on - strand, within BACOVA_02809at 276.940 kb on - strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.943 kb on + strand, within BACOVA_02809at 276.944 kb on - strand, within BACOVA_02809at 276.944 kb on - strand, within BACOVA_02809at 276.948 kb on + strand, within BACOVA_02809at 276.948 kb on + strand, within BACOVA_02809at 276.959 kb on + strand, within BACOVA_02809at 276.976 kb on + strand, within BACOVA_02809at 277.075 kb on + strand, within BACOVA_02809at 277.166 kb on + strand, within BACOVA_02809at 277.167 kb on - strand, within BACOVA_02809at 277.167 kb on - strand, within BACOVA_02809at 277.202 kb on + strand, within BACOVA_02809at 277.209 kb on + strand, within BACOVA_02809at 277.210 kb on - strand, within BACOVA_02809at 277.226 kb on - strand, within BACOVA_02809at 277.271 kb on + strand, within BACOVA_02809at 277.283 kb on + strand, within BACOVA_02809at 277.284 kb on - strand, within BACOVA_02809at 277.284 kb on - strand, within BACOVA_02809at 277.292 kb on - strand, within BACOVA_02809at 277.301 kb on - strand, within BACOVA_02809at 277.375 kb on - strand, within BACOVA_02809at 277.523 kb on + strand, within BACOVA_02809at 277.563 kb on - strand, within BACOVA_02809at 277.581 kb on - strand, within BACOVA_02809at 277.584 kb on + strand, within BACOVA_02809at 277.627 kb on - strand, within BACOVA_02809at 277.629 kb on - strand, within BACOVA_02809at 277.640 kb on + strand, within BACOVA_02809at 277.657 kb on + strand, within BACOVA_02809at 277.714 kb on + strand, within BACOVA_02809at 277.714 kb on + strand, within BACOVA_02809at 277.715 kb on - strand, within BACOVA_02809at 277.715 kb on - strand, within BACOVA_02809at 277.859 kb on - strandat 277.870 kb on - strandat 277.870 kb on - strandat 277.910 kb on + strandat 277.923 kb on - strandat 277.953 kb on + strandat 277.953 kb on + strandat 277.957 kb on + strandat 277.957 kb on + strandat 277.957 kb on + strandat 277.957 kb on + strandat 277.958 kb on - strandat 278.005 kb on + strand, within BACOVA_02810at 278.035 kb on - strand, within BACOVA_02810at 278.047 kb on + strand, within BACOVA_02810at 278.048 kb on - strand, within BACOVA_02810at 278.077 kb on + strandat 278.106 kb on - strandat 278.209 kb on - strandat 278.220 kb on - strandat 278.271 kb on + strand, within BACOVA_02811at 278.272 kb on - strand, within BACOVA_02811at 278.273 kb on + strand, within BACOVA_02811at 278.274 kb on - strand, within BACOVA_02811at 278.274 kb on - strand, within BACOVA_02811at 278.286 kb on + strand, within BACOVA_02811at 278.286 kb on + strand, within BACOVA_02811at 278.307 kb on - strand, within BACOVA_02811at 278.336 kb on - strand, within BACOVA_02811at 278.381 kb on + strand, within BACOVA_02811at 278.419 kb on + strand, within BACOVA_02811at 278.420 kb on - strand, within BACOVA_02811at 278.450 kb on - strand, within BACOVA_02811at 278.518 kb on - strand, within BACOVA_02811at 278.518 kb on - strand, within BACOVA_02811at 278.541 kb on + strand, within BACOVA_02811at 278.542 kb on - strand, within BACOVA_02811at 278.542 kb on - strand, within BACOVA_02811at 278.543 kb on + strand, within BACOVA_02811at 278.543 kb on + strand, within BACOVA_02811at 278.544 kb on - strand, within BACOVA_02811at 278.609 kb on + strand, within BACOVA_02811at 278.650 kb on - strand, within BACOVA_02811at 278.813 kb on + strand, within BACOVA_02811at 278.862 kb on + strand, within BACOVA_02811at 278.867 kb on - strand, within BACOVA_02811at 278.873 kb on + strand, within BACOVA_02811at 278.922 kb on + strand, within BACOVA_02811at 278.922 kb on + strand, within BACOVA_02811at 278.922 kb on + strand, within BACOVA_02811at 278.922 kb on + strand, within BACOVA_02811at 278.923 kb on - strand, within BACOVA_02811at 278.925 kb on - strand, within BACOVA_02811at 278.950 kb on + strand, within BACOVA_02811at 278.950 kb on + strand, within BACOVA_02811at 278.951 kb on - strand, within BACOVA_02811

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C)
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275,305 + BACOVA_02807 0.66 -0.3
275,306 - BACOVA_02807 0.66 -0.4
275,306 - BACOVA_02807 0.66 -0.4
275,360 - BACOVA_02807 0.70 -0.6
275,488 + BACOVA_02807 0.77 -0.4
275,546 - BACOVA_02807 0.81 -0.2
275,592 + BACOVA_02807 0.84 -0.9
275,671 + BACOVA_02807 0.89 -0.6
275,677 + BACOVA_02807 0.89 +0.1
275,677 + BACOVA_02807 0.89 +0.2
275,678 - BACOVA_02807 0.89 +0.6
275,685 + BACOVA_02807 0.90 +0.7
275,727 + +0.2
275,740 + -0.1
275,740 + +0.5
275,744 - -0.5
275,756 - -0.4
275,831 + -0.8
275,836 + -0.8
275,837 - +0.1
275,858 - +0.9
275,858 - +0.2
275,868 + -0.8
275,888 + +2.0
275,892 - -0.8
275,892 - +1.0
275,893 + +0.6
275,936 - BACOVA_02808 0.17 -0.5
275,943 - BACOVA_02808 0.18 +1.3
276,094 + BACOVA_02808 0.55 +0.1
276,100 + BACOVA_02808 0.57 -1.1
276,155 - BACOVA_02808 0.70 -1.0
276,157 - BACOVA_02808 0.71 -1.3
276,172 + BACOVA_02808 0.74 +0.7
276,172 + BACOVA_02808 0.74 +0.7
276,173 - BACOVA_02808 0.74 +0.7
276,183 - BACOVA_02808 0.77 -2.7
276,213 + BACOVA_02808 0.84 -0.4
276,260 + -0.1
276,261 - +0.3
276,261 - -0.6
276,261 - +1.6
276,264 + +0.4
276,265 - -1.9
276,265 - +1.5
276,266 + +0.1
276,267 - +0.5
276,269 + -0.0
276,296 + +0.2
276,301 - -2.0
276,307 + -0.3
276,308 - -0.5
276,345 + +0.2
276,365 + +1.4
276,385 + -0.1
276,385 + -0.6
276,392 + +0.3
276,394 + +1.0
276,395 - -1.0
276,420 - -0.7
276,420 - -0.4
276,425 - -0.9
276,427 - -0.4
276,469 + BACOVA_02809 0.10 +1.1
276,470 - BACOVA_02809 0.10 +0.5
276,470 - BACOVA_02809 0.10 -1.7
276,530 - BACOVA_02809 0.14 +1.0
276,575 + BACOVA_02809 0.17 +0.1
276,582 + BACOVA_02809 0.17 +0.6
276,582 + BACOVA_02809 0.17 +0.6
276,582 + BACOVA_02809 0.17 -0.0
276,582 - BACOVA_02809 0.17 -0.8
276,583 - BACOVA_02809 0.17 +0.3
276,583 - BACOVA_02809 0.17 +0.3
276,583 - BACOVA_02809 0.17 -0.2
276,583 - BACOVA_02809 0.17 -0.3
276,583 - BACOVA_02809 0.17 -0.4
276,583 - BACOVA_02809 0.17 -1.0
276,616 + BACOVA_02809 0.19 -0.8
276,617 - BACOVA_02809 0.19 +0.6
276,674 + BACOVA_02809 0.23 +1.0
276,683 + BACOVA_02809 0.23 -0.1
276,683 + BACOVA_02809 0.23 +0.0
276,684 + BACOVA_02809 0.23 -0.2
276,684 - BACOVA_02809 0.23 +0.2
276,684 - BACOVA_02809 0.23 +1.0
276,686 - BACOVA_02809 0.23 +0.3
276,694 + BACOVA_02809 0.24 +0.6
276,789 + BACOVA_02809 0.30 +0.3
276,792 - BACOVA_02809 0.30 -0.6
276,810 + BACOVA_02809 0.31 +0.8
276,811 - BACOVA_02809 0.31 +0.3
276,833 + BACOVA_02809 0.32 -0.9
276,838 - BACOVA_02809 0.32 -0.2
276,888 + BACOVA_02809 0.36 -0.5
276,920 - BACOVA_02809 0.37 +1.4
276,940 - BACOVA_02809 0.39 -0.5
276,943 + BACOVA_02809 0.39 +0.4
276,943 + BACOVA_02809 0.39 -1.3
276,943 + BACOVA_02809 0.39 +0.4
276,944 - BACOVA_02809 0.39 -0.6
276,944 - BACOVA_02809 0.39 -0.6
276,948 + BACOVA_02809 0.39 +0.7
276,948 + BACOVA_02809 0.39 +0.3
276,959 + BACOVA_02809 0.40 -0.1
276,976 + BACOVA_02809 0.41 -0.4
277,075 + BACOVA_02809 0.47 +1.6
277,166 + BACOVA_02809 0.52 +1.2
277,167 - BACOVA_02809 0.52 -0.8
277,167 - BACOVA_02809 0.52 -1.1
277,202 + BACOVA_02809 0.54 +0.1
277,209 + BACOVA_02809 0.55 +0.6
277,210 - BACOVA_02809 0.55 -1.7
277,226 - BACOVA_02809 0.56 +0.7
277,271 + BACOVA_02809 0.59 +0.4
277,283 + BACOVA_02809 0.59 -0.3
277,284 - BACOVA_02809 0.59 -0.8
277,284 - BACOVA_02809 0.59 -0.4
277,292 - BACOVA_02809 0.60 -1.1
277,301 - BACOVA_02809 0.60 -0.2
277,375 - BACOVA_02809 0.65 +0.1
277,523 + BACOVA_02809 0.74 -0.5
277,563 - BACOVA_02809 0.76 -1.6
277,581 - BACOVA_02809 0.77 -1.4
277,584 + BACOVA_02809 0.77 -1.1
277,627 - BACOVA_02809 0.80 +0.1
277,629 - BACOVA_02809 0.80 -0.3
277,640 + BACOVA_02809 0.81 -0.4
277,657 + BACOVA_02809 0.82 -0.2
277,714 + BACOVA_02809 0.85 -0.4
277,714 + BACOVA_02809 0.85 -1.7
277,715 - BACOVA_02809 0.85 -0.0
277,715 - BACOVA_02809 0.85 +0.3
277,859 - -0.0
277,870 - -0.7
277,870 - +0.8
277,910 + +1.6
277,923 - -0.9
277,953 + -0.0
277,953 + -0.0
277,957 + +0.2
277,957 + +0.6
277,957 + -0.7
277,957 + -0.2
277,958 - +0.0
278,005 + BACOVA_02810 0.49 +0.8
278,035 - BACOVA_02810 0.74 -0.6
278,047 + BACOVA_02810 0.85 +1.0
278,048 - BACOVA_02810 0.85 +1.4
278,077 + -0.3
278,106 - -1.1
278,209 - -0.9
278,220 - -0.7
278,271 + BACOVA_02811 0.13 +0.2
278,272 - BACOVA_02811 0.13 +0.4
278,273 + BACOVA_02811 0.13 +0.7
278,274 - BACOVA_02811 0.13 +0.3
278,274 - BACOVA_02811 0.13 -0.9
278,286 + BACOVA_02811 0.14 -0.7
278,286 + BACOVA_02811 0.14 -0.9
278,307 - BACOVA_02811 0.15 -0.0
278,336 - BACOVA_02811 0.17 -0.6
278,381 + BACOVA_02811 0.20 -0.8
278,419 + BACOVA_02811 0.23 -0.2
278,420 - BACOVA_02811 0.23 +0.2
278,450 - BACOVA_02811 0.25 +1.2
278,518 - BACOVA_02811 0.29 -1.4
278,518 - BACOVA_02811 0.29 +1.5
278,541 + BACOVA_02811 0.31 -1.4
278,542 - BACOVA_02811 0.31 +0.2
278,542 - BACOVA_02811 0.31 +0.2
278,543 + BACOVA_02811 0.31 +0.6
278,543 + BACOVA_02811 0.31 +1.0
278,544 - BACOVA_02811 0.31 -1.1
278,609 + BACOVA_02811 0.35 -0.6
278,650 - BACOVA_02811 0.38 +0.6
278,813 + BACOVA_02811 0.49 -0.5
278,862 + BACOVA_02811 0.52 -0.7
278,867 - BACOVA_02811 0.52 -0.2
278,873 + BACOVA_02811 0.53 -0.6
278,922 + BACOVA_02811 0.56 -0.5
278,922 + BACOVA_02811 0.56 -0.5
278,922 + BACOVA_02811 0.56 +0.2
278,922 + BACOVA_02811 0.56 +0.3
278,923 - BACOVA_02811 0.56 +0.0
278,925 - BACOVA_02811 0.56 +0.5
278,950 + BACOVA_02811 0.58 -0.4
278,950 + BACOVA_02811 0.58 +0.1
278,951 - BACOVA_02811 0.58 -0.2

Or see this region's nucleotide sequence