Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01916

Experiment: Tara gum 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01914 and BACOVA_01915 are separated by 256 nucleotidesBACOVA_01915 and BACOVA_01916 are separated by 115 nucleotidesBACOVA_01916 and BACOVA_01917 are separated by 140 nucleotidesBACOVA_01917 and BACOVA_01918 overlap by 37 nucleotides BACOVA_01914: BACOVA_01914 - Sel1 repeat protein, at 122,323 to 124,821 _01914 BACOVA_01915: BACOVA_01915 - shikimate kinase, at 125,078 to 125,605 _01915 BACOVA_01916: BACOVA_01916 - hypothetical protein, at 125,721 to 126,323 _01916 BACOVA_01917: BACOVA_01917 - hypothetical protein, at 126,464 to 127,099 _01917 BACOVA_01918: BACOVA_01918 - putative dolichyl-phosphate-mannose-protein mannosyltransferase, at 127,063 to 128,901 _01918 Position (kb) 125 126 127Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 124.734 kb on + strandat 124.734 kb on + strandat 124.734 kb on + strandat 124.734 kb on + strandat 124.735 kb on - strandat 124.737 kb on - strandat 124.789 kb on + strandat 124.790 kb on - strandat 124.824 kb on + strandat 124.827 kb on - strandat 124.834 kb on + strandat 124.835 kb on - strandat 124.835 kb on - strandat 124.850 kb on + strandat 124.853 kb on + strandat 124.860 kb on + strandat 124.886 kb on + strandat 124.955 kb on - strandat 124.955 kb on - strandat 124.955 kb on - strandat 124.980 kb on + strandat 125.020 kb on + strandat 125.021 kb on - strandat 125.062 kb on - strandat 125.063 kb on + strandat 125.073 kb on + strandat 125.073 kb on + strandat 125.079 kb on + strandat 125.080 kb on - strandat 125.080 kb on - strandat 125.158 kb on + strand, within BACOVA_01915at 125.236 kb on + strand, within BACOVA_01915at 125.248 kb on + strand, within BACOVA_01915at 125.292 kb on + strand, within BACOVA_01915at 125.348 kb on - strand, within BACOVA_01915at 125.501 kb on - strand, within BACOVA_01915at 125.596 kb on + strandat 125.597 kb on - strandat 125.605 kb on + strandat 125.640 kb on - strandat 125.664 kb on - strandat 125.680 kb on + strandat 125.681 kb on - strandat 125.681 kb on - strandat 125.870 kb on + strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.871 kb on - strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.872 kb on + strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.873 kb on - strand, within BACOVA_01916at 125.898 kb on + strand, within BACOVA_01916at 125.922 kb on - strand, within BACOVA_01916at 125.925 kb on + strand, within BACOVA_01916at 125.926 kb on - strand, within BACOVA_01916at 126.066 kb on + strand, within BACOVA_01916at 126.066 kb on + strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.067 kb on - strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.162 kb on + strand, within BACOVA_01916at 126.179 kb on + strand, within BACOVA_01916at 126.254 kb on + strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.255 kb on - strand, within BACOVA_01916at 126.281 kb on - strandat 126.308 kb on + strandat 126.323 kb on + strandat 126.339 kb on - strandat 126.343 kb on + strandat 126.344 kb on - strandat 126.344 kb on - strandat 126.408 kb on + strandat 127.124 kb on + strandat 127.166 kb on + strandat 127.169 kb on + strandat 127.169 kb on + strandat 127.185 kb on + strandat 127.185 kb on + strandat 127.186 kb on - strandat 127.188 kb on + strandat 127.189 kb on - strandat 127.216 kb on + strandat 127.216 kb on + strandat 127.246 kb on - strandat 127.315 kb on + strand, within BACOVA_01918

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Per-strain Table

Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C)
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124,734 + -0.7
124,734 + -1.1
124,734 + -1.0
124,734 + -1.0
124,735 - +0.7
124,737 - -1.1
124,789 + -0.9
124,790 - -0.2
124,824 + -1.0
124,827 - +0.8
124,834 + +1.3
124,835 - -0.8
124,835 - +1.0
124,850 + -0.3
124,853 + -0.1
124,860 + +1.4
124,886 + +0.9
124,955 - -0.2
124,955 - -0.5
124,955 - -0.1
124,980 + +0.4
125,020 + -1.1
125,021 - -1.8
125,062 - +0.4
125,063 + +0.3
125,073 + +1.0
125,073 + +0.7
125,079 + +1.0
125,080 - -0.5
125,080 - -1.3
125,158 + BACOVA_01915 0.15 -1.2
125,236 + BACOVA_01915 0.30 -2.4
125,248 + BACOVA_01915 0.32 -1.9
125,292 + BACOVA_01915 0.41 -2.2
125,348 - BACOVA_01915 0.51 -1.4
125,501 - BACOVA_01915 0.80 -1.0
125,596 + -0.8
125,597 - -0.8
125,605 + -2.0
125,640 - -1.3
125,664 - -1.9
125,680 + +0.5
125,681 - -0.8
125,681 - +0.1
125,870 + BACOVA_01916 0.25 +0.2
125,871 - BACOVA_01916 0.25 -0.4
125,871 - BACOVA_01916 0.25 +0.8
125,871 - BACOVA_01916 0.25 +0.3
125,872 + BACOVA_01916 0.25 -0.4
125,872 + BACOVA_01916 0.25 +0.3
125,872 + BACOVA_01916 0.25 -0.1
125,873 - BACOVA_01916 0.25 -0.3
125,873 - BACOVA_01916 0.25 +1.1
125,873 - BACOVA_01916 0.25 +0.1
125,898 + BACOVA_01916 0.29 -0.6
125,922 - BACOVA_01916 0.33 +0.6
125,925 + BACOVA_01916 0.34 +0.4
125,926 - BACOVA_01916 0.34 +0.1
126,066 + BACOVA_01916 0.57 -0.3
126,066 + BACOVA_01916 0.57 +0.4
126,067 - BACOVA_01916 0.57 -1.0
126,067 - BACOVA_01916 0.57 -1.8
126,162 + BACOVA_01916 0.73 -0.2
126,162 + BACOVA_01916 0.73 +0.1
126,179 + BACOVA_01916 0.76 -0.4
126,254 + BACOVA_01916 0.88 +0.6
126,255 - BACOVA_01916 0.89 -0.3
126,255 - BACOVA_01916 0.89 -0.3
126,281 - +0.0
126,308 + -1.8
126,323 + +0.2
126,339 - +0.7
126,343 + -2.1
126,344 - -1.5
126,344 - -0.4
126,408 + -0.9
127,124 + +0.2
127,166 + -0.2
127,169 + -2.2
127,169 + -0.5
127,185 + -1.9
127,185 + -4.0
127,186 - -2.9
127,188 + -3.6
127,189 - -2.1
127,216 + -2.5
127,216 + -3.6
127,246 - -3.5
127,315 + BACOVA_01918 0.14 -3.3

Or see this region's nucleotide sequence