Experiment: Tara gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01553 and BACOVA_01554 are separated by 452 nucleotides BACOVA_01554 and BACOVA_01555 are separated by 316 nucleotides
BACOVA_01553: BACOVA_01553 - site-specific recombinase, phage integrase family, at 52,732 to 54,063
_01553
BACOVA_01554: BACOVA_01554 - hypothetical protein, at 54,516 to 55,001
_01554
BACOVA_01555: BACOVA_01555 - DNA (cytosine-5-)-methyltransferase, at 55,318 to 56,571
_01555
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.601 kb on + strand, within BACOVA_01553 at 53.602 kb on - strand, within BACOVA_01553 at 53.603 kb on + strand, within BACOVA_01553 at 53.611 kb on + strand, within BACOVA_01553 at 53.615 kb on + strand, within BACOVA_01553 at 53.616 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.671 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.794 kb on - strand, within BACOVA_01553 at 53.845 kb on - strand, within BACOVA_01553 at 53.846 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.887 kb on + strand, within BACOVA_01553 at 53.894 kb on + strand, within BACOVA_01553 at 53.895 kb on - strand, within BACOVA_01553 at 53.931 kb on + strand at 53.931 kb on + strand at 53.932 kb on - strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.952 kb on + strand at 53.953 kb on - strand at 53.953 kb on - strand at 53.997 kb on + strand at 54.001 kb on + strand at 54.076 kb on + strand at 54.087 kb on + strand at 54.087 kb on + strand at 54.088 kb on - strand at 54.143 kb on + strand at 54.153 kb on + strand at 54.167 kb on - strand at 54.167 kb on - strand at 54.213 kb on + strand at 54.285 kb on - strand at 54.522 kb on - strand at 54.547 kb on - strand at 54.547 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.559 kb on - strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.560 kb on + strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.561 kb on - strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.564 kb on + strand at 54.565 kb on - strand, within BACOVA_01554 at 54.565 kb on - strand, within BACOVA_01554 at 54.660 kb on + strand, within BACOVA_01554 at 54.725 kb on + strand, within BACOVA_01554 at 54.780 kb on + strand, within BACOVA_01554 at 54.781 kb on - strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.888 kb on + strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.889 kb on - strand, within BACOVA_01554 at 54.891 kb on - strand, within BACOVA_01554 at 54.893 kb on - strand, within BACOVA_01554 at 54.917 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 54.922 kb on - strand, within BACOVA_01554 at 55.004 kb on - strand at 55.010 kb on + strand at 55.011 kb on - strand at 55.011 kb on - strand at 55.016 kb on - strand at 55.019 kb on + strand at 55.022 kb on + strand at 55.023 kb on - strand at 55.048 kb on - strand at 55.112 kb on - strand at 55.114 kb on + strand at 55.119 kb on + strand at 55.127 kb on + strand at 55.134 kb on + strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.135 kb on - strand at 55.144 kb on + strand at 55.144 kb on + strand at 55.145 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.147 kb on - strand at 55.149 kb on + strand at 55.150 kb on - strand at 55.159 kb on + strand at 55.169 kb on + strand at 55.170 kb on - strand at 55.170 kb on - strand at 55.173 kb on - strand at 55.189 kb on + strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.208 kb on - strand at 55.210 kb on + strand at 55.279 kb on - strand at 55.283 kb on - strand at 55.284 kb on + strand at 55.285 kb on - strand at 55.287 kb on - strand at 55.330 kb on - strand at 55.380 kb on - strand at 55.390 kb on - strand at 55.390 kb on - strand at 55.456 kb on - strand, within BACOVA_01555 at 55.636 kb on - strand, within BACOVA_01555 at 55.651 kb on - strand, within BACOVA_01555 at 55.788 kb on - strand, within BACOVA_01555 at 55.893 kb on - strand, within BACOVA_01555 at 55.915 kb on - strand, within BACOVA_01555
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/mL (C) remove 53,601 + BACOVA_01553 0.65 +0.8 53,602 - BACOVA_01553 0.65 -0.9 53,603 + BACOVA_01553 0.65 +0.5 53,611 + BACOVA_01553 0.66 +0.3 53,615 + BACOVA_01553 0.66 -1.5 53,616 - BACOVA_01553 0.66 +0.6 53,671 - BACOVA_01553 0.70 +0.2 53,671 - BACOVA_01553 0.70 +2.7 53,794 - BACOVA_01553 0.80 +2.6 53,794 - BACOVA_01553 0.80 -0.3 53,845 - BACOVA_01553 0.84 -0.5 53,846 + BACOVA_01553 0.84 -0.4 53,887 + BACOVA_01553 0.87 +0.6 53,887 + BACOVA_01553 0.87 +0.0 53,894 + BACOVA_01553 0.87 +1.3 53,895 - BACOVA_01553 0.87 +0.3 53,931 + +0.6 53,931 + -0.3 53,932 - -0.9 53,952 + -0.6 53,952 + -0.8 53,952 + -1.0 53,953 - +1.3 53,953 - +0.3 53,997 + +0.4 54,001 + -1.2 54,076 + +0.1 54,087 + +0.2 54,087 + -0.0 54,088 - +0.3 54,143 + -0.6 54,153 + +1.2 54,167 - +1.4 54,167 - +0.0 54,213 + -0.9 54,285 - +0.3 54,522 - +0.5 54,547 - +0.8 54,547 - -0.4 54,559 - -2.0 54,559 - +1.4 54,559 - +0.1 54,560 + +0.0 54,560 + -0.5 54,560 + -0.6 54,560 + +1.0 54,560 + -0.5 54,560 + +0.5 54,561 - +1.2 54,561 - +0.0 54,561 - +1.1 54,564 + +0.6 54,564 + -1.9 54,564 + -0.3 54,565 - BACOVA_01554 0.10 +0.0 54,565 - BACOVA_01554 0.10 +0.3 54,660 + BACOVA_01554 0.30 -0.6 54,725 + BACOVA_01554 0.43 -0.8 54,780 + BACOVA_01554 0.54 -1.0 54,781 - BACOVA_01554 0.55 -0.2 54,888 + BACOVA_01554 0.77 -1.1 54,888 + BACOVA_01554 0.77 +0.0 54,888 + BACOVA_01554 0.77 -0.2 54,889 - BACOVA_01554 0.77 -0.0 54,889 - BACOVA_01554 0.77 +0.0 54,889 - BACOVA_01554 0.77 -0.1 54,889 - BACOVA_01554 0.77 +0.2 54,889 - BACOVA_01554 0.77 -1.5 54,891 - BACOVA_01554 0.77 +0.6 54,893 - BACOVA_01554 0.78 -0.0 54,917 - BACOVA_01554 0.83 -1.2 54,922 - BACOVA_01554 0.84 +1.3 54,922 - BACOVA_01554 0.84 -1.0 55,004 - +0.7 55,010 + -0.7 55,011 - -0.2 55,011 - -0.3 55,016 - -1.1 55,019 + -0.3 55,022 + +0.1 55,023 - +0.2 55,048 - +0.3 55,112 - +0.7 55,114 + +0.7 55,119 + -0.5 55,127 + +0.6 55,134 + +0.4 55,135 - +1.5 55,135 - +0.4 55,135 - -0.9 55,144 + -1.3 55,144 + +0.3 55,145 - -0.3 55,147 - +0.8 55,147 - -1.0 55,147 - +0.6 55,149 + -0.4 55,150 - -0.2 55,159 + +0.8 55,169 + +0.3 55,170 - +0.2 55,170 - -0.6 55,173 - +2.0 55,189 + +0.2 55,208 - +0.4 55,208 - -0.9 55,208 - -1.0 55,208 - -0.2 55,210 + +0.1 55,279 - -0.9 55,283 - +0.0 55,284 + -0.2 55,285 - -0.9 55,287 - +0.3 55,330 - -0.6 55,380 - -0.1 55,390 - +0.1 55,390 - +0.2 55,456 - BACOVA_01555 0.11 +0.7 55,636 - BACOVA_01555 0.25 -0.6 55,651 - BACOVA_01555 0.27 -0.2 55,788 - BACOVA_01555 0.37 +1.6 55,893 - BACOVA_01555 0.46 -0.1 55,915 - BACOVA_01555 0.48 -0.4
Or see this region's nucleotide sequence