Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02109

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02108 and MPMX26_02109 are separated by 286 nucleotidesMPMX26_02109 and MPMX26_02110 are separated by 271 nucleotidesMPMX26_02110 and MPMX26_02111 are separated by 158 nucleotides MPMX26_02108: MPMX26_02108 - Membrane-bound lytic murein transglycosylase B, at 2,162,145 to 2,163,146 _02108 MPMX26_02109: MPMX26_02109 - Endolytic peptidoglycan transglycosylase RlpA, at 2,163,433 to 2,164,044 _02109 MPMX26_02110: MPMX26_02110 - hypothetical protein, at 2,164,316 to 2,164,768 _02110 MPMX26_02111: MPMX26_02111 - Elongation factor Ts, at 2,164,927 to 2,165,802 _02111 Position (kb) 2163 2164 2165Strain fitness (log2 ratio) -3 -2 -1 0 1at 2162.478 kb on + strand, within MPMX26_02108at 2162.478 kb on + strand, within MPMX26_02108at 2162.486 kb on + strand, within MPMX26_02108at 2162.486 kb on + strand, within MPMX26_02108at 2162.495 kb on + strand, within MPMX26_02108at 2162.495 kb on + strand, within MPMX26_02108at 2162.531 kb on + strand, within MPMX26_02108at 2162.874 kb on + strand, within MPMX26_02108at 2162.889 kb on + strand, within MPMX26_02108at 2162.889 kb on + strand, within MPMX26_02108at 2162.899 kb on + strand, within MPMX26_02108at 2162.918 kb on + strand, within MPMX26_02108at 2162.918 kb on + strand, within MPMX26_02108at 2162.924 kb on + strand, within MPMX26_02108at 2162.924 kb on + strand, within MPMX26_02108at 2162.924 kb on + strand, within MPMX26_02108at 2162.930 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2162.966 kb on + strand, within MPMX26_02108at 2163.089 kb on + strandat 2163.368 kb on + strandat 2163.404 kb on + strandat 2163.409 kb on + strandat 2163.409 kb on + strandat 2163.409 kb on + strandat 2163.425 kb on + strandat 2163.467 kb on + strandat 2163.467 kb on + strandat 2163.477 kb on + strandat 2163.477 kb on + strandat 2163.505 kb on + strand, within MPMX26_02109at 2163.559 kb on + strand, within MPMX26_02109at 2163.569 kb on + strand, within MPMX26_02109at 2163.574 kb on + strand, within MPMX26_02109at 2163.580 kb on + strand, within MPMX26_02109at 2163.580 kb on + strand, within MPMX26_02109at 2163.596 kb on + strand, within MPMX26_02109at 2163.603 kb on + strand, within MPMX26_02109at 2163.611 kb on + strand, within MPMX26_02109at 2163.627 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.723 kb on + strand, within MPMX26_02109at 2163.733 kb on + strand, within MPMX26_02109at 2163.905 kb on + strand, within MPMX26_02109at 2163.946 kb on + strand, within MPMX26_02109at 2163.957 kb on + strand, within MPMX26_02109at 2163.970 kb on + strand, within MPMX26_02109at 2164.021 kb on + strandat 2164.030 kb on + strandat 2164.040 kb on + strandat 2164.057 kb on + strandat 2164.315 kb on + strandat 2164.436 kb on + strand, within MPMX26_02110at 2164.571 kb on + strand, within MPMX26_02110at 2164.571 kb on + strand, within MPMX26_02110at 2164.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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2,162,478 + MPMX26_02108 0.33 -0.1
2,162,478 + MPMX26_02108 0.33 +0.3
2,162,486 + MPMX26_02108 0.34 +0.5
2,162,486 + MPMX26_02108 0.34 +1.1
2,162,495 + MPMX26_02108 0.35 +0.6
2,162,495 + MPMX26_02108 0.35 -0.1
2,162,531 + MPMX26_02108 0.39 +0.5
2,162,874 + MPMX26_02108 0.73 +0.3
2,162,889 + MPMX26_02108 0.74 +0.3
2,162,889 + MPMX26_02108 0.74 +0.1
2,162,899 + MPMX26_02108 0.75 +0.4
2,162,918 + MPMX26_02108 0.77 +1.1
2,162,918 + MPMX26_02108 0.77 +0.4
2,162,924 + MPMX26_02108 0.78 -0.2
2,162,924 + MPMX26_02108 0.78 -0.1
2,162,924 + MPMX26_02108 0.78 -0.3
2,162,930 + MPMX26_02108 0.78 +1.2
2,162,966 + MPMX26_02108 0.82 -0.1
2,162,966 + MPMX26_02108 0.82 +1.2
2,162,966 + MPMX26_02108 0.82 +0.5
2,162,966 + MPMX26_02108 0.82 -0.0
2,162,966 + MPMX26_02108 0.82 -0.7
2,162,966 + MPMX26_02108 0.82 +0.3
2,163,089 + +0.8
2,163,368 + -0.2
2,163,404 + -0.5
2,163,409 + +0.8
2,163,409 + +0.3
2,163,409 + -0.1
2,163,425 + -0.9
2,163,467 + -2.5
2,163,467 + -1.1
2,163,477 + -2.1
2,163,477 + -2.6
2,163,505 + MPMX26_02109 0.12 +0.7
2,163,559 + MPMX26_02109 0.21 -0.7
2,163,569 + MPMX26_02109 0.22 -1.6
2,163,574 + MPMX26_02109 0.23 -3.2
2,163,580 + MPMX26_02109 0.24 -1.6
2,163,580 + MPMX26_02109 0.24 -0.8
2,163,596 + MPMX26_02109 0.27 -2.2
2,163,603 + MPMX26_02109 0.28 -2.2
2,163,611 + MPMX26_02109 0.29 -0.9
2,163,627 + MPMX26_02109 0.32 -2.6
2,163,723 + MPMX26_02109 0.47 -0.0
2,163,723 + MPMX26_02109 0.47 -0.5
2,163,723 + MPMX26_02109 0.47 -0.3
2,163,723 + MPMX26_02109 0.47 -0.2
2,163,723 + MPMX26_02109 0.47 -1.5
2,163,723 + MPMX26_02109 0.47 -0.9
2,163,723 + MPMX26_02109 0.47 -1.1
2,163,723 + MPMX26_02109 0.47 +0.6
2,163,723 + MPMX26_02109 0.47 -1.1
2,163,723 + MPMX26_02109 0.47 -0.4
2,163,723 + MPMX26_02109 0.47 -1.0
2,163,723 + MPMX26_02109 0.47 -0.1
2,163,723 + MPMX26_02109 0.47 -1.4
2,163,723 + MPMX26_02109 0.47 -0.6
2,163,723 + MPMX26_02109 0.47 -0.8
2,163,723 + MPMX26_02109 0.47 +0.1
2,163,733 + MPMX26_02109 0.49 -0.5
2,163,905 + MPMX26_02109 0.77 -0.3
2,163,946 + MPMX26_02109 0.84 +0.2
2,163,957 + MPMX26_02109 0.86 -0.7
2,163,970 + MPMX26_02109 0.88 +1.3
2,164,021 + -0.5
2,164,030 + -0.0
2,164,040 + +0.2
2,164,057 + +0.2
2,164,315 + -0.8
2,164,436 + MPMX26_02110 0.26 +0.3
2,164,571 + MPMX26_02110 0.56 +0.9
2,164,571 + MPMX26_02110 0.56 +1.0
2,164,932 - -0.5

Or see this region's nucleotide sequence