Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01316

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01314 and MPMX26_01315 are separated by 213 nucleotidesMPMX26_01315 and MPMX26_01316 are separated by 13 nucleotidesMPMX26_01316 and MPMX26_01317 are separated by 15 nucleotidesMPMX26_01317 and MPMX26_01318 are separated by 175 nucleotides MPMX26_01314: MPMX26_01314 - 30S ribosomal protein S20, at 1,389,542 to 1,389,811 _01314 MPMX26_01315: MPMX26_01315 - hypothetical protein, at 1,390,025 to 1,390,690 _01315 MPMX26_01316: MPMX26_01316 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 1,390,704 to 1,391,213 _01316 MPMX26_01317: MPMX26_01317 - hypothetical protein, at 1,391,229 to 1,392,002 _01317 MPMX26_01318: MPMX26_01318 - hypothetical protein, at 1,392,178 to 1,392,537 _01318 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -1 0 1 2 3at 1390.626 kb on - strandat 1390.811 kb on + strand, within MPMX26_01316at 1390.941 kb on + strand, within MPMX26_01316at 1390.944 kb on + strand, within MPMX26_01316at 1391.037 kb on + strand, within MPMX26_01316at 1391.264 kb on + strandat 1391.280 kb on + strandat 1391.282 kb on + strandat 1391.292 kb on + strandat 1391.292 kb on + strandat 1391.306 kb on + strandat 1391.348 kb on + strand, within MPMX26_01317at 1391.348 kb on + strand, within MPMX26_01317at 1391.414 kb on + strand, within MPMX26_01317at 1391.522 kb on + strand, within MPMX26_01317at 1391.558 kb on + strand, within MPMX26_01317at 1391.582 kb on + strand, within MPMX26_01317at 1391.625 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.648 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.669 kb on + strand, within MPMX26_01317at 1391.672 kb on + strand, within MPMX26_01317at 1391.672 kb on + strand, within MPMX26_01317at 1391.750 kb on + strand, within MPMX26_01317at 1391.834 kb on + strand, within MPMX26_01317at 1391.949 kb on + strandat 1392.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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1,390,626 - -0.1
1,390,811 + MPMX26_01316 0.21 +3.0
1,390,941 + MPMX26_01316 0.46 +0.8
1,390,944 + MPMX26_01316 0.47 -0.0
1,391,037 + MPMX26_01316 0.65 +0.4
1,391,264 + +0.7
1,391,280 + +0.3
1,391,282 + -0.0
1,391,292 + -0.7
1,391,292 + +0.9
1,391,306 + +0.5
1,391,348 + MPMX26_01317 0.15 +0.2
1,391,348 + MPMX26_01317 0.15 +0.6
1,391,414 + MPMX26_01317 0.24 +0.8
1,391,522 + MPMX26_01317 0.38 -0.4
1,391,558 + MPMX26_01317 0.43 +1.0
1,391,582 + MPMX26_01317 0.46 -0.1
1,391,625 + MPMX26_01317 0.51 -0.2
1,391,648 + MPMX26_01317 0.54 +1.4
1,391,648 + MPMX26_01317 0.54 +0.5
1,391,648 + MPMX26_01317 0.54 +0.2
1,391,648 + MPMX26_01317 0.54 +0.6
1,391,648 + MPMX26_01317 0.54 -0.3
1,391,648 + MPMX26_01317 0.54 +0.5
1,391,648 + MPMX26_01317 0.54 +0.9
1,391,648 + MPMX26_01317 0.54 +1.3
1,391,669 + MPMX26_01317 0.57 +0.1
1,391,669 + MPMX26_01317 0.57 +1.3
1,391,669 + MPMX26_01317 0.57 -0.8
1,391,669 + MPMX26_01317 0.57 +1.0
1,391,669 + MPMX26_01317 0.57 +0.9
1,391,672 + MPMX26_01317 0.57 +0.1
1,391,672 + MPMX26_01317 0.57 +0.1
1,391,750 + MPMX26_01317 0.67 +0.0
1,391,834 + MPMX26_01317 0.78 +0.6
1,391,949 + +2.3
1,392,201 + +0.1

Or see this region's nucleotide sequence