Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01012

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01011 and MPMX26_01012 are separated by 191 nucleotidesMPMX26_01012 and MPMX26_01013 are separated by 53 nucleotidesMPMX26_01013 and MPMX26_01014 are separated by 81 nucleotides MPMX26_01011: MPMX26_01011 - hypothetical protein, at 1,067,164 to 1,067,988 _01011 MPMX26_01012: MPMX26_01012 - Isocitrate dehydrogenase [NADP], at 1,068,180 to 1,069,436 _01012 MPMX26_01013: MPMX26_01013 - hypothetical protein, at 1,069,490 to 1,070,083 _01013 MPMX26_01014: MPMX26_01014 - putative isomerase YddE, at 1,070,165 to 1,070,992 _01014 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -1 0 1 2at 1067.224 kb on - strandat 1067.241 kb on - strandat 1067.292 kb on - strand, within MPMX26_01011at 1067.292 kb on - strand, within MPMX26_01011at 1067.307 kb on - strand, within MPMX26_01011at 1067.383 kb on - strand, within MPMX26_01011at 1067.383 kb on - strand, within MPMX26_01011at 1067.388 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.407 kb on - strand, within MPMX26_01011at 1067.431 kb on - strand, within MPMX26_01011at 1067.443 kb on - strand, within MPMX26_01011at 1067.443 kb on - strand, within MPMX26_01011at 1067.448 kb on - strand, within MPMX26_01011at 1067.501 kb on - strand, within MPMX26_01011at 1067.502 kb on - strand, within MPMX26_01011at 1067.547 kb on - strand, within MPMX26_01011at 1067.560 kb on - strand, within MPMX26_01011at 1067.560 kb on - strand, within MPMX26_01011at 1067.560 kb on - strand, within MPMX26_01011at 1067.560 kb on - strand, within MPMX26_01011at 1067.657 kb on - strand, within MPMX26_01011at 1067.657 kb on - strand, within MPMX26_01011at 1067.680 kb on - strand, within MPMX26_01011at 1067.704 kb on - strand, within MPMX26_01011at 1067.704 kb on - strand, within MPMX26_01011at 1067.733 kb on - strand, within MPMX26_01011at 1067.733 kb on - strand, within MPMX26_01011at 1067.853 kb on - strand, within MPMX26_01011at 1067.853 kb on - strand, within MPMX26_01011at 1067.853 kb on - strand, within MPMX26_01011at 1067.868 kb on - strand, within MPMX26_01011at 1067.926 kb on - strandat 1067.926 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1067.965 kb on - strandat 1068.231 kb on + strandat 1068.240 kb on - strandat 1068.252 kb on + strandat 1068.297 kb on + strandat 1068.297 kb on + strandat 1068.317 kb on + strand, within MPMX26_01012at 1068.327 kb on + strand, within MPMX26_01012at 1068.474 kb on + strand, within MPMX26_01012at 1068.482 kb on + strand, within MPMX26_01012at 1068.482 kb on + strand, within MPMX26_01012at 1068.483 kb on + strand, within MPMX26_01012at 1068.540 kb on + strand, within MPMX26_01012at 1068.549 kb on + strand, within MPMX26_01012at 1068.549 kb on + strand, within MPMX26_01012at 1068.549 kb on + strand, within MPMX26_01012at 1068.559 kb on + strand, within MPMX26_01012at 1068.559 kb on + strand, within MPMX26_01012at 1068.570 kb on + strand, within MPMX26_01012at 1068.578 kb on + strand, within MPMX26_01012at 1068.585 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.590 kb on + strand, within MPMX26_01012at 1068.621 kb on + strand, within MPMX26_01012at 1068.621 kb on + strand, within MPMX26_01012at 1068.792 kb on + strand, within MPMX26_01012at 1068.809 kb on + strand, within MPMX26_01012at 1068.809 kb on + strand, within MPMX26_01012at 1068.809 kb on + strand, within MPMX26_01012at 1068.863 kb on + strand, within MPMX26_01012at 1068.869 kb on + strand, within MPMX26_01012at 1068.869 kb on + strand, within MPMX26_01012at 1068.887 kb on + strand, within MPMX26_01012at 1068.950 kb on + strand, within MPMX26_01012at 1068.953 kb on + strand, within MPMX26_01012at 1068.993 kb on + strand, within MPMX26_01012at 1069.043 kb on + strand, within MPMX26_01012at 1069.151 kb on + strand, within MPMX26_01012at 1069.186 kb on + strand, within MPMX26_01012at 1069.191 kb on + strand, within MPMX26_01012at 1069.203 kb on + strand, within MPMX26_01012at 1069.218 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.223 kb on + strand, within MPMX26_01012at 1069.239 kb on + strand, within MPMX26_01012at 1069.257 kb on + strand, within MPMX26_01012at 1069.275 kb on + strand, within MPMX26_01012at 1069.285 kb on + strand, within MPMX26_01012at 1069.285 kb on + strand, within MPMX26_01012at 1069.285 kb on + strand, within MPMX26_01012at 1069.285 kb on + strand, within MPMX26_01012at 1069.334 kb on + strandat 1069.334 kb on + strandat 1069.383 kb on + strandat 1069.383 kb on + strandat 1069.383 kb on + strandat 1069.383 kb on + strandat 1069.383 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.393 kb on + strandat 1069.732 kb on - strand, within MPMX26_01013at 1069.732 kb on - strand, within MPMX26_01013at 1069.732 kb on - strand, within MPMX26_01013at 1069.954 kb on - strand, within MPMX26_01013at 1069.981 kb on - strand, within MPMX26_01013at 1070.384 kb on + strand, within MPMX26_01014

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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1,067,224 - +0.3
1,067,241 - -0.3
1,067,292 - MPMX26_01011 0.16 +0.2
1,067,292 - MPMX26_01011 0.16 +0.3
1,067,307 - MPMX26_01011 0.17 -1.1
1,067,383 - MPMX26_01011 0.27 +0.0
1,067,383 - MPMX26_01011 0.27 +0.3
1,067,388 - MPMX26_01011 0.27 +0.2
1,067,407 - MPMX26_01011 0.29 +0.4
1,067,407 - MPMX26_01011 0.29 +0.4
1,067,407 - MPMX26_01011 0.29 +0.3
1,067,407 - MPMX26_01011 0.29 +0.1
1,067,407 - MPMX26_01011 0.29 +0.3
1,067,407 - MPMX26_01011 0.29 -1.1
1,067,407 - MPMX26_01011 0.29 -0.9
1,067,407 - MPMX26_01011 0.29 -0.4
1,067,407 - MPMX26_01011 0.29 +0.4
1,067,407 - MPMX26_01011 0.29 +0.1
1,067,407 - MPMX26_01011 0.29 -0.3
1,067,407 - MPMX26_01011 0.29 -0.1
1,067,407 - MPMX26_01011 0.29 -0.2
1,067,407 - MPMX26_01011 0.29 +0.3
1,067,431 - MPMX26_01011 0.32 -0.0
1,067,443 - MPMX26_01011 0.34 +0.5
1,067,443 - MPMX26_01011 0.34 -0.0
1,067,448 - MPMX26_01011 0.34 -1.0
1,067,501 - MPMX26_01011 0.41 +1.1
1,067,502 - MPMX26_01011 0.41 +0.4
1,067,547 - MPMX26_01011 0.46 -0.5
1,067,560 - MPMX26_01011 0.48 +0.4
1,067,560 - MPMX26_01011 0.48 -0.1
1,067,560 - MPMX26_01011 0.48 -0.3
1,067,560 - MPMX26_01011 0.48 -0.1
1,067,657 - MPMX26_01011 0.60 -1.2
1,067,657 - MPMX26_01011 0.60 +0.2
1,067,680 - MPMX26_01011 0.63 +0.2
1,067,704 - MPMX26_01011 0.65 +0.6
1,067,704 - MPMX26_01011 0.65 +0.3
1,067,733 - MPMX26_01011 0.69 +0.2
1,067,733 - MPMX26_01011 0.69 -0.7
1,067,853 - MPMX26_01011 0.84 -0.4
1,067,853 - MPMX26_01011 0.84 +0.2
1,067,853 - MPMX26_01011 0.84 +0.2
1,067,868 - MPMX26_01011 0.85 -0.1
1,067,926 - -0.3
1,067,926 - +2.1
1,067,965 - -0.5
1,067,965 - -0.8
1,067,965 - +0.6
1,067,965 - -0.9
1,067,965 - +0.1
1,067,965 - +0.3
1,067,965 - +0.0
1,067,965 - -0.0
1,067,965 - -0.3
1,067,965 - +0.0
1,067,965 - -0.1
1,068,231 + +0.7
1,068,240 - +0.4
1,068,252 + +0.5
1,068,297 + +0.9
1,068,297 + +0.2
1,068,317 + MPMX26_01012 0.11 +0.5
1,068,327 + MPMX26_01012 0.12 +0.1
1,068,474 + MPMX26_01012 0.23 +0.4
1,068,482 + MPMX26_01012 0.24 +0.4
1,068,482 + MPMX26_01012 0.24 +0.2
1,068,483 + MPMX26_01012 0.24 -0.2
1,068,540 + MPMX26_01012 0.29 +0.3
1,068,549 + MPMX26_01012 0.29 -0.5
1,068,549 + MPMX26_01012 0.29 +0.4
1,068,549 + MPMX26_01012 0.29 -0.0
1,068,559 + MPMX26_01012 0.30 +0.3
1,068,559 + MPMX26_01012 0.30 +0.2
1,068,570 + MPMX26_01012 0.31 -0.1
1,068,578 + MPMX26_01012 0.32 +0.5
1,068,585 + MPMX26_01012 0.32 +0.7
1,068,590 + MPMX26_01012 0.33 +0.4
1,068,590 + MPMX26_01012 0.33 -0.0
1,068,590 + MPMX26_01012 0.33 +0.7
1,068,590 + MPMX26_01012 0.33 +0.2
1,068,590 + MPMX26_01012 0.33 +0.0
1,068,590 + MPMX26_01012 0.33 +0.3
1,068,590 + MPMX26_01012 0.33 +0.0
1,068,590 + MPMX26_01012 0.33 +0.2
1,068,590 + MPMX26_01012 0.33 +0.0
1,068,590 + MPMX26_01012 0.33 +0.6
1,068,590 + MPMX26_01012 0.33 +0.7
1,068,621 + MPMX26_01012 0.35 +0.0
1,068,621 + MPMX26_01012 0.35 +0.8
1,068,792 + MPMX26_01012 0.49 +0.1
1,068,809 + MPMX26_01012 0.50 -0.2
1,068,809 + MPMX26_01012 0.50 +0.9
1,068,809 + MPMX26_01012 0.50 +0.6
1,068,863 + MPMX26_01012 0.54 +0.4
1,068,869 + MPMX26_01012 0.55 -0.0
1,068,869 + MPMX26_01012 0.55 +0.3
1,068,887 + MPMX26_01012 0.56 +0.1
1,068,950 + MPMX26_01012 0.61 +0.3
1,068,953 + MPMX26_01012 0.61 +0.3
1,068,993 + MPMX26_01012 0.65 +0.1
1,069,043 + MPMX26_01012 0.69 +0.4
1,069,151 + MPMX26_01012 0.77 +0.2
1,069,186 + MPMX26_01012 0.80 +0.7
1,069,191 + MPMX26_01012 0.80 +0.1
1,069,203 + MPMX26_01012 0.81 -0.1
1,069,218 + MPMX26_01012 0.83 -0.5
1,069,223 + MPMX26_01012 0.83 +0.4
1,069,223 + MPMX26_01012 0.83 +0.4
1,069,223 + MPMX26_01012 0.83 +0.5
1,069,223 + MPMX26_01012 0.83 +0.3
1,069,223 + MPMX26_01012 0.83 +0.2
1,069,223 + MPMX26_01012 0.83 +0.2
1,069,223 + MPMX26_01012 0.83 +1.0
1,069,223 + MPMX26_01012 0.83 -0.3
1,069,223 + MPMX26_01012 0.83 -0.3
1,069,223 + MPMX26_01012 0.83 +0.2
1,069,223 + MPMX26_01012 0.83 -0.3
1,069,239 + MPMX26_01012 0.84 +0.4
1,069,257 + MPMX26_01012 0.86 +0.4
1,069,275 + MPMX26_01012 0.87 +0.1
1,069,285 + MPMX26_01012 0.88 +0.3
1,069,285 + MPMX26_01012 0.88 +0.8
1,069,285 + MPMX26_01012 0.88 -0.1
1,069,285 + MPMX26_01012 0.88 -0.4
1,069,334 + +0.7
1,069,334 + -0.0
1,069,383 + +0.1
1,069,383 + +0.1
1,069,383 + -0.1
1,069,383 + +0.6
1,069,383 + +0.6
1,069,393 + +0.7
1,069,393 + +0.5
1,069,393 + -0.4
1,069,393 + +1.2
1,069,393 + +0.2
1,069,393 + +0.1
1,069,393 + +0.9
1,069,732 - MPMX26_01013 0.41 +0.7
1,069,732 - MPMX26_01013 0.41 +2.3
1,069,732 - MPMX26_01013 0.41 +0.8
1,069,954 - MPMX26_01013 0.78 +0.5
1,069,981 - MPMX26_01013 0.83 -0.1
1,070,384 + MPMX26_01014 0.26 -0.0

Or see this region's nucleotide sequence