Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00530

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00528 and MPMX26_00529 are separated by 11 nucleotidesMPMX26_00529 and MPMX26_00530 are separated by 3 nucleotidesMPMX26_00530 and MPMX26_00531 are separated by 625 nucleotides MPMX26_00528: MPMX26_00528 - NAD(P) transhydrogenase subunit alpha part 1, at 558,834 to 559,961 _00528 MPMX26_00529: MPMX26_00529 - NAD(P) transhydrogenase subunit alpha, at 559,973 to 560,296 _00529 MPMX26_00530: MPMX26_00530 - NAD(P) transhydrogenase subunit beta, at 560,300 to 561,757 _00530 MPMX26_00531: MPMX26_00531 - Ribosomal silencing factor RsfS, at 562,383 to 562,784 _00531 Position (kb) 560 561 562Strain fitness (log2 ratio) -2 -1 0 1at 559.931 kb on - strandat 559.946 kb on + strandat 560.402 kb on + strandat 560.527 kb on + strand, within MPMX26_00530at 560.755 kb on + strand, within MPMX26_00530at 560.835 kb on + strand, within MPMX26_00530at 560.950 kb on + strand, within MPMX26_00530at 561.096 kb on + strand, within MPMX26_00530at 561.125 kb on + strand, within MPMX26_00530at 561.125 kb on + strand, within MPMX26_00530at 561.125 kb on + strand, within MPMX26_00530at 561.169 kb on + strand, within MPMX26_00530at 561.169 kb on + strand, within MPMX26_00530at 561.274 kb on - strand, within MPMX26_00530at 561.305 kb on + strand, within MPMX26_00530at 561.305 kb on + strand, within MPMX26_00530at 561.329 kb on + strand, within MPMX26_00530at 561.361 kb on + strand, within MPMX26_00530at 561.371 kb on - strand, within MPMX26_00530at 561.545 kb on + strand, within MPMX26_00530at 561.749 kb on + strandat 562.087 kb on + strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.388 kb on - strandat 562.400 kb on - strandat 562.424 kb on - strand, within MPMX26_00531at 562.463 kb on - strand, within MPMX26_00531at 562.464 kb on - strand, within MPMX26_00531at 562.466 kb on - strand, within MPMX26_00531at 562.471 kb on - strand, within MPMX26_00531at 562.471 kb on - strand, within MPMX26_00531at 562.574 kb on - strand, within MPMX26_00531at 562.594 kb on - strand, within MPMX26_00531at 562.667 kb on - strand, within MPMX26_00531at 562.677 kb on + strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.685 kb on - strand, within MPMX26_00531at 562.715 kb on - strand, within MPMX26_00531at 562.715 kb on - strand, within MPMX26_00531at 562.717 kb on - strand, within MPMX26_00531at 562.725 kb on - strand, within MPMX26_00531

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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559,931 - -1.4
559,946 + -0.2
560,402 + -1.4
560,527 + MPMX26_00530 0.16 +0.4
560,755 + MPMX26_00530 0.31 -0.5
560,835 + MPMX26_00530 0.37 -1.6
560,950 + MPMX26_00530 0.45 -1.0
561,096 + MPMX26_00530 0.55 +0.3
561,125 + MPMX26_00530 0.57 -1.6
561,125 + MPMX26_00530 0.57 -1.6
561,125 + MPMX26_00530 0.57 -0.8
561,169 + MPMX26_00530 0.60 +0.3
561,169 + MPMX26_00530 0.60 -2.2
561,274 - MPMX26_00530 0.67 -1.7
561,305 + MPMX26_00530 0.69 -1.3
561,305 + MPMX26_00530 0.69 +0.3
561,329 + MPMX26_00530 0.71 -1.2
561,361 + MPMX26_00530 0.73 -1.6
561,371 - MPMX26_00530 0.73 -1.5
561,545 + MPMX26_00530 0.85 -0.3
561,749 + +0.5
562,087 + -0.5
562,388 - +0.1
562,388 - +0.2
562,388 - +0.6
562,388 - +0.2
562,400 - +0.2
562,424 - MPMX26_00531 0.10 +0.7
562,463 - MPMX26_00531 0.20 +0.3
562,464 - MPMX26_00531 0.20 +0.1
562,466 - MPMX26_00531 0.21 +0.7
562,471 - MPMX26_00531 0.22 +0.5
562,471 - MPMX26_00531 0.22 -0.4
562,574 - MPMX26_00531 0.48 -0.4
562,594 - MPMX26_00531 0.52 -0.0
562,667 - MPMX26_00531 0.71 +0.3
562,677 + MPMX26_00531 0.73 +0.4
562,685 - MPMX26_00531 0.75 +0.5
562,685 - MPMX26_00531 0.75 -0.1
562,685 - MPMX26_00531 0.75 +0.4
562,715 - MPMX26_00531 0.83 +0.7
562,715 - MPMX26_00531 0.83 -0.5
562,717 - MPMX26_00531 0.83 -0.7
562,725 - MPMX26_00531 0.85 +0.5

Or see this region's nucleotide sequence