Strain Fitness in Escherichia fergusonii Becca around EFB2_04785

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
5,034,921	+				+0.4
5,034,947	+				+0.9
5,035,043	+				+0.6
5,035,055	+				-1.1
5,035,055	+				-0.9
5,035,056	-				+0.4
5,035,077	+				-0.0
5,035,077	+				-0.7
5,035,077	+				+2.7
5,035,077	+				+0.2
5,035,077	+				-0.3
5,035,077	+				+0.9
5,035,077	+				-2.9
5,035,077	+				-0.9
5,035,077	+				+0.2
5,035,077	+				-0.6
5,035,077	+				-0.1
5,035,077	+				+1.0
5,035,077	+				-1.1
5,035,077	+				-0.4
5,035,077	+				+0.0
5,035,077	+				-1.0
5,035,077	+				-1.3
5,035,077	+				-3.4
5,035,077	+				-2.6
5,035,077	+				-2.1
5,035,077	+				+0.0
5,035,077	+				+1.1
5,035,077	+				-0.1
5,035,077	+				+0.5
5,035,077	+				-2.1
5,035,077	+				+0.6
5,035,077	+				+1.6
5,035,077	+				-0.1
5,035,078	-				+0.3
5,035,078	-				+2.1
5,035,078	-				+1.5
5,035,078	-				-0.8
5,035,078	-				-1.9
5,035,078	-				+0.2
5,035,078	-				-1.0
5,035,078	-				-2.7
5,035,078	-				-1.5
5,035,078	-				+0.8
5,035,078	-				-2.2
5,035,078	-				+0.1
5,035,078	-				+1.1
5,035,078	-				+0.6
5,035,078	-				+1.1
5,035,078	-				+0.4
5,035,078	-				-0.8
5,035,078	-				+0.8
5,035,078	-				-0.3
5,035,078	-				+0.3
5,035,078	-				-1.0
5,035,078	-				-0.9
5,035,078	-				-2.4
5,035,078	-				+0.5
5,035,078	-				+0.9
5,035,078	-				-0.9
5,035,078	-				-0.9
5,035,078	-				-0.2
5,035,078	-				-1.4
5,035,078	-				+0.2
5,035,078	-				-0.4
5,035,078	-				-0.4
5,035,078	-				-1.3
5,035,078	-				-2.2
5,035,078	-				+1.5
5,035,078	-				-1.4
5,035,078	-				-0.2
5,035,078	-				-0.0
5,035,097	+				+1.0
5,035,097	+				+0.8
5,035,097	+				-1.2
5,035,098	-				-0.4
5,035,098	-				-0.0
5,035,098	-				-0.7
5,035,098	-				-0.6
5,035,098	-				-0.1
5,035,098	-				+0.7
5,035,098	-				+0.1
5,035,114	+				+1.0
5,035,114	+				+0.3
5,035,114	+				-0.4
5,035,114	+				+0.4
5,035,115	-				+0.9
5,035,115	-				+1.3
5,035,155	+				-1.8
5,035,155	+				+0.5
5,035,155	+				-0.6
5,035,155	+				-1.9
5,035,156	-				+0.6
5,035,156	-				+0.2
5,035,156	-				-2.2
5,035,156	-				-0.4
5,035,156	-				-0.4
5,035,156	-				+2.3
5,035,156	-				+1.8
5,035,158	+				+1.2
5,035,158	+				+0.9
5,035,158	+				-0.8
5,035,158	+				+0.0
5,035,158	+				-0.1
5,035,158	+				+1.3
5,035,158	+				-1.4
5,035,158	+				+0.8
5,035,159	-				+0.6
5,035,159	-				+1.5
5,035,159	-				+0.1
5,035,159	-				-3.3
5,035,159	-				-0.0
5,035,177	+				-1.7
5,035,177	+				-1.6
5,035,177	+				+0.7
5,035,177	+				-0.6
5,035,177	+				+0.7
5,035,177	+				-2.9
5,035,177	+				-1.7
5,035,178	-				-3.1
5,035,178	-				-1.2
5,035,178	-				-0.9
5,035,178	-				-1.1
5,035,178	-				+0.9
5,035,178	-				+0.8
5,035,178	-				+0.4
5,035,178	-				+0.5
5,035,178	-				-0.3
5,035,187	+				+3.6
5,035,187	+				-0.1
5,035,187	+				+0.3
5,035,187	+				+0.8
5,035,187	+				-0.1
5,035,187	+				+1.0
5,035,187	+				+2.2
5,035,187	+				-1.8
5,035,188	-				+0.8
5,035,188	-				-0.5
5,035,188	-				-0.4
5,035,188	-				+0.6
5,035,188	-				+0.5
5,035,188	-				+1.1
5,035,188	-				+1.8
5,035,188	-				-0.4
5,035,188	-				+1.2
5,035,188	-				-0.3
5,035,189	+				-2.3
5,035,189	+				+0.6
5,035,190	-				+0.3
5,035,207	-		EFB2_04784	0.12	+0.1
5,035,207	-		EFB2_04784	0.12	-2.7
5,035,257	+		EFB2_04784	0.18	-0.0
5,035,257	+		EFB2_04784	0.18	+0.8
5,035,257	+		EFB2_04784	0.18	-0.5
5,035,257	+		EFB2_04784	0.18	-2.1
5,035,258	-		EFB2_04784	0.19	-1.4
5,035,258	-		EFB2_04784	0.19	-0.3
5,035,283	+		EFB2_04784	0.22	+0.4
5,035,284	-		EFB2_04784	0.22	-0.8
5,035,371	-		EFB2_04784	0.33	+0.9
5,035,409	+		EFB2_04784	0.38	-0.6
5,035,410	-		EFB2_04784	0.38	+1.0
5,035,410	-		EFB2_04784	0.38	+0.3
5,035,460	+		EFB2_04784	0.45	-0.3
5,035,460	+		EFB2_04784	0.45	-0.6
5,035,460	+		EFB2_04784	0.45	+1.5
5,035,460	+		EFB2_04784	0.45	-2.9
5,035,460	+		EFB2_04784	0.45	-1.7
5,035,460	+		EFB2_04784	0.45	+0.5
5,035,460	+		EFB2_04784	0.45	+0.3
5,035,461	-		EFB2_04784	0.45	+0.6
5,035,461	-		EFB2_04784	0.45	-0.6
5,035,461	-		EFB2_04784	0.45	+0.1
5,035,461	-		EFB2_04784	0.45	-1.4
5,035,461	-		EFB2_04784	0.45	-3.7
5,035,461	-		EFB2_04784	0.45	-2.3
5,035,461	-		EFB2_04784	0.45	-3.1
5,035,594	+		EFB2_04784	0.62	-0.1
5,035,594	+		EFB2_04784	0.62	+0.1
5,035,595	-		EFB2_04784	0.62	-0.7
5,035,595	-		EFB2_04784	0.62	+1.3
5,035,595	-		EFB2_04784	0.62	+1.2
5,035,595	-		EFB2_04784	0.62	+0.1
5,035,630	+		EFB2_04784	0.67	+0.0
5,035,630	+		EFB2_04784	0.67	-0.2
5,035,631	-		EFB2_04784	0.67	-1.5
5,035,631	-		EFB2_04784	0.67	-1.4
5,035,649	+		EFB2_04784	0.70	-0.6
5,035,649	+		EFB2_04784	0.70	-3.1
5,035,650	-		EFB2_04784	0.70	-0.2
5,035,696	+		EFB2_04784	0.76	-1.1
5,035,721	+		EFB2_04784	0.79	-0.2
5,035,722	-		EFB2_04784	0.79	+0.7
5,035,750	+		EFB2_04784	0.83	-1.2
5,035,750	+		EFB2_04784	0.83	-0.2
5,035,751	-		EFB2_04784	0.83	-1.4
5,035,751	-		EFB2_04784	0.83	+0.3
5,035,751	-		EFB2_04784	0.83	-1.2
5,035,765	+		EFB2_04784	0.85	-1.3
5,035,765	+		EFB2_04784	0.85	+0.4
5,035,766	-		EFB2_04784	0.85	+1.2
5,035,775	+		EFB2_04784	0.86	+0.1
5,035,775	+		EFB2_04784	0.86	-0.5
5,035,775	+		EFB2_04784	0.86	-1.2
5,035,775	+		EFB2_04784	0.86	-1.8
5,035,775	+		EFB2_04784	0.86	-1.9
5,035,775	+		EFB2_04784	0.86	-1.2
5,035,775	+		EFB2_04784	0.86	-1.7
5,035,775	+		EFB2_04784	0.86	-1.5
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	-0.2
5,035,775	+		EFB2_04784	0.86	+0.6
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	-1.9
5,035,775	+		EFB2_04784	0.86	-0.3
5,035,775	+		EFB2_04784	0.86	-1.2
5,035,775	+		EFB2_04784	0.86	+0.4
5,035,775	+		EFB2_04784	0.86	-1.2
5,035,775	+		EFB2_04784	0.86	-1.7
5,035,775	+		EFB2_04784	0.86	+1.9
5,035,775	+		EFB2_04784	0.86	+0.0
5,035,775	+		EFB2_04784	0.86	-1.6
5,035,775	+		EFB2_04784	0.86	-0.3
5,035,775	+		EFB2_04784	0.86	-1.4
5,035,775	+		EFB2_04784	0.86	+1.0
5,035,775	+		EFB2_04784	0.86	-0.3
5,035,775	+		EFB2_04784	0.86	-2.7
5,035,775	+		EFB2_04784	0.86	-1.7
5,035,775	+		EFB2_04784	0.86	-2.9
5,035,775	+		EFB2_04784	0.86	+0.8
5,035,775	+		EFB2_04784	0.86	-1.4
5,035,775	+		EFB2_04784	0.86	+1.2
5,035,775	+		EFB2_04784	0.86	-3.9
5,035,775	+		EFB2_04784	0.86	+0.8
5,035,775	+		EFB2_04784	0.86	+1.6
5,035,775	+		EFB2_04784	0.86	+1.2
5,035,775	+		EFB2_04784	0.86	-0.1
5,035,775	+		EFB2_04784	0.86	-1.7
5,035,775	+		EFB2_04784	0.86	-2.2
5,035,775	+		EFB2_04784	0.86	+0.5
5,035,775	+		EFB2_04784	0.86	-0.9
5,035,775	+		EFB2_04784	0.86	+1.2
5,035,775	+		EFB2_04784	0.86	-0.8
5,035,775	+		EFB2_04784	0.86	-1.9
5,035,775	+		EFB2_04784	0.86	+0.0
5,035,775	+		EFB2_04784	0.86	-1.9
5,035,775	+		EFB2_04784	0.86	-0.9
5,035,775	+		EFB2_04784	0.86	+0.4
5,035,775	+		EFB2_04784	0.86	+0.1
5,035,775	+		EFB2_04784	0.86	-0.2
5,035,775	+		EFB2_04784	0.86	+0.7
5,035,775	+		EFB2_04784	0.86	-1.4
5,035,775	+		EFB2_04784	0.86	+0.7
5,035,775	+		EFB2_04784	0.86	+0.3
5,035,775	+		EFB2_04784	0.86	+1.3
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	+1.3
5,035,775	+		EFB2_04784	0.86	+1.6
5,035,775	+		EFB2_04784	0.86	-1.8
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	-0.8
5,035,775	+		EFB2_04784	0.86	+0.0
5,035,775	+		EFB2_04784	0.86	+1.0
5,035,775	+		EFB2_04784	0.86	-2.3
5,035,775	+		EFB2_04784	0.86	-2.0
5,035,775	+		EFB2_04784	0.86	-4.1
5,035,775	+		EFB2_04784	0.86	-1.9
5,035,775	+		EFB2_04784	0.86	+2.4
5,035,775	+		EFB2_04784	0.86	+0.3
5,035,775	+		EFB2_04784	0.86	-0.9
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	+1.4
5,035,775	+		EFB2_04784	0.86	+0.6
5,035,775	+		EFB2_04784	0.86	-0.2
5,035,775	+		EFB2_04784	0.86	-2.7
5,035,775	+		EFB2_04784	0.86	-0.9
5,035,775	+		EFB2_04784	0.86	-2.7
5,035,775	+		EFB2_04784	0.86	+0.9
5,035,775	+		EFB2_04784	0.86	-0.2
5,035,775	+		EFB2_04784	0.86	+0.5
5,035,775	+		EFB2_04784	0.86	-0.4
5,035,775	+		EFB2_04784	0.86	-1.6
5,035,775	+		EFB2_04784	0.86	+0.3
5,035,775	+		EFB2_04784	0.86	+1.8
5,035,775	+		EFB2_04784	0.86	+1.1
5,035,775	+		EFB2_04784	0.86	+0.5
5,035,775	+		EFB2_04784	0.86	-0.4
5,035,775	+		EFB2_04784	0.86	-2.0
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	-2.1
5,035,775	+		EFB2_04784	0.86	-0.7
5,035,775	+		EFB2_04784	0.86	-1.3
5,035,775	+		EFB2_04784	0.86	-0.5
5,035,775	+		EFB2_04784	0.86	-0.5
5,035,775	+		EFB2_04784	0.86	-1.7
5,035,775	+		EFB2_04784	0.86	-0.7
5,035,775	+		EFB2_04784	0.86	+0.6
5,035,775	+		EFB2_04784	0.86	+0.2
5,035,775	+		EFB2_04784	0.86	-3.7
5,035,775	+		EFB2_04784	0.86	+0.8
5,035,776	-		EFB2_04784	0.86	+0.5
5,035,776	-		EFB2_04784	0.86	-1.5
5,035,776	-		EFB2_04784	0.86	+0.4
5,035,776	-		EFB2_04784	0.86	-1.7
5,035,776	-		EFB2_04784	0.86	-1.8
5,035,776	-		EFB2_04784	0.86	+1.1
5,035,776	-		EFB2_04784	0.86	+0.4
5,035,776	-		EFB2_04784	0.86	+0.4
5,035,776	-		EFB2_04784	0.86	+0.3
5,035,776	-		EFB2_04784	0.86	+2.5
5,035,776	-		EFB2_04784	0.86	-2.7
5,035,776	-		EFB2_04784	0.86	+0.9
5,035,776	-		EFB2_04784	0.86	-2.3
5,035,776	-		EFB2_04784	0.86	-0.3
5,035,776	-		EFB2_04784	0.86	-2.4
5,035,776	-		EFB2_04784	0.86	-0.4
5,035,776	-		EFB2_04784	0.86	-1.5
5,035,776	-		EFB2_04784	0.86	+1.8
5,035,776	-		EFB2_04784	0.86	-1.5
5,035,776	-		EFB2_04784	0.86	-0.5
5,035,776	-		EFB2_04784	0.86	+1.6
5,035,776	-		EFB2_04784	0.86	+0.2
5,035,776	-		EFB2_04784	0.86	-1.5
5,035,776	-		EFB2_04784	0.86	-3.2
5,035,776	-		EFB2_04784	0.86	+1.3
5,035,776	-		EFB2_04784	0.86	+1.2
5,035,776	-		EFB2_04784	0.86	+0.2
5,035,776	-		EFB2_04784	0.86	-0.2
5,035,776	-		EFB2_04784	0.86	+1.3
5,035,776	-		EFB2_04784	0.86	+0.7
5,035,776	-		EFB2_04784	0.86	+0.6
5,035,776	-		EFB2_04784	0.86	+1.4
5,035,776	-		EFB2_04784	0.86	-0.6
5,035,776	-		EFB2_04784	0.86	+0.5
5,035,776	-		EFB2_04784	0.86	+1.0
5,035,776	-		EFB2_04784	0.86	-0.6
5,035,776	-		EFB2_04784	0.86	-1.8
5,035,776	-		EFB2_04784	0.86	+0.6
5,035,776	-		EFB2_04784	0.86	+0.9
5,035,776	-		EFB2_04784	0.86	+0.1
5,035,776	-		EFB2_04784	0.86	-0.8
5,035,776	-		EFB2_04784	0.86	+0.9
5,035,776	-		EFB2_04784	0.86	+1.9
5,035,776	-		EFB2_04784	0.86	+0.3
5,035,776	-		EFB2_04784	0.86	-0.4
5,035,776	-		EFB2_04784	0.86	+0.0
5,035,776	-		EFB2_04784	0.86	+0.0
5,035,776	-		EFB2_04784	0.86	-0.0
5,035,776	-		EFB2_04784	0.86	-0.8
5,035,776	-		EFB2_04784	0.86	-0.1
5,035,776	-		EFB2_04784	0.86	+0.2
5,035,776	-		EFB2_04784	0.86	+0.8
5,035,776	-		EFB2_04784	0.86	-1.1
5,035,776	-		EFB2_04784	0.86	+1.1
5,035,776	-		EFB2_04784	0.86	-1.1
5,035,776	-		EFB2_04784	0.86	+0.2
5,035,776	-		EFB2_04784	0.86	-0.4
5,035,776	-		EFB2_04784	0.86	+0.9
5,035,776	-		EFB2_04784	0.86	+1.3
5,035,776	-		EFB2_04784	0.86	+0.5
5,035,776	-		EFB2_04784	0.86	-0.6
5,035,776	-		EFB2_04784	0.86	-0.2
5,035,776	-		EFB2_04784	0.86	+1.3
5,035,776	-		EFB2_04784	0.86	-0.2
5,035,776	-		EFB2_04784	0.86	-0.4
5,035,776	-		EFB2_04784	0.86	-1.4
5,035,776	-		EFB2_04784	0.86	-2.1
5,035,776	-		EFB2_04784	0.86	-1.8
5,035,776	-		EFB2_04784	0.86	+0.5
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