Strain Fitness in Escherichia fergusonii Becca around EFB2_04244

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,458,041	+		EFB2_04243	0.38	-0.5
4,458,041	+		EFB2_04243	0.38	-1.1
4,458,041	+		EFB2_04243	0.38	-1.9
4,458,041	+		EFB2_04243	0.38	-2.5
4,458,041	+		EFB2_04243	0.38	-0.0
4,458,041	+		EFB2_04243	0.38	+0.4
4,458,041	+		EFB2_04243	0.38	-2.5
4,458,041	+		EFB2_04243	0.38	+1.8
4,458,041	+		EFB2_04243	0.38	-0.2
4,458,041	+		EFB2_04243	0.38	-0.1
4,458,041	+		EFB2_04243	0.38	-2.1
4,458,041	+		EFB2_04243	0.38	+0.2
4,458,041	+		EFB2_04243	0.38	-0.8
4,458,041	+		EFB2_04243	0.38	+2.5
4,458,041	+		EFB2_04243	0.38	-1.1
4,458,041	+		EFB2_04243	0.38	-0.0
4,458,041	+		EFB2_04243	0.38	+0.1
4,458,041	+		EFB2_04243	0.38	-1.7
4,458,041	+		EFB2_04243	0.38	+0.2
4,458,041	+		EFB2_04243	0.38	-0.9
4,458,041	+		EFB2_04243	0.38	-0.5
4,458,041	+		EFB2_04243	0.38	-0.5
4,458,041	+		EFB2_04243	0.38	-1.6
4,458,041	+		EFB2_04243	0.38	-0.5
4,458,041	+		EFB2_04243	0.38	+1.7
4,458,041	+		EFB2_04243	0.38	+0.0
4,458,041	+		EFB2_04243	0.38	+0.3
4,458,042	-		EFB2_04243	0.38	+0.8
4,458,042	-		EFB2_04243	0.38	-0.7
4,458,042	-		EFB2_04243	0.38	+0.5
4,458,042	-		EFB2_04243	0.38	-2.3
4,458,042	-		EFB2_04243	0.38	+1.1
4,458,042	-		EFB2_04243	0.38	-1.4
4,458,042	-		EFB2_04243	0.38	-0.5
4,458,042	-		EFB2_04243	0.38	+0.7
4,458,042	-		EFB2_04243	0.38	-0.9
4,458,042	-		EFB2_04243	0.38	-2.5
4,458,042	-		EFB2_04243	0.38	+0.6
4,458,042	-		EFB2_04243	0.38	-2.7
4,458,042	-		EFB2_04243	0.38	-1.3
4,458,042	-		EFB2_04243	0.38	+1.1
4,458,042	-		EFB2_04243	0.38	-0.2
4,458,042	-		EFB2_04243	0.38	+0.8
4,458,042	-		EFB2_04243	0.38	-0.4
4,458,042	-		EFB2_04243	0.38	-1.0
4,458,042	-		EFB2_04243	0.38	-0.8
4,458,042	-		EFB2_04243	0.38	+1.5
4,458,042	-		EFB2_04243	0.38	-0.5
4,458,042	-		EFB2_04243	0.38	-1.8
4,458,042	-		EFB2_04243	0.38	+0.1
4,458,101	+		EFB2_04243	0.50	-1.0
4,458,101	+		EFB2_04243	0.50	+0.7
4,458,102	-		EFB2_04243	0.50	+0.3
4,458,143	+		EFB2_04243	0.59	+0.4
4,458,143	+		EFB2_04243	0.59	+0.6
4,458,143	+		EFB2_04243	0.59	+0.5
4,458,143	+		EFB2_04243	0.59	-1.8
4,458,143	+		EFB2_04243	0.59	-0.6
4,458,143	+		EFB2_04243	0.59	-0.4
4,458,144	-		EFB2_04243	0.59	-0.3
4,458,144	-		EFB2_04243	0.59	-0.7
4,458,144	-		EFB2_04243	0.59	+0.2
4,458,144	-		EFB2_04243	0.59	+1.2
4,458,144	-		EFB2_04243	0.59	-1.3
4,458,144	-		EFB2_04243	0.59	+0.8
4,458,144	-		EFB2_04243	0.59	-0.8
4,458,144	-		EFB2_04243	0.59	+0.8
4,458,144	-		EFB2_04243	0.59	-0.2
4,458,204	+		EFB2_04243	0.72	+1.2
4,458,205	-		EFB2_04243	0.72	+2.5
4,458,212	+		EFB2_04243	0.73	+0.7
4,458,212	+		EFB2_04243	0.73	+1.5
4,458,212	+		EFB2_04243	0.73	-1.8
4,458,238	+		EFB2_04243	0.79	-0.1
4,458,253	+		EFB2_04243	0.82	+0.3
4,458,253	+		EFB2_04243	0.82	+1.0
4,458,253	+		EFB2_04243	0.82	+0.4
4,458,253	+		EFB2_04243	0.82	-0.1
4,458,253	+		EFB2_04243	0.82	-1.4
4,458,253	+		EFB2_04243	0.82	+0.5
4,458,253	+		EFB2_04243	0.82	-2.1
4,458,253	+		EFB2_04243	0.82	-2.4
4,458,253	+		EFB2_04243	0.82	-2.3
4,458,253	+		EFB2_04243	0.82	+0.1
4,458,253	+		EFB2_04243	0.82	+0.0
4,458,254	-		EFB2_04243	0.82	-0.3
4,458,254	-		EFB2_04243	0.82	+1.5
4,458,254	-		EFB2_04243	0.82	-1.3
4,458,254	-		EFB2_04243	0.82	+0.7
4,458,254	-		EFB2_04243	0.82	+2.1
4,458,254	-		EFB2_04243	0.82	+1.1
4,458,254	-		EFB2_04243	0.82	-1.0
4,458,254	-		EFB2_04243	0.82	-0.0
4,458,254	-		EFB2_04243	0.82	-2.9
4,458,254	-		EFB2_04243	0.82	-0.5
4,458,254	-		EFB2_04243	0.82	-0.8
4,458,254	-		EFB2_04243	0.82	-1.1
4,458,267	+		EFB2_04243	0.85	+0.2
4,458,267	+		EFB2_04243	0.85	-0.1
4,458,267	+		EFB2_04243	0.85	-0.6
4,458,267	+		EFB2_04243	0.85	-2.1
4,458,268	-		EFB2_04243	0.85	-1.4
4,458,268	-		EFB2_04243	0.85	-1.1
4,458,268	-		EFB2_04243	0.85	-0.8
4,458,268	-		EFB2_04243	0.85	-1.8
4,458,268	-		EFB2_04243	0.85	+1.7
4,458,290	+		EFB2_04243	0.90	+0.4
4,458,290	+		EFB2_04243	0.90	+0.8
4,458,291	-				+1.2
4,458,305	+				-1.1
4,458,306	-				+2.0
4,458,308	+				-0.8
4,458,308	+				+2.5
4,458,308	+				+0.1
4,458,308	+				+0.7
4,458,308	+				+1.5
4,458,308	+				+0.2
4,458,308	+				-3.9
4,458,308	+				-1.2
4,458,308	+				-1.8
4,458,308	+				-0.0
4,458,308	+				-0.3
4,458,308	+				+1.0
4,458,308	+				+0.8
4,458,309	-				-1.6
4,458,309	-				+0.1
4,458,309	-				+0.1
4,458,309	-				-0.7
4,458,309	-				+1.2
4,458,312	+				+1.3
4,458,312	+				-1.7
4,458,312	+				-0.2
4,458,312	+				+1.4
4,458,312	+				+0.5
4,458,312	+				+0.4
4,458,312	+				+1.1
4,458,312	+				-2.4
4,458,313	-				-0.0
4,458,313	-				+0.0
4,458,313	-				+0.2
4,458,313	-				+0.6
4,458,313	-				+0.2
4,458,313	-				-0.2
4,458,328	+				+0.1
4,458,328	+				-2.2
4,458,328	+				-2.2
4,458,328	+				-2.6
4,458,328	+				+0.4
4,458,328	+				-0.4
4,458,328	+				+1.4
4,458,328	+				-1.3
4,458,328	+				-0.1
4,458,328	+				-1.2
4,458,329	-				-2.5
4,458,329	-				+0.3
4,458,329	-				-1.1
4,458,329	-				-2.6
4,458,329	-				+0.1
4,458,329	-				+0.0
4,458,329	-				-0.5
4,458,329	-				+0.6
4,458,418	-				+0.3
4,458,418	-				-1.9
4,458,421	+				+1.5
4,458,421	+				+1.0
4,458,421	+				+0.2
4,458,421	+				-0.3
4,458,421	+				+0.3
4,458,421	+				+0.9
4,458,421	+				+0.8
4,458,421	+				-3.6
4,458,421	+				+0.2
4,458,421	+				+0.4
4,458,421	+				-1.1
4,458,421	+				+1.2
4,458,421	+				-0.3
4,458,421	+				+1.0
4,458,421	+				-0.5
4,458,421	+				+1.5
4,458,421	+				+0.2
4,458,421	+				+0.1
4,458,421	+				-1.2
4,458,421	+				+1.0
4,458,422	-				-1.6
4,458,422	-				+0.4
4,458,422	-				+0.6
4,458,422	-				-0.4
4,458,422	-				+0.1
4,458,422	-				+1.7
4,458,422	-				+1.7
4,458,422	-				-2.0
4,458,422	-				+0.0
4,458,422	-				-0.2
4,458,422	-				-0.6
4,458,422	-				-0.8
4,458,427	+				-0.1
4,458,427	+				-0.5
4,458,427	+				-1.1
4,458,427	+				-0.1
4,458,427	+				+1.5
4,458,427	+				+2.1
4,458,427	+				-1.6
4,458,427	+				-0.4
4,458,427	+				+0.2
4,458,427	+				+0.4
4,458,427	+				+0.2
4,458,428	-				-0.2
4,458,428	-				-1.9
4,458,428	-				+0.6
4,458,428	-				+1.6
4,458,428	-				+0.8
4,458,428	-				-2.7
4,458,428	-				+1.1
4,458,428	-				+1.1
4,458,428	-				-0.5
4,458,428	-				+0.4
4,458,428	-				-2.7
4,458,428	-				-0.3
4,458,428	-				+0.4
4,458,428	-				-0.5
4,458,428	-				+0.0
4,458,428	-				+0.8
4,458,428	-				+0.7
4,458,428	-				+0.3
4,458,428	-				+0.9
4,458,428	-				-3.4
4,458,431	+				+1.3
4,458,431	+				-0.3
4,458,431	+				-0.4
4,458,431	+				-2.3
4,458,431	+				+0.2
4,458,431	+				+2.1
4,458,431	+				-0.3
4,458,431	+				-1.4
4,458,431	+				+0.1
4,458,431	+				+1.6
4,458,431	+				-1.4
4,458,431	+				+0.9
4,458,431	+				-1.1
4,458,432	-				+0.7
4,458,432	-				-0.3
4,458,432	-				+0.3
4,458,432	-				+0.3
4,458,432	-				+0.4
4,458,432	-				-1.5
4,458,432	-				-0.2
4,458,432	-				-1.0
4,458,432	-				-1.2
4,458,432	-				-1.4
4,458,445	-				+0.2
4,458,453	+				+0.2
4,458,454	-				-0.1
4,458,464	+				-0.3
4,458,464	+				-0.2
4,458,464	+				+0.7
4,458,464	+				+0.9
4,458,464	+				-0.6
4,458,464	+				-1.3
4,458,465	-				+0.9
4,458,465	-				+0.9
4,458,465	-				+0.4
4,458,465	-				-0.4
4,458,473	+				+0.9
4,458,474	-				-1.3
4,458,482	+				+0.9
4,458,483	-				-0.5
4,458,489	+				-0.7
4,458,489	+				-1.4
4,458,489	+				+1.0
4,458,490	-				+0.2
4,458,490	-				+0.7
4,458,506	-				+0.9
4,458,518	+				+1.5
4,458,518	+				-0.6
4,458,518	+				+1.5
4,458,519	-				+1.2
4,458,524	+				+1.5
4,458,524	+				-0.3
4,458,524	+				-1.3
4,458,525	-				-0.4
4,458,525	-				-2.4
4,458,525	-				-0.0
4,458,525	-				+0.0
4,458,525	-				+2.2
4,458,527	+				-0.2
4,458,527	+				-0.1
4,458,528	-				+0.3
4,458,528	-				-0.3
4,458,528	-				+0.9
4,458,528	-				-0.1
4,458,530	+				+1.8
4,458,531	-				-1.2
4,458,575	+				-1.3
4,458,587	+				-0.8
4,458,587	+				-1.4
4,458,587	+				+1.6
4,458,587	+				-0.3
4,458,587	+				-1.3
4,458,588	-				+0.3
4,458,588	-				+1.0
4,458,588	-				+0.9
4,458,588	-				+1.6
4,458,588	-				-0.2
4,458,588	-				+2.3
4,458,588	-				+1.6
4,458,588	-				+1.4
4,458,611	-				-3.2
4,458,611	-				+0.4
4,458,617	-				-0.1
4,458,617	-				-0.7
4,458,617	-				+1.0
4,458,630	+				+0.6
4,458,631	-				-0.7
4,458,664	+				-3.0
4,458,664	+				-0.1
4,458,664	+				-0.8
4,458,664	+				+1.2
4,458,664	+				+0.6
4,458,664	+				+0.6
4,458,664	+				+1.3
4,458,712	+				-0.4
4,458,713	-				-2.0
4,458,713	-				+0.0
4,458,713	-				-1.8
4,458,737	+				-0.0
4,458,737	+				+0.9
4,458,737	+				-2.2
4,458,738	-				-3.1
4,458,738	-				+0.0
4,458,738	-				-0.7
4,458,785	+				+0.4
4,458,785	+				-0.8
4,458,785	+				-0.3
4,458,785	+				-1.5
4,458,785	+				+0.3
4,458,785	+				+0.3
4,458,785	+				-1.3
4,458,785	+				-0.6
4,458,785	+				+0.6
4,458,785	+				+2.3
4,458,785	+				+0.3
4,458,785	+				-0.6
4,458,786	-				+1.2
4,458,786	-				+2.3
4,458,786	-				-3.3
4,458,786	-				-1.9
4,458,786	-				+0.6
4,458,786	-				-0.6
4,458,786	-				+1.3
4,458,790	+				+0.8
4,458,790	+				-0.7
4,458,790	+				-0.9
4,458,790	+				-1.0
4,458,790	+				-0.8
4,458,826	+				+0.6
4,458,826	+				-0.8
4,458,826	+				-1.7
4,458,826	+				-2.4
4,458,826	+				-2.1
4,458,826	+				-0.0
4,458,826	+				+0.0
4,458,827	-				+0.2
4,458,827	-				-1.5
4,458,827	-				-0.1
4,458,830	-				-0.9
4,458,830	-				-0.6
4,458,852	-				+0.6
4,458,872	+				+0.7
4,458,872	+				-1.5
4,458,872	+				-0.5
4,458,872	+				-0.6
4,458,872	+				-0.0
4,458,872	+				-0.9
4,458,872	+				-1.8
4,458,873	-				+1.1
4,458,873	-				+0.6
4,458,873	-				-0.3
4,458,873	-				+0.4
4,458,873	-				-0.3
4,458,874	+				+0.8
4,458,874	+				-0.9
4,458,874	+				-1.2
4,458,874	+				+0.8
4,458,874	+				-1.6
4,458,875	-				+0.0
4,458,875	-				+1.9
4,458,898	-				-1.2
4,458,915	+				-0.9
4,458,915	+				+0.5
4,458,915	+				-2.2
4,458,915	+				-0.8
4,458,915	+				+0.2
4,458,916	-				+0.9
4,458,916	-				-1.6
4,458,916	-				+0.2
4,458,953	+				-2.5
4,458,954	-				-1.6
4,458,954	-				-0.3
4,458,956	+				+3.1
4,458,956	+				+1.0
4,458,956	+				+0.1
4,458,956	+				+1.5
4,458,960	+				-1.6
4,458,960	+				-1.1
4,458,960	+				-1.9
4,458,961	-				-1.2
4,458,961	-				+0.5
4,458,961	-				-2.6
4,458,961	-				+0.6
4,458,961	-				+1.0
4,458,998	+				+0.8
4,459,021	-				-1.5
4,459,021	-				-0.6
4,459,026	+				-0.2
4,459,026	+				+1.3
4,459,026	+				+1.4
4,459,027	-				-2.3
4,459,027	-				-2.0
4,459,027	-				-0.4
4,459,032	+				-0.5
4,459,033	-				-0.6
4,459,033	-				-0.4
4,459,055	-				-1.1
4,459,058	+				+1.7
4,459,058	+				+0.8
4,459,058	+				+1.0
4,459,059	-				-3.0
4,459,059	-				-0.5
4,459,087	-		EFB2_04244	0.22	+0.9
4,459,127	-		EFB2_04244	0.41	-0.5
4,459,144	+		EFB2_04244	0.50	-0.9
4,459,144	+		EFB2_04244	0.50	-0.5
4,459,144	+		EFB2_04244	0.50	+0.2
4,459,144	+		EFB2_04244	0.50	-0.3
4,459,145	-		EFB2_04244	0.50	-1.6
4,459,145	-		EFB2_04244	0.50	-2.3
4,459,145	-		EFB2_04244	0.50	-0.2
4,459,147	-		EFB2_04244	0.51	-1.4
4,459,147	-		EFB2_04244	0.51	-1.3
4,459,147	-		EFB2_04244	0.51	-2.3
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