Strain Fitness in Escherichia fergusonii Becca around EFB2_03923

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,109,882	+		EFB2_03922	0.49	+1.3
4,109,882	+		EFB2_03922	0.49	-1.8
4,109,910	+		EFB2_03922	0.51	-0.1
4,109,910	+		EFB2_03922	0.51	-0.7
4,109,910	+		EFB2_03922	0.51	-1.9
4,109,911	-		EFB2_03922	0.51	-0.7
4,109,911	-		EFB2_03922	0.51	-1.1
4,109,911	-		EFB2_03922	0.51	+0.6
4,109,911	-		EFB2_03922	0.51	-3.3
4,109,956	+		EFB2_03922	0.54	+0.3
4,109,956	+		EFB2_03922	0.54	-0.1
4,109,957	-		EFB2_03922	0.54	+1.3
4,110,013	-		EFB2_03922	0.57	-0.2
4,110,017	+		EFB2_03922	0.58	-0.7
4,110,017	+		EFB2_03922	0.58	-2.3
4,110,017	+		EFB2_03922	0.58	+0.1
4,110,017	+		EFB2_03922	0.58	-0.5
4,110,017	+		EFB2_03922	0.58	+1.3
4,110,017	+		EFB2_03922	0.58	-0.2
4,110,017	+		EFB2_03922	0.58	+2.4
4,110,017	+		EFB2_03922	0.58	+2.0
4,110,018	-		EFB2_03922	0.58	+0.2
4,110,018	-		EFB2_03922	0.58	+2.5
4,110,018	-		EFB2_03922	0.58	-0.0
4,110,018	-		EFB2_03922	0.58	-0.7
4,110,018	-		EFB2_03922	0.58	+0.4
4,110,018	-		EFB2_03922	0.58	-2.2
4,110,018	-		EFB2_03922	0.58	-0.7
4,110,037	+		EFB2_03922	0.59	-1.6
4,110,037	+		EFB2_03922	0.59	+0.1
4,110,038	-		EFB2_03922	0.59	-0.5
4,110,038	-		EFB2_03922	0.59	+1.7
4,110,142	+		EFB2_03922	0.66	-2.4
4,110,164	+		EFB2_03922	0.67	-1.2
4,110,164	+		EFB2_03922	0.67	+0.5
4,110,164	+		EFB2_03922	0.67	-1.3
4,110,165	-		EFB2_03922	0.67	-1.5
4,110,192	-		EFB2_03922	0.69	-1.8
4,110,265	+		EFB2_03922	0.74	-2.3
4,110,266	-		EFB2_03922	0.74	-1.2
4,110,319	+		EFB2_03922	0.77	-1.4
4,110,319	+		EFB2_03922	0.77	+1.0
4,110,320	-		EFB2_03922	0.77	+0.1
4,110,320	-		EFB2_03922	0.77	+0.0
4,110,320	-		EFB2_03922	0.77	+0.6
4,110,353	+		EFB2_03922	0.79	+0.1
4,110,353	+		EFB2_03922	0.79	+0.5
4,110,402	+		EFB2_03922	0.82	-1.9
4,110,402	+		EFB2_03922	0.82	-0.8
4,110,402	+		EFB2_03922	0.82	-0.8
4,110,402	+		EFB2_03922	0.82	-0.2
4,110,402	+		EFB2_03922	0.82	+1.2
4,110,402	+		EFB2_03922	0.82	-0.8
4,110,402	+		EFB2_03922	0.82	-2.1
4,110,402	+		EFB2_03922	0.82	-3.3
4,110,402	+		EFB2_03922	0.82	+1.9
4,110,402	+		EFB2_03922	0.82	+1.3
4,110,402	+		EFB2_03922	0.82	-2.0
4,110,402	+		EFB2_03922	0.82	+0.7
4,110,402	+		EFB2_03922	0.82	-1.5
4,110,402	+		EFB2_03922	0.82	-0.1
4,110,402	+		EFB2_03922	0.82	-1.0
4,110,402	+		EFB2_03922	0.82	+1.6
4,110,402	+		EFB2_03922	0.82	+0.2
4,110,403	-		EFB2_03922	0.83	+0.4
4,110,403	-		EFB2_03922	0.83	-0.1
4,110,403	-		EFB2_03922	0.83	+0.5
4,110,403	-		EFB2_03922	0.83	-0.6
4,110,403	-		EFB2_03922	0.83	-1.0
4,110,403	-		EFB2_03922	0.83	-2.1
4,110,403	-		EFB2_03922	0.83	-0.9
4,110,403	-		EFB2_03922	0.83	+0.1
4,110,403	-		EFB2_03922	0.83	+2.4
4,110,403	-		EFB2_03922	0.83	+0.1
4,110,403	-		EFB2_03922	0.83	+0.1
4,110,403	-		EFB2_03922	0.83	-1.8
4,110,403	-		EFB2_03922	0.83	-0.9
4,110,403	-		EFB2_03922	0.83	+0.9
4,110,403	-		EFB2_03922	0.83	-0.5
4,110,403	-		EFB2_03922	0.83	+0.7
4,110,403	-		EFB2_03922	0.83	+1.0
4,110,403	-		EFB2_03922	0.83	-0.0
4,110,403	-		EFB2_03922	0.83	+0.1
4,110,403	-		EFB2_03922	0.83	-0.2
4,110,403	-		EFB2_03922	0.83	-0.5
4,110,403	-		EFB2_03922	0.83	-0.6
4,110,403	-		EFB2_03922	0.83	-0.5
4,110,403	-		EFB2_03922	0.83	+1.7
4,110,403	-		EFB2_03922	0.83	-0.5
4,110,403	-		EFB2_03922	0.83	-1.7
4,110,406	+		EFB2_03922	0.83	-3.3
4,110,407	-		EFB2_03922	0.83	-0.3
4,110,407	-		EFB2_03922	0.83	+3.3
4,110,407	-		EFB2_03922	0.83	-1.0
4,110,407	-		EFB2_03922	0.83	-2.9
4,110,407	-		EFB2_03922	0.83	-1.6
4,110,434	+		EFB2_03922	0.85	+1.1
4,110,434	+		EFB2_03922	0.85	-1.3
4,110,435	-		EFB2_03922	0.85	-0.3
4,110,435	-		EFB2_03922	0.85	-0.4
4,110,435	-		EFB2_03922	0.85	-0.3
4,110,468	+		EFB2_03922	0.87	+1.3
4,110,468	+		EFB2_03922	0.87	+0.0
4,110,468	+		EFB2_03922	0.87	-1.0
4,110,468	+		EFB2_03922	0.87	+1.0
4,110,468	+		EFB2_03922	0.87	-1.4
4,110,468	+		EFB2_03922	0.87	+0.4
4,110,468	+		EFB2_03922	0.87	-2.7
4,110,468	+		EFB2_03922	0.87	-0.1
4,110,468	+		EFB2_03922	0.87	-3.2
4,110,468	+		EFB2_03922	0.87	-4.0
4,110,468	+		EFB2_03922	0.87	+0.3
4,110,469	-		EFB2_03922	0.87	+0.2
4,110,469	-		EFB2_03922	0.87	-1.4
4,110,469	-		EFB2_03922	0.87	+2.3
4,110,469	-		EFB2_03922	0.87	-0.8
4,110,469	-		EFB2_03922	0.87	-0.7
4,110,469	-		EFB2_03922	0.87	-0.3
4,110,469	-		EFB2_03922	0.87	+1.4
4,110,469	-		EFB2_03922	0.87	-2.3
4,110,469	-		EFB2_03922	0.87	-0.6
4,110,469	-		EFB2_03922	0.87	-2.6
4,110,469	-		EFB2_03922	0.87	-1.0
4,110,469	-		EFB2_03922	0.87	-0.2
4,110,469	-		EFB2_03922	0.87	-0.2
4,110,478	+		EFB2_03922	0.87	-1.1
4,110,478	+		EFB2_03922	0.87	-0.1
4,110,478	+		EFB2_03922	0.87	-1.1
4,110,478	+		EFB2_03922	0.87	-0.3
4,110,478	+		EFB2_03922	0.87	+1.2
4,110,478	+		EFB2_03922	0.87	+3.9
4,110,478	+		EFB2_03922	0.87	+0.5
4,110,478	+		EFB2_03922	0.87	+1.5
4,110,478	+		EFB2_03922	0.87	-0.6
4,110,478	+		EFB2_03922	0.87	+0.3
4,110,478	+		EFB2_03922	0.87	+0.7
4,110,478	+		EFB2_03922	0.87	+0.2
4,110,478	+		EFB2_03922	0.87	+1.4
4,110,478	+		EFB2_03922	0.87	+1.1
4,110,478	+		EFB2_03922	0.87	+0.6
4,110,478	+		EFB2_03922	0.87	-0.8
4,110,479	-		EFB2_03922	0.87	-1.3
4,110,479	-		EFB2_03922	0.87	-2.6
4,110,479	-		EFB2_03922	0.87	+0.7
4,110,479	-		EFB2_03922	0.87	-2.9
4,110,479	-		EFB2_03922	0.87	-0.0
4,110,479	-		EFB2_03922	0.87	-3.3
4,110,479	-		EFB2_03922	0.87	+0.1
4,110,479	-		EFB2_03922	0.87	-2.0
4,110,479	-		EFB2_03922	0.87	+0.0
4,110,479	-		EFB2_03922	0.87	-0.1
4,110,479	-		EFB2_03922	0.87	+0.4
4,110,479	-		EFB2_03922	0.87	-1.7
4,110,479	-		EFB2_03922	0.87	-1.5
4,110,520	+				-0.3
4,110,520	+				-1.8
4,110,520	+				-1.5
4,110,520	+				-0.3
4,110,521	-				+0.5
4,110,521	-				-2.1
4,110,521	-				+0.1
4,110,521	-				-0.0
4,110,521	-				-0.6
4,110,521	-				+3.1
4,110,521	-				-0.0
4,110,521	-				+0.4
4,110,521	-				+0.6
4,110,521	-				+0.3
4,110,521	-				-0.0
4,110,521	-				-3.4
4,110,521	-				+0.1
4,110,521	-				+1.1
4,110,524	+				-1.3
4,110,524	+				-1.4
4,110,524	+				-1.8
4,110,524	+				-0.9
4,110,524	+				+0.3
4,110,524	+				-3.0
4,110,524	+				-1.3
4,110,524	+				+0.9
4,110,524	+				-1.0
4,110,525	-				-3.4
4,110,525	-				-2.3
4,110,525	-				-2.3
4,110,525	-				-1.7
4,110,539	-				+0.7
4,110,596	+				+1.0
4,110,597	-				-0.4
4,110,597	-				+0.6
4,110,673	+				-2.3
4,110,673	+				+0.9
4,110,673	+				+1.0
4,110,673	+				+0.7
4,110,673	+				+0.8
4,110,673	+				-0.6
4,110,673	+				-2.7
4,110,673	+				-1.3
4,110,673	+				+2.1
4,110,673	+				+1.0
4,110,673	+				-0.2
4,110,673	+				-1.5
4,110,674	-				-1.8
4,110,674	-				+0.9
4,110,674	-				-3.0
4,110,674	-				+0.3
4,110,674	-				+0.6
4,110,674	-				+0.4
4,110,674	-				-0.3
4,110,674	-				+1.1
4,110,677	+				-1.4
4,110,677	+				-0.4
4,110,677	+				-0.6
4,110,677	+				+1.7
4,110,678	-				+0.2
4,110,678	-				+0.8
4,110,678	-				+1.9
4,110,678	-				+3.0
4,110,678	-				-3.2
4,110,678	-				+1.3
4,110,678	-				+2.9
4,110,686	-				-1.0
4,110,686	-				-0.8
4,110,692	-				-0.0
4,110,723	+				+0.6
4,110,723	+				+0.9
4,110,723	+				+0.5
4,110,723	+				+1.9
4,110,723	+				-1.0
4,110,723	+				-0.0
4,110,723	+				+0.9
4,110,723	+				+1.2
4,110,723	+				+1.5
4,110,723	+				-3.0
4,110,723	+				-2.4
4,110,723	+				+1.0
4,110,724	-				+0.9
4,110,724	-				+0.4
4,110,724	-				+0.1
4,110,724	-				+1.5
4,110,724	-				+1.4
4,110,724	-				-1.8
4,110,724	-				+0.1
4,110,724	-				-0.5
4,110,736	+				-0.2
4,110,765	+				+2.6
4,110,765	+				-0.8
4,110,766	-				+1.9
4,110,766	-				+0.2
4,110,775	+				+0.4
4,110,775	+				-0.7
4,110,775	+				-1.2
4,110,775	+				+1.1
4,110,776	-				-1.2
4,110,776	-				+2.6
4,110,811	+				-0.5
4,110,811	+				+1.0
4,110,811	+				+0.4
4,110,812	-				-1.7
4,110,812	-				-1.1
4,110,812	-				+0.0
4,110,812	-				-1.7
4,110,812	-				-2.7
4,110,820	+				+0.5
4,110,820	+				-0.0
4,110,821	-				+1.7
4,110,831	+				+0.2
4,110,831	+				+0.5
4,110,831	+				-2.0
4,110,831	+				+1.1
4,110,831	+				+0.1
4,110,831	+				+0.9
4,110,831	+				+1.4
4,110,831	+				-0.8
4,110,831	+				-0.3
4,110,832	-				-0.0
4,110,832	-				-0.2
4,110,832	-				-2.3
4,110,832	-				-0.3
4,110,864	+				+1.5
4,110,900	-				+2.3
4,110,928	+		EFB2_03923	0.16	-0.9
4,110,928	+		EFB2_03923	0.16	-2.0
4,110,939	+		EFB2_03923	0.20	-0.5
4,110,987	+		EFB2_03923	0.35	+2.1
4,110,987	+		EFB2_03923	0.35	+0.5
4,110,987	+		EFB2_03923	0.35	-1.1
4,110,987	+		EFB2_03923	0.35	-0.9
4,110,987	+		EFB2_03923	0.35	-0.6
4,110,987	+		EFB2_03923	0.35	+0.4
4,110,987	+		EFB2_03923	0.35	-0.7
4,110,988	-		EFB2_03923	0.36	-2.5
4,110,988	-		EFB2_03923	0.36	-2.1
4,110,988	-		EFB2_03923	0.36	+2.2
4,110,988	-		EFB2_03923	0.36	-1.3
4,110,988	-		EFB2_03923	0.36	-0.7
4,110,988	-		EFB2_03923	0.36	+0.6
4,110,988	-		EFB2_03923	0.36	+0.9
4,110,988	-		EFB2_03923	0.36	+0.8
4,110,988	-		EFB2_03923	0.36	+0.4
4,110,988	-		EFB2_03923	0.36	-1.9
4,110,988	-		EFB2_03923	0.36	+1.2
4,110,991	+		EFB2_03923	0.37	+0.7
4,110,992	-		EFB2_03923	0.37	-2.0
4,110,992	-		EFB2_03923	0.37	+0.3
4,111,051	+		EFB2_03923	0.56	-2.7
4,111,051	+		EFB2_03923	0.56	+0.1
4,111,051	+		EFB2_03923	0.56	-4.0
4,111,051	+		EFB2_03923	0.56	-0.3
4,111,052	-		EFB2_03923	0.56	-2.1
4,111,055	+		EFB2_03923	0.57	+0.0
4,111,055	+		EFB2_03923	0.57	+0.4
4,111,055	+		EFB2_03923	0.57	+0.1
4,111,055	+		EFB2_03923	0.57	-0.6
4,111,056	-		EFB2_03923	0.58	-0.5
4,111,056	-		EFB2_03923	0.58	+0.1
4,111,056	-		EFB2_03923	0.58	-1.7
4,111,056	-		EFB2_03923	0.58	+0.6
4,111,056	-		EFB2_03923	0.58	-0.9
4,111,056	-		EFB2_03923	0.58	-0.3
4,111,095	-		EFB2_03923	0.70	+1.3
4,111,162	-				+0.8
4,111,175	+				+1.9
4,111,175	+				+0.4
4,111,175	+				-0.0
4,111,175	+				+2.6
4,111,175	+				+1.0
4,111,175	+				+0.5
4,111,175	+				-0.4
4,111,175	+				-0.1
4,111,175	+				+1.1
4,111,175	+				-0.3
4,111,175	+				+1.2
4,111,175	+				+0.2
4,111,176	-				+0.1
4,111,176	-				-2.0
4,111,176	-				-0.3
4,111,176	-				+0.5
4,111,176	-				-2.2
4,111,176	-				+1.1
4,111,176	-				-2.5
4,111,176	-				-0.7
4,111,176	-				-0.9
4,111,185	-				+0.3
4,111,185	-				-1.3
4,111,185	-				+0.3
4,111,194	+				+0.8
4,111,194	+				-0.9
4,111,194	+				-3.2
4,111,195	-				-0.3
4,111,195	-				-1.4
4,111,210	+				-1.6
4,111,210	+				-1.7
4,111,210	+				+1.2
4,111,210	+				-0.5
4,111,210	+				-2.1
4,111,211	-				+1.2
4,111,211	-				-0.9
4,111,211	-				+0.3
4,111,211	-				-0.6
4,111,211	-				+1.5
4,111,211	-				-0.3
4,111,237	+				-1.0
4,111,237	+				-0.2
4,111,237	+				-0.2
4,111,237	+				-0.2
4,111,237	+				-0.0
4,111,237	+				-2.5
4,111,237	+				-2.1
4,111,237	+				-2.1
4,111,237	+				+2.1
4,111,237	+				-2.1
4,111,238	-				-3.6
4,111,238	-				-1.7
4,111,238	-				+0.2
4,111,238	-				+0.6
4,111,238	-				+1.0
4,111,238	-				-2.1
4,111,238	-				+0.1
4,111,238	-				-1.7
4,111,238	-				-0.6
4,111,238	-				+1.0
4,111,238	-				+0.4
4,111,238	-				+0.1
4,111,238	-				-1.8
4,111,238	-				+2.5
4,111,238	-				+0.9
4,111,238	-				+0.7
4,111,238	-				-0.0
4,111,241	+				-2.0
4,111,241	+				-1.6
4,111,241	+				-1.1
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4,111,241	+				-1.4
4,111,241	+				-1.3
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4,111,241	+				+0.2
4,111,241	+				+0.5
4,111,241	+				-0.3
4,111,241	+				-0.9
4,111,241	+				-0.2
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4,111,241	+				-0.8
4,111,241	+				-2.5
4,111,242	-				+0.3
4,111,242	-				+1.5
4,111,242	-				-2.9
4,111,242	-				-1.6
4,111,242	-				-3.4
4,111,242	-				-0.2
4,111,242	-				+0.2
4,111,242	-				+0.3
4,111,242	-				-1.1
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4,111,242	-				+0.7
4,111,242	-				-0.6
4,111,242	-				+1.4
4,111,242	-				-2.8
4,111,242	-				+1.4
4,111,244	+				+4.7
4,111,244	+				+0.6
4,111,244	+				+0.7
4,111,244	+				-1.3
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4,111,244	+				+0.5
4,111,244	+				-2.7
4,111,244	+				+1.0
4,111,244	+				-2.8
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4,111,245	-				-2.3
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4,111,245	-				-1.5
4,111,245	-				-2.7
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4,111,245	-				-0.2
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4,111,283	+				-2.8
4,111,284	-				+1.1
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4,111,284	-				-2.3
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4,111,284	-				+0.7
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4,111,284	-				+3.3
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4,111,323	+				+0.5
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4,111,446	+		EFB2_03924	0.18	-2.3
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4,111,447	-		EFB2_03924	0.18	-0.9
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4,111,447	-		EFB2_03924	0.18	-0.4
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4,111,447	-		EFB2_03924	0.18	-0.9
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4,111,450	-		EFB2_03924	0.18	-1.8
4,111,450	-		EFB2_03924	0.18	+2.6
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4,111,693	+		EFB2_03924	0.46	+1.7
4,111,693	+		EFB2_03924	0.46	+0.1
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4,111,757	-		EFB2_03924	0.54	-2.2
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4,111,757	-		EFB2_03924	0.54	-0.5
4,111,757	-		EFB2_03924	0.54	+0.2
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4,111,757	-		EFB2_03924	0.54	-0.5
4,111,757	-		EFB2_03924	0.54	+0.3
4,111,757	-		EFB2_03924	0.54	+0.5
4,111,777	+		EFB2_03924	0.56	-1.4
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4,111,926	-		EFB2_03924	0.73	-1.1
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4,111,967	+		EFB2_03924	0.78	-0.4
4,111,967	+		EFB2_03924	0.78	-2.3
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4,111,967	+		EFB2_03924	0.78	-1.6
4,111,967	+		EFB2_03924	0.78	-0.0
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4,112,016	+		EFB2_03924	0.84	+1.1
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4,112,039	-		EFB2_03924	0.86	-0.5
4,112,039	-		EFB2_03924	0.86	-2.6
4,112,079	-				-0.4
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4,112,081	+				+1.1
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4,112,081	+				-0.7
4,112,081	+				+0.5
4,112,081	+				+0.1
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4,112,081	+				+1.6
4,112,081	+				-3.1
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4,112,081	+				-2.0
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4,112,081	+				-3.0
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4,112,082	-				+1.2
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4,112,082	-				+1.1
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4,112,115	+				-3.0
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4,112,116	-				+0.9
4,112,123	+				+2.2
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4,112,123	+				-0.7
4,112,123	+				-1.5
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4,112,124	-				+0.1
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4,112,156	+				+0.4
4,112,156	+				-0.9
4,112,156	+				-1.5
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