Strain Fitness in Escherichia fergusonii Becca around EFB2_03714

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,885,956	+		EFB2_03713	0.24	+0.0
3,885,956	+		EFB2_03713	0.24	-1.3
3,885,956	+		EFB2_03713	0.24	+0.6
3,885,956	+		EFB2_03713	0.24	+0.6
3,885,956	+		EFB2_03713	0.24	-1.0
3,885,956	+		EFB2_03713	0.24	+0.6
3,885,956	+		EFB2_03713	0.24	-1.7
3,885,956	+		EFB2_03713	0.24	-1.1
3,885,957	-		EFB2_03713	0.24	-0.5
3,885,957	-		EFB2_03713	0.24	-0.0
3,885,957	-		EFB2_03713	0.24	+0.3
3,885,957	-		EFB2_03713	0.24	-0.2
3,886,063	+		EFB2_03713	0.35	+0.2
3,886,080	-		EFB2_03713	0.37	-1.8
3,886,166	+		EFB2_03713	0.46	-2.1
3,886,166	+		EFB2_03713	0.46	-2.8
3,886,166	+		EFB2_03713	0.46	-1.0
3,886,166	+		EFB2_03713	0.46	-2.0
3,886,167	-		EFB2_03713	0.46	-0.3
3,886,167	-		EFB2_03713	0.46	-0.2
3,886,251	+		EFB2_03713	0.55	-0.9
3,886,251	+		EFB2_03713	0.55	-1.8
3,886,251	+		EFB2_03713	0.55	+1.5
3,886,251	+		EFB2_03713	0.55	-0.1
3,886,252	-		EFB2_03713	0.55	-2.3
3,886,411	+		EFB2_03713	0.71	+0.3
3,886,411	+		EFB2_03713	0.71	-0.5
3,886,412	-		EFB2_03713	0.72	+1.3
3,886,412	-		EFB2_03713	0.72	+2.1
3,886,412	-		EFB2_03713	0.72	-0.8
3,886,500	+		EFB2_03713	0.81	-0.6
3,886,501	-		EFB2_03713	0.81	-0.5
3,886,631	+				+2.7
3,886,632	-				-0.1
3,886,640	+				-0.4
3,886,640	+				+0.1
3,886,641	-				-0.2
3,886,687	-				-2.0
3,886,688	+				+1.5
3,886,688	+				-2.8
3,886,688	+				-0.8
3,886,688	+				+0.5
3,886,688	+				-0.7
3,886,688	+				-0.4
3,886,688	+				-1.3
3,886,688	+				+0.8
3,886,688	+				-0.4
3,886,688	+				+1.9
3,886,688	+				+1.4
3,886,688	+				+0.2
3,886,688	+				-0.4
3,886,688	+				-0.6
3,886,689	-				-2.8
3,886,689	-				+1.2
3,886,689	-				-0.2
3,886,689	-				+0.3
3,886,689	-				-1.0
3,886,689	-				-0.2
3,886,689	-				-0.0
3,886,689	-				-0.3
3,886,689	-				-0.2
3,886,689	-				+0.8
3,886,689	-				-1.5
3,886,689	-				-0.1
3,886,689	-				-2.6
3,886,689	-				+0.3
3,886,689	-				-1.1
3,886,689	-				+1.4
3,886,716	-				-1.4
3,886,744	+				+0.1
3,886,745	-				-2.9
3,886,751	-				-0.1
3,886,760	-				-0.4
3,886,760	-				+0.2
3,886,780	+				+1.0
3,886,780	+				-0.1
3,886,780	+				+1.1
3,886,781	-				+0.3
3,886,843	+				-1.0
3,886,844	-				-2.9
3,886,853	-				+0.4
3,886,874	-				-2.4
3,886,923	+				-1.9
3,886,923	+				-0.2
3,886,923	+				+0.1
3,886,923	+				-1.6
3,886,923	+				-2.5
3,886,924	-				-1.5
3,886,924	-				-2.3
3,887,255	+		EFB2_03714	0.23	+2.9
3,887,260	+		EFB2_03714	0.23	-0.8
3,887,260	+		EFB2_03714	0.23	-0.4
3,887,260	+		EFB2_03714	0.23	-1.9
3,887,260	+		EFB2_03714	0.23	+0.3
3,887,261	-		EFB2_03714	0.23	-1.7
3,887,261	-		EFB2_03714	0.23	+1.0
3,887,261	-		EFB2_03714	0.23	-0.9
3,887,261	-		EFB2_03714	0.23	+0.1
3,887,261	-		EFB2_03714	0.23	-0.3
3,887,261	-		EFB2_03714	0.23	-2.7
3,887,261	-		EFB2_03714	0.23	+1.7
3,887,261	-		EFB2_03714	0.23	-0.7
3,887,261	-		EFB2_03714	0.23	+0.3
3,887,261	-		EFB2_03714	0.23	-2.2
3,887,261	-		EFB2_03714	0.23	+0.1
3,887,261	-		EFB2_03714	0.23	-0.5
3,887,312	+		EFB2_03714	0.27	-0.7
3,887,312	+		EFB2_03714	0.27	+1.3
3,887,312	+		EFB2_03714	0.27	-0.7
3,887,312	+		EFB2_03714	0.27	+0.1
3,887,312	+		EFB2_03714	0.27	+1.8
3,887,312	+		EFB2_03714	0.27	-0.7
3,887,313	-		EFB2_03714	0.27	-0.4
3,887,313	-		EFB2_03714	0.27	+1.2
3,887,313	-		EFB2_03714	0.27	+0.3
3,887,313	-		EFB2_03714	0.27	-1.1
3,887,313	-		EFB2_03714	0.27	+0.0
3,887,314	+		EFB2_03714	0.27	+0.5
3,887,314	+		EFB2_03714	0.27	-0.2
3,887,314	+		EFB2_03714	0.27	+1.0
3,887,314	+		EFB2_03714	0.27	+1.6
3,887,314	+		EFB2_03714	0.27	-0.2
3,887,315	-		EFB2_03714	0.27	+0.2
3,887,315	-		EFB2_03714	0.27	-2.3
3,887,315	-		EFB2_03714	0.27	+0.4
3,887,315	-		EFB2_03714	0.27	+0.9
3,887,437	+		EFB2_03714	0.36	+3.1
3,887,437	+		EFB2_03714	0.36	+1.9
3,887,437	+		EFB2_03714	0.36	+1.7
3,887,471	+		EFB2_03714	0.38	-1.9
3,887,471	+		EFB2_03714	0.38	-1.6
3,887,472	-		EFB2_03714	0.38	-1.8
3,887,472	-		EFB2_03714	0.38	+0.3
3,887,472	-		EFB2_03714	0.38	+0.1
3,887,472	-		EFB2_03714	0.38	-0.6
3,887,472	-		EFB2_03714	0.38	+2.3
3,887,472	-		EFB2_03714	0.38	-1.5
3,887,472	-		EFB2_03714	0.38	-2.9
3,887,472	-		EFB2_03714	0.38	+0.5
3,887,503	+		EFB2_03714	0.40	+3.3
3,887,503	+		EFB2_03714	0.40	-1.2
3,887,503	+		EFB2_03714	0.40	+1.3
3,887,503	+		EFB2_03714	0.40	+1.3
3,887,503	+		EFB2_03714	0.40	+0.1
3,887,504	-		EFB2_03714	0.41	+0.6
3,887,504	-		EFB2_03714	0.41	+0.7
3,887,504	-		EFB2_03714	0.41	+2.2
3,887,504	-		EFB2_03714	0.41	-2.2
3,887,504	-		EFB2_03714	0.41	-0.3
3,887,504	-		EFB2_03714	0.41	-0.8
3,887,554	+		EFB2_03714	0.44	-1.4
3,887,567	+		EFB2_03714	0.45	+0.2
3,887,567	+		EFB2_03714	0.45	-0.7
3,887,568	-		EFB2_03714	0.45	+0.4
3,887,612	+		EFB2_03714	0.48	-0.3
3,887,613	-		EFB2_03714	0.48	+1.5
3,887,639	+		EFB2_03714	0.50	-1.8
3,887,639	+		EFB2_03714	0.50	+2.9
3,887,639	+		EFB2_03714	0.50	+0.8
3,887,639	+		EFB2_03714	0.50	+1.7
3,887,640	-		EFB2_03714	0.50	+2.1
3,887,640	-		EFB2_03714	0.50	-1.8
3,887,640	-		EFB2_03714	0.50	+0.3
3,887,662	-		EFB2_03714	0.52	-0.9
3,887,684	+		EFB2_03714	0.53	+0.8
3,887,807	+		EFB2_03714	0.62	-0.1
3,887,807	+		EFB2_03714	0.62	-0.4
3,887,807	+		EFB2_03714	0.62	+0.6
3,887,807	+		EFB2_03714	0.62	-0.8
3,887,807	+		EFB2_03714	0.62	-1.8
3,887,807	+		EFB2_03714	0.62	-3.0
3,887,807	+		EFB2_03714	0.62	-1.0
3,887,807	+		EFB2_03714	0.62	+1.7
3,887,807	+		EFB2_03714	0.62	-0.1
3,887,807	+		EFB2_03714	0.62	-2.1
3,887,807	+		EFB2_03714	0.62	-0.9
3,887,808	-		EFB2_03714	0.62	+0.9
3,887,808	-		EFB2_03714	0.62	+0.8
3,887,808	-		EFB2_03714	0.62	-1.9
3,887,808	-		EFB2_03714	0.62	-1.0
3,887,808	-		EFB2_03714	0.62	-1.3
3,887,808	-		EFB2_03714	0.62	-0.8
3,887,808	-		EFB2_03714	0.62	+0.2
3,887,809	+		EFB2_03714	0.62	+0.1
3,887,809	+		EFB2_03714	0.62	-0.7
3,887,809	+		EFB2_03714	0.62	-0.3
3,887,809	+		EFB2_03714	0.62	-0.6
3,887,809	+		EFB2_03714	0.62	-1.8
3,887,809	+		EFB2_03714	0.62	+0.4
3,887,810	-		EFB2_03714	0.62	+0.9
3,887,810	-		EFB2_03714	0.62	+0.4
3,887,810	-		EFB2_03714	0.62	-3.1
3,887,810	-		EFB2_03714	0.62	-0.2
3,887,810	-		EFB2_03714	0.62	+0.8
3,887,810	-		EFB2_03714	0.62	+1.4
3,887,810	-		EFB2_03714	0.62	-2.5
3,887,810	-		EFB2_03714	0.62	-1.3
3,887,824	+		EFB2_03714	0.63	+0.8
3,887,824	+		EFB2_03714	0.63	-1.8
3,887,825	-		EFB2_03714	0.63	-0.4
3,887,825	-		EFB2_03714	0.63	+1.9
3,887,825	-		EFB2_03714	0.63	+0.4
3,887,825	-		EFB2_03714	0.63	-1.8
3,887,825	-		EFB2_03714	0.63	-1.8
3,887,849	+		EFB2_03714	0.65	-1.1
3,887,849	+		EFB2_03714	0.65	-1.0
3,887,849	+		EFB2_03714	0.65	+0.1
3,887,849	+		EFB2_03714	0.65	-0.3
3,887,849	+		EFB2_03714	0.65	+1.1
3,887,849	+		EFB2_03714	0.65	+1.9
3,887,849	+		EFB2_03714	0.65	+1.6
3,887,849	+		EFB2_03714	0.65	+0.2
3,887,849	+		EFB2_03714	0.65	+1.6
3,888,087	-		EFB2_03714	0.82	+0.3
3,888,218	+				-2.9
3,888,218	+				+0.7
3,888,218	+				-1.8
3,888,218	+				+0.8
3,888,219	-				+0.0
3,888,219	-				-1.6
3,888,261	+				+0.9
3,888,261	+				+1.7
3,888,261	+				+0.4
3,888,261	+				+1.2
3,888,261	+				+1.9
3,888,261	+				+2.1
3,888,262	-				+0.2
3,888,262	-				-3.6
3,888,262	-				-1.2
3,888,262	-				-2.7
3,888,262	-				-0.8
3,888,262	-				-0.7
3,888,262	-				+2.4
3,888,262	-				+0.3
3,888,262	-				-1.6
3,888,262	-				-2.7
3,888,262	-				-1.5
3,888,262	-				-1.5
3,888,262	-				-2.0
3,888,287	+				+2.5
3,888,309	-				+0.9
3,888,309	-				+1.3
3,888,311	+				+0.9
3,888,311	+				-1.2
3,888,311	+				+0.9
3,888,312	-				-1.5
3,888,312	-				+1.1
3,888,312	-				-0.8
3,888,312	-				-1.0
3,888,312	-				+0.6
3,888,329	+				-2.0
3,888,330	-				-1.1
3,888,370	+				-0.8
3,888,370	+				+0.5
3,888,371	-				+0.4
3,888,455	+				-0.5
3,888,455	+				-2.1
3,888,455	+				+0.3
3,888,455	+				+2.9
3,888,455	+				+2.0
3,888,455	+				-0.1
3,888,455	+				-1.3
3,888,455	+				-1.7
3,888,455	+				+0.3
3,888,455	+				-1.0
3,888,455	+				-0.0
3,888,456	-				-0.1
3,888,456	-				+1.1
3,888,456	-				+1.4
3,888,456	-				+1.2
3,888,456	-				+0.1
3,888,456	-				-0.0
3,888,456	-				-2.9
3,888,456	-				+0.4
3,888,456	-				+1.2
3,888,456	-				+1.0
3,888,489	+				+1.1
3,888,489	+				-1.0
3,888,489	+				-0.8
3,888,489	+				+0.3
3,888,489	+				-0.6
3,888,489	+				-0.2
3,888,489	+				+0.9
3,888,489	+				-0.4
3,888,489	+				-1.2
3,888,489	+				-1.1
3,888,489	+				-1.5
3,888,489	+				+1.5
3,888,490	-				-0.3
3,888,490	-				-1.1
3,888,490	-				-1.1
3,888,490	-				-0.3
3,888,490	-				-0.8
3,888,490	-				-1.2
3,888,658	+		EFB2_03715	0.20	+2.9
3,888,658	+		EFB2_03715	0.20	+0.5
3,888,751	+		EFB2_03715	0.26	+1.9
3,888,751	+		EFB2_03715	0.26	-1.9
3,888,751	+		EFB2_03715	0.26	-0.2
3,888,751	+		EFB2_03715	0.26	+0.2
3,888,752	-		EFB2_03715	0.26	+0.4
3,888,752	-		EFB2_03715	0.26	+0.5
3,888,752	-		EFB2_03715	0.26	-1.5
3,888,784	+		EFB2_03715	0.28	+1.8
3,888,792	+		EFB2_03715	0.29	-1.4
3,888,792	+		EFB2_03715	0.29	+0.3
3,888,792	+		EFB2_03715	0.29	-1.0
3,888,793	-		EFB2_03715	0.29	-3.3
3,888,793	-		EFB2_03715	0.29	+0.3
3,888,793	-		EFB2_03715	0.29	-1.0
3,888,793	-		EFB2_03715	0.29	-1.9
3,888,870	+		EFB2_03715	0.34	+2.1
3,888,870	+		EFB2_03715	0.34	+2.7
3,888,870	+		EFB2_03715	0.34	+0.0
3,888,870	+		EFB2_03715	0.34	-1.8
3,888,871	-		EFB2_03715	0.34	+1.5
3,888,871	-		EFB2_03715	0.34	-0.7
3,888,871	-		EFB2_03715	0.34	+0.2
3,888,871	-		EFB2_03715	0.34	+1.4
3,888,871	-		EFB2_03715	0.34	-2.6
3,888,871	-		EFB2_03715	0.34	+0.6
3,888,871	-		EFB2_03715	0.34	-1.1
3,888,922	+		EFB2_03715	0.37	+1.3
3,888,922	+		EFB2_03715	0.37	+0.4
3,888,928	+		EFB2_03715	0.38	+1.3
3,888,928	+		EFB2_03715	0.38	-0.3
3,888,928	+		EFB2_03715	0.38	+1.2
3,888,928	+		EFB2_03715	0.38	+0.9
3,888,928	+		EFB2_03715	0.38	+2.1
3,888,928	+		EFB2_03715	0.38	-0.9
3,888,928	+		EFB2_03715	0.38	-2.0
3,888,928	+		EFB2_03715	0.38	-1.2
3,888,928	+		EFB2_03715	0.38	-2.0
3,888,928	+		EFB2_03715	0.38	+0.0
3,888,928	+		EFB2_03715	0.38	-1.8
3,888,929	-		EFB2_03715	0.38	-0.4
3,888,929	-		EFB2_03715	0.38	-1.7
3,888,929	-		EFB2_03715	0.38	+0.1
3,888,929	-		EFB2_03715	0.38	+0.9
3,888,929	-		EFB2_03715	0.38	+0.9
3,888,929	-		EFB2_03715	0.38	-1.5
3,888,929	-		EFB2_03715	0.38	-2.8
3,888,929	-		EFB2_03715	0.38	+1.7
3,888,929	-		EFB2_03715	0.38	+1.5
3,888,929	-		EFB2_03715	0.38	-2.8
3,888,929	-		EFB2_03715	0.38	-0.4
3,888,929	-		EFB2_03715	0.38	-3.5
3,889,010	+		EFB2_03715	0.43	-2.5
3,889,010	+		EFB2_03715	0.43	-2.3
3,889,132	+		EFB2_03715	0.51	+1.5
3,889,132	+		EFB2_03715	0.51	+0.5
3,889,132	+		EFB2_03715	0.51	-0.7
3,889,132	+		EFB2_03715	0.51	+0.5
3,889,132	+		EFB2_03715	0.51	-0.6
3,889,132	+		EFB2_03715	0.51	-0.5
3,889,132	+		EFB2_03715	0.51	+0.6
3,889,132	+		EFB2_03715	0.51	+0.2
3,889,132	+		EFB2_03715	0.51	-0.6
3,889,132	+		EFB2_03715	0.51	-1.7
3,889,132	+		EFB2_03715	0.51	+2.0
3,889,132	+		EFB2_03715	0.51	-1.3
3,889,132	+		EFB2_03715	0.51	-2.3
3,889,132	+		EFB2_03715	0.51	+1.3
3,889,132	+		EFB2_03715	0.51	+1.5
3,889,133	-		EFB2_03715	0.51	-2.2
3,889,133	-		EFB2_03715	0.51	+0.9
3,889,133	-		EFB2_03715	0.51	+1.1
3,889,133	-		EFB2_03715	0.51	-0.9
3,889,133	-		EFB2_03715	0.51	-0.1
3,889,133	-		EFB2_03715	0.51	+1.2
3,889,133	-		EFB2_03715	0.51	+1.4
3,889,133	-		EFB2_03715	0.51	+0.9
3,889,133	-		EFB2_03715	0.51	-1.7
3,889,133	-		EFB2_03715	0.51	+0.3
3,889,133	-		EFB2_03715	0.51	-1.2
3,889,133	-		EFB2_03715	0.51	-0.8
3,889,315	+		EFB2_03715	0.63	-2.6
3,889,315	+		EFB2_03715	0.63	-0.2