Strain Fitness in Escherichia fergusonii Becca around EFB2_03707

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,878,263	+		EFB2_03706	0.16	+1.3
3,878,263	+		EFB2_03706	0.16	-1.6
3,878,263	+		EFB2_03706	0.16	-2.5
3,878,263	+		EFB2_03706	0.16	+0.5
3,878,263	+		EFB2_03706	0.16	+0.3
3,878,263	+		EFB2_03706	0.16	+0.1
3,878,263	+		EFB2_03706	0.16	-2.1
3,878,263	+		EFB2_03706	0.16	+2.3
3,878,263	+		EFB2_03706	0.16	+1.9
3,878,263	+		EFB2_03706	0.16	-2.8
3,878,263	+		EFB2_03706	0.16	-0.1
3,878,263	+		EFB2_03706	0.16	+0.1
3,878,264	-		EFB2_03706	0.16	-0.3
3,878,264	-		EFB2_03706	0.16	+0.1
3,878,264	-		EFB2_03706	0.16	-2.3
3,878,264	-		EFB2_03706	0.16	-1.8
3,878,264	-		EFB2_03706	0.16	+0.3
3,878,264	-		EFB2_03706	0.16	+0.4
3,878,264	-		EFB2_03706	0.16	-1.4
3,878,340	+		EFB2_03706	0.24	-2.5
3,878,341	-		EFB2_03706	0.24	+0.7
3,878,341	-		EFB2_03706	0.24	+0.1
3,878,355	-		EFB2_03706	0.26	+3.1
3,878,428	+		EFB2_03706	0.34	+0.4
3,878,428	+		EFB2_03706	0.34	-1.8
3,878,428	+		EFB2_03706	0.34	+1.5
3,878,428	+		EFB2_03706	0.34	+0.6
3,878,428	+		EFB2_03706	0.34	+0.1
3,878,428	+		EFB2_03706	0.34	-0.4
3,878,429	-		EFB2_03706	0.34	+0.5
3,878,429	-		EFB2_03706	0.34	+0.7
3,878,429	-		EFB2_03706	0.34	-0.1
3,878,429	-		EFB2_03706	0.34	-0.7
3,878,429	-		EFB2_03706	0.34	-0.1
3,878,429	-		EFB2_03706	0.34	+0.9
3,878,485	+		EFB2_03706	0.41	-0.0
3,878,485	+		EFB2_03706	0.41	-0.1
3,878,485	+		EFB2_03706	0.41	+0.9
3,878,485	+		EFB2_03706	0.41	-0.7
3,878,485	+		EFB2_03706	0.41	-1.0
3,878,485	+		EFB2_03706	0.41	-2.6
3,878,485	+		EFB2_03706	0.41	+0.9
3,878,485	+		EFB2_03706	0.41	-2.0
3,878,485	+		EFB2_03706	0.41	+0.3
3,878,485	+		EFB2_03706	0.41	-1.8
3,878,485	+		EFB2_03706	0.41	+2.0
3,878,485	+		EFB2_03706	0.41	-1.2
3,878,486	-		EFB2_03706	0.41	+0.9
3,878,486	-		EFB2_03706	0.41	-1.9
3,878,486	-		EFB2_03706	0.41	-0.0
3,878,486	-		EFB2_03706	0.41	+0.2
3,878,486	-		EFB2_03706	0.41	-2.5
3,878,486	-		EFB2_03706	0.41	+1.3
3,878,486	-		EFB2_03706	0.41	+1.9
3,878,486	-		EFB2_03706	0.41	+1.1
3,878,486	-		EFB2_03706	0.41	-0.7
3,878,486	-		EFB2_03706	0.41	+0.5
3,878,486	-		EFB2_03706	0.41	-1.1
3,878,486	-		EFB2_03706	0.41	-1.5
3,878,675	+		EFB2_03706	0.62	-2.6
3,878,675	+		EFB2_03706	0.62	-1.1
3,878,676	-		EFB2_03706	0.62	+0.1
3,878,699	+		EFB2_03706	0.65	-1.1
3,878,699	+		EFB2_03706	0.65	-0.4
3,878,700	-		EFB2_03706	0.65	+0.1
3,878,700	-		EFB2_03706	0.65	+0.6
3,878,718	-		EFB2_03706	0.67	-2.0
3,878,795	+		EFB2_03706	0.75	-1.1
3,878,804	+		EFB2_03706	0.76	+0.6
3,878,804	+		EFB2_03706	0.76	-1.3
3,878,804	+		EFB2_03706	0.76	-0.7
3,878,805	-		EFB2_03706	0.76	-2.0
3,878,805	-		EFB2_03706	0.76	-0.7
3,878,805	-		EFB2_03706	0.76	+0.5
3,878,828	+		EFB2_03706	0.79	-0.2
3,878,829	-		EFB2_03706	0.79	+0.4
3,878,829	-		EFB2_03706	0.79	-2.4
3,878,829	-		EFB2_03706	0.79	+1.3
3,878,887	+		EFB2_03706	0.86	+2.1
3,878,887	+		EFB2_03706	0.86	+1.6
3,878,888	-		EFB2_03706	0.86	-2.6
3,878,888	-		EFB2_03706	0.86	+1.0
3,878,888	-		EFB2_03706	0.86	+0.5
3,878,888	-		EFB2_03706	0.86	+1.2
3,878,993	+				+0.5
3,878,993	+				-1.5
3,879,006	+				-0.1
3,879,006	+				+0.3
3,879,006	+				-0.8
3,879,006	+				-2.0
3,879,007	-				-1.8
3,879,053	-				-0.5
3,879,053	-				+1.5
3,879,120	-				-1.7
3,879,137	-				+0.9
3,879,137	-				-0.7
3,879,147	+				+0.3
3,879,148	-				-0.8
3,879,203	-				+0.3
3,879,236	+				+1.9
3,879,237	-				+0.5
3,879,237	-				+2.9
3,879,237	-				-0.5
3,879,302	+				+0.1
3,879,302	+				+0.5
3,879,303	-				+0.0
3,879,309	-				-1.8
3,879,309	-				-0.9
3,879,375	+				-0.6
3,879,375	+				-0.9
3,879,376	-				-0.5
3,879,376	-				-0.3
3,879,406	+				-0.4
3,879,406	+				-1.2
3,879,406	+				-2.2
3,879,406	+				-0.8
3,879,406	+				+0.6
3,879,406	+				+0.3
3,879,406	+				+0.2
3,879,406	+				-1.0
3,879,407	-				-0.8
3,879,407	-				-2.9
3,879,407	-				+1.6
3,879,407	-				-0.1
3,879,407	-				-1.2
3,879,407	-				-0.0
3,879,407	-				+0.9
3,879,407	-				+0.1
3,879,407	-				-0.9
3,879,407	-				-3.3
3,879,462	+		EFB2_03707	0.13	+1.0
3,879,472	+		EFB2_03707	0.14	+0.2
3,879,473	-		EFB2_03707	0.14	+0.2
3,879,473	-		EFB2_03707	0.14	-1.9
3,879,510	-		EFB2_03707	0.16	+0.0
3,879,510	-		EFB2_03707	0.16	+1.0
3,879,523	+		EFB2_03707	0.17	-1.3
3,879,523	+		EFB2_03707	0.17	+0.1
3,879,523	+		EFB2_03707	0.17	+0.3
3,879,523	+		EFB2_03707	0.17	-0.4
3,879,524	-		EFB2_03707	0.17	-1.1
3,879,533	+		EFB2_03707	0.18	+1.5
3,879,534	-		EFB2_03707	0.18	+2.0
3,879,534	-		EFB2_03707	0.18	-0.9
3,879,586	+		EFB2_03707	0.21	-1.3
3,879,586	+		EFB2_03707	0.21	-0.3
3,879,587	-		EFB2_03707	0.21	-1.3
3,879,587	-		EFB2_03707	0.21	-0.3
3,879,587	-		EFB2_03707	0.21	-1.9
3,879,587	-		EFB2_03707	0.21	-1.0
3,879,611	+		EFB2_03707	0.23	+0.6
3,879,611	+		EFB2_03707	0.23	-0.6
3,879,611	+		EFB2_03707	0.23	-0.5
3,879,651	+		EFB2_03707	0.25	-0.1
3,879,651	+		EFB2_03707	0.25	+2.5
3,879,651	+		EFB2_03707	0.25	-1.2
3,879,651	+		EFB2_03707	0.25	+0.1
3,879,651	+		EFB2_03707	0.25	+0.3
3,879,651	+		EFB2_03707	0.25	+0.3
3,879,651	+		EFB2_03707	0.25	-0.7
3,879,651	+		EFB2_03707	0.25	+1.0
3,879,651	+		EFB2_03707	0.25	-0.5
3,879,651	+		EFB2_03707	0.25	+0.2
3,879,651	+		EFB2_03707	0.25	-0.3
3,879,651	+		EFB2_03707	0.25	+1.6
3,879,651	+		EFB2_03707	0.25	+0.5
3,879,651	+		EFB2_03707	0.25	-3.2
3,879,652	-		EFB2_03707	0.25	-0.8
3,879,652	-		EFB2_03707	0.25	+1.9
3,879,652	-		EFB2_03707	0.25	+0.6
3,879,652	-		EFB2_03707	0.25	-2.2
3,879,652	-		EFB2_03707	0.25	-2.9
3,879,652	-		EFB2_03707	0.25	+2.0
3,879,652	-		EFB2_03707	0.25	-0.6
3,879,652	-		EFB2_03707	0.25	-2.5
3,879,652	-		EFB2_03707	0.25	-2.7
3,879,652	-		EFB2_03707	0.25	-0.8
3,879,652	-		EFB2_03707	0.25	+0.6
3,879,652	-		EFB2_03707	0.25	-1.1
3,879,652	-		EFB2_03707	0.25	-2.7
3,879,655	+		EFB2_03707	0.25	-0.0
3,879,655	+		EFB2_03707	0.25	+1.6
3,879,655	+		EFB2_03707	0.25	-1.2
3,879,655	+		EFB2_03707	0.25	-0.6
3,879,655	+		EFB2_03707	0.25	-1.1
3,879,655	+		EFB2_03707	0.25	+0.3
3,879,655	+		EFB2_03707	0.25	-0.0
3,879,655	+		EFB2_03707	0.25	-2.0
3,879,655	+		EFB2_03707	0.25	-1.3
3,879,655	+		EFB2_03707	0.25	-0.3
3,879,655	+		EFB2_03707	0.25	-1.9
3,879,655	+		EFB2_03707	0.25	+0.1
3,879,655	+		EFB2_03707	0.25	-0.6
3,879,655	+		EFB2_03707	0.25	-0.0
3,879,655	+		EFB2_03707	0.25	+0.1
3,879,655	+		EFB2_03707	0.25	+1.2
3,879,655	+		EFB2_03707	0.25	+2.4
3,879,655	+		EFB2_03707	0.25	-0.5
3,879,655	+		EFB2_03707	0.25	+2.0
3,879,655	+		EFB2_03707	0.25	+0.3
3,879,655	+		EFB2_03707	0.25	+0.1
3,879,655	+		EFB2_03707	0.25	-0.3
3,879,655	+		EFB2_03707	0.25	-2.1
3,879,655	+		EFB2_03707	0.25	-2.4
3,879,655	+		EFB2_03707	0.25	+0.6
3,879,655	+		EFB2_03707	0.25	-2.6
3,879,655	+		EFB2_03707	0.25	+1.1
3,879,655	+		EFB2_03707	0.25	+0.2
3,879,655	+		EFB2_03707	0.25	+1.0
3,879,655	+		EFB2_03707	0.25	-0.8
3,879,655	+		EFB2_03707	0.25	-1.0
3,879,655	+		EFB2_03707	0.25	+3.0
3,879,655	+		EFB2_03707	0.25	-0.8
3,879,655	+		EFB2_03707	0.25	-0.7
3,879,655	+		EFB2_03707	0.25	-1.6
3,879,655	+		EFB2_03707	0.25	-0.2
3,879,655	+		EFB2_03707	0.25	-0.0
3,879,655	+		EFB2_03707	0.25	-0.9
3,879,655	+		EFB2_03707	0.25	+2.3
3,879,655	+		EFB2_03707	0.25	+2.1
3,879,655	+		EFB2_03707	0.25	-2.4
3,879,655	+		EFB2_03707	0.25	-0.0
3,879,655	+		EFB2_03707	0.25	+0.5
3,879,655	+		EFB2_03707	0.25	-0.3
3,879,655	+		EFB2_03707	0.25	+0.3
3,879,655	+		EFB2_03707	0.25	-1.9
3,879,656	-		EFB2_03707	0.25	-2.1
3,879,656	-		EFB2_03707	0.25	+0.8
3,879,656	-		EFB2_03707	0.25	-0.5
3,879,656	-		EFB2_03707	0.25	-1.3
3,879,656	-		EFB2_03707	0.25	-0.2
3,879,656	-		EFB2_03707	0.25	+1.8
3,879,656	-		EFB2_03707	0.25	+3.4
3,879,656	-		EFB2_03707	0.25	-1.1
3,879,656	-		EFB2_03707	0.25	+1.2
3,879,656	-		EFB2_03707	0.25	-0.6
3,879,656	-		EFB2_03707	0.25	+1.9
3,879,656	-		EFB2_03707	0.25	-0.9
3,879,656	-		EFB2_03707	0.25	+0.7
3,879,656	-		EFB2_03707	0.25	+1.5
3,879,656	-		EFB2_03707	0.25	-0.1
3,879,656	-		EFB2_03707	0.25	+1.0
3,879,656	-		EFB2_03707	0.25	+0.3
3,879,656	-		EFB2_03707	0.25	-1.7
3,879,656	-		EFB2_03707	0.25	+0.0
3,879,656	-		EFB2_03707	0.25	-1.2
3,879,656	-		EFB2_03707	0.25	-0.6
3,879,656	-		EFB2_03707	0.25	+1.4
3,879,656	-		EFB2_03707	0.25	-1.8
3,879,656	-		EFB2_03707	0.25	-1.7
3,879,656	-		EFB2_03707	0.25	-0.4
3,879,656	-		EFB2_03707	0.25	-0.6
3,879,656	-		EFB2_03707	0.25	+1.3
3,879,656	-		EFB2_03707	0.25	+0.1
3,879,656	-		EFB2_03707	0.25	+0.5
3,879,656	-		EFB2_03707	0.25	+0.9
3,879,656	-		EFB2_03707	0.25	+1.0
3,879,656	-		EFB2_03707	0.25	+1.4
3,879,656	-		EFB2_03707	0.25	-2.0
3,879,656	-		EFB2_03707	0.25	-2.2
3,879,656	-		EFB2_03707	0.25	+0.9
3,879,656	-		EFB2_03707	0.25	-2.1
3,879,656	-		EFB2_03707	0.25	-2.0
3,879,656	-		EFB2_03707	0.25	+0.6
3,879,656	-		EFB2_03707	0.25	+0.5
3,879,703	-		EFB2_03707	0.28	+0.6
3,879,778	-		EFB2_03707	0.33	-2.1
3,879,778	-		EFB2_03707	0.33	-2.5
3,879,781	+		EFB2_03707	0.33	+0.5
3,879,781	+		EFB2_03707	0.33	-1.9
3,879,797	+		EFB2_03707	0.34	-0.8
3,879,797	+		EFB2_03707	0.34	+1.3
3,879,825	+		EFB2_03707	0.36	+2.1
3,879,826	-		EFB2_03707	0.36	-1.1
3,879,826	-		EFB2_03707	0.36	+0.9
3,879,826	-		EFB2_03707	0.36	+0.8
3,879,850	-		EFB2_03707	0.38	-1.2
3,879,882	+		EFB2_03707	0.40	-0.1
3,879,882	+		EFB2_03707	0.40	-0.0
3,879,889	+		EFB2_03707	0.40	-0.5
3,879,890	-		EFB2_03707	0.40	+0.4
3,879,903	+		EFB2_03707	0.41	+2.1
3,879,903	+		EFB2_03707	0.41	-3.3
3,879,945	+		EFB2_03707	0.44	+1.1
3,879,945	+		EFB2_03707	0.44	-0.4
3,879,946	-		EFB2_03707	0.44	+1.2
3,879,946	-		EFB2_03707	0.44	+0.6
3,879,946	-		EFB2_03707	0.44	+1.1
3,879,946	-		EFB2_03707	0.44	+0.7
3,879,955	+		EFB2_03707	0.44	+1.7
3,879,955	+		EFB2_03707	0.44	-1.1
3,879,955	+		EFB2_03707	0.44	-0.1
3,879,955	+		EFB2_03707	0.44	+1.0
3,879,955	+		EFB2_03707	0.44	-0.0
3,879,955	+		EFB2_03707	0.44	-1.1
3,879,956	-		EFB2_03707	0.44	+0.4
3,879,956	-		EFB2_03707	0.44	+0.3
3,879,956	-		EFB2_03707	0.44	+1.9
3,879,956	-		EFB2_03707	0.44	-0.6
3,879,956	-		EFB2_03707	0.44	-0.3
3,880,039	+		EFB2_03707	0.50	-0.8
3,880,039	+		EFB2_03707	0.50	-2.8
3,880,144	+		EFB2_03707	0.56	+0.7
3,880,145	-		EFB2_03707	0.56	-0.6
3,880,250	+		EFB2_03707	0.63	-1.9
3,880,251	-		EFB2_03707	0.63	+1.0
3,880,271	+		EFB2_03707	0.64	-1.1
3,880,328	+		EFB2_03707	0.68	-0.0
3,880,328	+		EFB2_03707	0.68	-1.4
3,880,374	+		EFB2_03707	0.71	+0.4
3,880,374	+		EFB2_03707	0.71	-2.0
3,880,374	+		EFB2_03707	0.71	-0.1
3,880,374	+		EFB2_03707	0.71	-1.1
3,880,374	+		EFB2_03707	0.71	-0.7
3,880,374	+		EFB2_03707	0.71	-0.8
3,880,375	-		EFB2_03707	0.71	-0.7
3,880,375	-		EFB2_03707	0.71	+1.7
3,880,375	-		EFB2_03707	0.71	+0.5
3,880,409	-		EFB2_03707	0.73	+2.4
3,880,420	-		EFB2_03707	0.74	+0.3
3,880,424	+		EFB2_03707	0.74	-2.3
3,880,424	+		EFB2_03707	0.74	-2.1
3,880,424	+		EFB2_03707	0.74	-0.6
3,880,424	+		EFB2_03707	0.74	+1.5
3,880,424	+		EFB2_03707	0.74	+1.1
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3,881,737	+		EFB2_03709	0.53	+1.2
3,881,737	+		EFB2_03709	0.53	-0.7
3,881,737	+		EFB2_03709	0.53	+2.0
3,881,738	-		EFB2_03709	0.53	-0.2
3,881,738	-		EFB2_03709	0.53	-1.0
3,881,738	-		EFB2_03709	0.53	+1.5
3,881,738	-		EFB2_03709	0.53	-1.4
3,881,738	-		EFB2_03709	0.53	+0.5
3,881,738	-		EFB2_03709	0.53	-2.3
3,881,738	-		EFB2_03709	0.53	+2.6
3,881,738	-		EFB2_03709	0.53	-0.0
3,881,759	+		EFB2_03709	0.56	+0.8
3,881,760	-		EFB2_03709	0.56	+0.3
3,881,760	-		EFB2_03709	0.56	+2.3
3,881,764	-		EFB2_03709	0.57	-2.1
3,881,799	+		EFB2_03709	0.63	+0.5
3,881,805	+		EFB2_03709	0.64	-1.9
3,881,806	-		EFB2_03709	0.64	+0.5
3,881,816	+		EFB2_03709	0.65	-2.3
3,881,822	+		EFB2_03709	0.66	+0.4
3,881,822	+		EFB2_03709	0.66	+0.7
3,881,822	+		EFB2_03709	0.66	+0.3
3,881,822	+		EFB2_03709	0.66	-1.2
3,881,822	+		EFB2_03709	0.66	-2.3
3,881,822	+		EFB2_03709	0.66	-0.3
3,881,823	-		EFB2_03709	0.66	+1.7
3,881,823	-		EFB2_03709	0.66	-0.1
3,881,823	-		EFB2_03709	0.66	+0.9
3,881,823	-		EFB2_03709	0.66	-0.3
3,881,823	-		EFB2_03709	0.66	+1.5
3,881,823	-		EFB2_03709	0.66	-0.4
3,881,823	-		EFB2_03709	0.66	+0.4
3,881,823	-		EFB2_03709	0.66	+1.2
3,881,823	-		EFB2_03709	0.66	+0.3