Strain Fitness in Escherichia fergusonii Becca around EFB2_03693

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,859,853	+				-3.0
3,859,854	-				+0.5
3,859,992	+		EFB2_03692	0.15	+0.1
3,860,002	+		EFB2_03692	0.17	-1.5
3,860,003	-		EFB2_03692	0.17	+1.9
3,860,003	-		EFB2_03692	0.17	+0.6
3,860,003	-		EFB2_03692	0.17	-0.4
3,860,047	-		EFB2_03692	0.22	+0.2
3,860,262	+		EFB2_03692	0.50	-0.7
3,860,262	+		EFB2_03692	0.50	-1.5
3,860,262	+		EFB2_03692	0.50	+0.3
3,860,262	+		EFB2_03692	0.50	-2.0
3,860,262	+		EFB2_03692	0.50	-0.5
3,860,262	+		EFB2_03692	0.50	+1.4
3,860,262	+		EFB2_03692	0.50	-0.7
3,860,262	+		EFB2_03692	0.50	+2.1
3,860,262	+		EFB2_03692	0.50	+0.4
3,860,266	+		EFB2_03692	0.51	+0.8
3,860,266	+		EFB2_03692	0.51	+0.1
3,860,266	+		EFB2_03692	0.51	-0.3
3,860,266	+		EFB2_03692	0.51	+0.2
3,860,306	+		EFB2_03692	0.56	-3.5
3,860,306	+		EFB2_03692	0.56	+2.3
3,860,306	+		EFB2_03692	0.56	+0.9
3,860,306	+		EFB2_03692	0.56	-2.1
3,860,306	+		EFB2_03692	0.56	-0.9
3,860,306	+		EFB2_03692	0.56	-0.5
3,860,306	+		EFB2_03692	0.56	-1.2
3,860,306	+		EFB2_03692	0.56	+2.9
3,860,306	+		EFB2_03692	0.56	-2.2
3,860,306	+		EFB2_03692	0.56	-0.3
3,860,307	-		EFB2_03692	0.56	-2.6
3,860,307	-		EFB2_03692	0.56	+0.6
3,860,307	-		EFB2_03692	0.56	+0.9
3,860,307	-		EFB2_03692	0.56	-0.8
3,860,314	+		EFB2_03692	0.57	-0.3
3,860,314	+		EFB2_03692	0.57	+0.6
3,860,314	+		EFB2_03692	0.57	-0.1
3,860,314	+		EFB2_03692	0.57	-1.2
3,860,314	+		EFB2_03692	0.57	+1.3
3,860,314	+		EFB2_03692	0.57	+1.8
3,860,314	+		EFB2_03692	0.57	-1.4
3,860,314	+		EFB2_03692	0.57	+1.5
3,860,315	-		EFB2_03692	0.57	-1.0
3,860,315	-		EFB2_03692	0.57	+0.4
3,860,315	-		EFB2_03692	0.57	-2.9
3,860,315	-		EFB2_03692	0.57	-1.2
3,860,315	-		EFB2_03692	0.57	+1.0
3,860,315	-		EFB2_03692	0.57	-0.6
3,860,315	-		EFB2_03692	0.57	-0.8
3,860,315	-		EFB2_03692	0.57	-2.1
3,860,315	-		EFB2_03692	0.57	+3.2
3,860,316	+		EFB2_03692	0.57	+3.9
3,860,316	+		EFB2_03692	0.57	-0.8
3,860,316	+		EFB2_03692	0.57	+3.1
3,860,316	+		EFB2_03692	0.57	+0.6
3,860,317	-		EFB2_03692	0.57	-2.3
3,860,317	-		EFB2_03692	0.57	-0.9
3,860,338	+		EFB2_03692	0.60	-0.9
3,860,338	+		EFB2_03692	0.60	+1.1
3,860,338	+		EFB2_03692	0.60	+0.6
3,860,339	-		EFB2_03692	0.60	-1.5
3,860,339	-		EFB2_03692	0.60	+0.7
3,860,344	+		EFB2_03692	0.61	+0.7
3,860,344	+		EFB2_03692	0.61	+1.2
3,860,344	+		EFB2_03692	0.61	-1.6
3,860,344	+		EFB2_03692	0.61	-2.7
3,860,345	-		EFB2_03692	0.61	+0.0
3,860,346	+		EFB2_03692	0.61	+1.7
3,860,346	+		EFB2_03692	0.61	-0.0
3,860,353	+		EFB2_03692	0.62	-0.2
3,860,353	+		EFB2_03692	0.62	-0.2
3,860,354	-		EFB2_03692	0.62	-0.5
3,860,354	-		EFB2_03692	0.62	-1.6
3,860,354	-		EFB2_03692	0.62	+1.1
3,860,376	+		EFB2_03692	0.65	+1.0
3,860,376	+		EFB2_03692	0.65	+1.8
3,860,376	+		EFB2_03692	0.65	-0.2
3,860,376	+		EFB2_03692	0.65	-1.8
3,860,376	+		EFB2_03692	0.65	-2.6
3,860,376	+		EFB2_03692	0.65	+1.9
3,860,376	+		EFB2_03692	0.65	-0.4
3,860,377	-		EFB2_03692	0.65	-1.7
3,860,377	-		EFB2_03692	0.65	-1.8
3,860,377	-		EFB2_03692	0.65	-1.5
3,860,377	-		EFB2_03692	0.65	+2.2
3,860,377	-		EFB2_03692	0.65	-1.5
3,860,377	-		EFB2_03692	0.65	+1.1
3,860,377	-		EFB2_03692	0.65	-1.5
3,860,377	-		EFB2_03692	0.65	+0.1
3,860,377	-		EFB2_03692	0.65	+0.2
3,860,377	-		EFB2_03692	0.65	+0.3
3,860,380	+		EFB2_03692	0.66	+0.4
3,860,380	+		EFB2_03692	0.66	-1.9
3,860,381	-		EFB2_03692	0.66	-1.1
3,860,388	+		EFB2_03692	0.67	+0.4
3,860,388	+		EFB2_03692	0.67	+1.6
3,860,388	+		EFB2_03692	0.67	+0.9
3,860,388	+		EFB2_03692	0.67	+1.1
3,860,388	+		EFB2_03692	0.67	+0.4
3,860,388	+		EFB2_03692	0.67	-1.0
3,860,388	+		EFB2_03692	0.67	+0.5
3,860,388	+		EFB2_03692	0.67	-3.6
3,860,389	-		EFB2_03692	0.67	-0.1
3,860,389	-		EFB2_03692	0.67	-1.4
3,860,389	-		EFB2_03692	0.67	+0.5
3,860,389	-		EFB2_03692	0.67	+0.1
3,860,428	+		EFB2_03692	0.72	-0.5
3,860,428	+		EFB2_03692	0.72	-1.5
3,860,428	+		EFB2_03692	0.72	-0.3
3,860,428	+		EFB2_03692	0.72	+2.9
3,860,429	-		EFB2_03692	0.72	-0.0
3,860,429	-		EFB2_03692	0.72	+2.1
3,860,438	+		EFB2_03692	0.73	-0.6
3,860,438	+		EFB2_03692	0.73	-2.0
3,860,438	+		EFB2_03692	0.73	+1.3
3,860,438	+		EFB2_03692	0.73	-2.4
3,860,438	+		EFB2_03692	0.73	-0.0
3,860,438	+		EFB2_03692	0.73	+0.9
3,860,438	+		EFB2_03692	0.73	-1.5
3,860,438	+		EFB2_03692	0.73	+0.3
3,860,438	+		EFB2_03692	0.73	+1.7
3,860,438	+		EFB2_03692	0.73	+1.6
3,860,438	+		EFB2_03692	0.73	-0.4
3,860,438	+		EFB2_03692	0.73	+0.6
3,860,438	+		EFB2_03692	0.73	-4.4
3,860,438	+		EFB2_03692	0.73	-1.7
3,860,438	+		EFB2_03692	0.73	-2.5
3,860,438	+		EFB2_03692	0.73	-3.2
3,860,438	+		EFB2_03692	0.73	+0.3
3,860,438	+		EFB2_03692	0.73	+0.9
3,860,439	-		EFB2_03692	0.73	+1.4
3,860,439	-		EFB2_03692	0.73	+0.8
3,860,439	-		EFB2_03692	0.73	-0.1
3,860,439	-		EFB2_03692	0.73	-0.7
3,860,439	-		EFB2_03692	0.73	+1.0
3,860,439	-		EFB2_03692	0.73	-1.5
3,860,439	-		EFB2_03692	0.73	-1.0
3,860,439	-		EFB2_03692	0.73	+0.7
3,860,439	-		EFB2_03692	0.73	+1.1
3,860,439	-		EFB2_03692	0.73	+1.1
3,860,439	-		EFB2_03692	0.73	+0.7
3,860,439	-		EFB2_03692	0.73	-0.0
3,860,465	-		EFB2_03692	0.76	+1.7
3,860,465	-		EFB2_03692	0.76	+0.2
3,860,465	-		EFB2_03692	0.76	-1.2
3,860,465	-		EFB2_03692	0.76	+0.1
3,860,465	-		EFB2_03692	0.76	+0.2
3,860,465	-		EFB2_03692	0.76	+2.5
3,860,465	-		EFB2_03692	0.76	+0.5
3,860,465	-		EFB2_03692	0.76	-0.7
3,860,465	-		EFB2_03692	0.76	+0.2
3,860,465	-		EFB2_03692	0.76	-1.6
3,860,465	-		EFB2_03692	0.76	-0.3
3,860,465	-		EFB2_03692	0.76	-2.3
3,860,465	-		EFB2_03692	0.76	-0.7
3,860,465	-		EFB2_03692	0.76	-0.9
3,860,465	-		EFB2_03692	0.76	+1.2
3,860,465	-		EFB2_03692	0.76	+0.9
3,860,465	-		EFB2_03692	0.76	+0.7
3,860,465	-		EFB2_03692	0.76	-1.0
3,860,465	-		EFB2_03692	0.76	-0.8
3,860,465	-		EFB2_03692	0.76	-0.3
3,860,550	+		EFB2_03692	0.87	+3.0
3,860,550	+		EFB2_03692	0.87	-0.3
3,860,550	+		EFB2_03692	0.87	-0.9
3,860,550	+		EFB2_03692	0.87	-0.7
3,860,550	+		EFB2_03692	0.87	-0.2
3,860,550	+		EFB2_03692	0.87	-1.1
3,860,571	+				+2.0
3,860,571	+				+1.0
3,860,571	+				-0.5
3,860,571	+				+0.5
3,860,571	+				-1.2
3,860,571	+				+1.4
3,860,571	+				+0.1
3,860,603	-				-0.8
3,860,603	-				-0.6
3,860,603	-				+2.2
3,860,603	-				-0.2
3,860,603	-				+0.9
3,860,603	-				-1.3
3,860,603	-				+2.4
3,860,604	+				-2.7
3,860,604	+				-1.2
3,860,604	+				+0.7
3,860,604	+				+0.4
3,860,604	+				+0.2
3,860,605	-				+0.2
3,860,605	-				+0.9
3,860,605	-				-0.1
3,860,736	-				-1.3
3,860,743	-				-0.2
3,860,756	-				-0.4
3,860,756	-				+0.6
3,860,756	-				-1.7
3,860,757	+				-0.9
3,860,757	+				+0.3
3,860,757	+				+0.3
3,860,757	+				+1.9
3,860,757	+				+0.1
3,860,758	-				+1.2
3,860,758	-				-0.7
3,860,758	-				-2.6
3,860,758	-				-1.7
3,860,758	-				-0.6
3,860,758	-				+0.2
3,860,758	-				-0.9
3,860,758	-				+0.6
3,860,758	-				+1.0
3,860,758	-				-1.8
3,860,758	-				-1.0
3,860,758	-				+0.7
3,860,758	-				-0.7
3,860,758	-				+0.1
3,860,758	-				+0.3
3,860,758	-				+0.3
3,860,759	+				-1.2
3,860,759	+				-0.6
3,860,759	+				+0.1
3,860,759	+				-1.4
3,860,759	+				-0.6
3,860,760	-				+2.0
3,860,760	-				-2.0
3,860,760	-				+0.1
3,860,760	-				-0.5
3,860,760	-				-0.7
3,860,760	-				+0.7
3,860,760	-				+2.2
3,860,760	-				-1.9
3,860,762	+				-1.2
3,860,762	+				-1.7
3,860,762	+				-2.4
3,860,762	+				+1.0
3,860,763	-				-0.6
3,860,763	-				-0.3
3,860,763	-				+0.3
3,860,763	-				-0.7
3,860,763	-				-0.7
3,860,765	-				-3.3
3,860,786	+				+1.7
3,860,787	-				-1.1
3,860,791	+				-1.0
3,860,801	+				+1.3
3,860,802	-				-1.1
3,860,805	-				-1.2
3,860,807	-				-0.6
3,860,841	+				-0.3
3,860,841	+				-1.1
3,860,842	-				+1.1
3,860,842	-				-1.9
3,860,842	-				-1.7
3,860,869	-		EFB2_03693	0.13	+1.4
3,860,883	+		EFB2_03693	0.18	+0.5
3,860,884	-		EFB2_03693	0.18	+2.9
3,860,945	+		EFB2_03693	0.41	-2.2
3,861,043	+		EFB2_03693	0.76	+0.9
3,861,079	-		EFB2_03693	0.89	+0.9
3,861,102	+				-0.2
3,861,102	+				+0.1
3,861,119	+				-0.8
3,861,124	+				+1.6
3,861,125	-				+0.1
3,861,238	+				+2.4
3,861,238	+				-0.0
3,861,238	+				-2.7
3,861,238	+				-1.6
3,861,238	+				+0.8
3,861,239	-				-0.6
3,861,239	-				-2.0
3,861,239	-				-1.1
3,861,239	-				-3.7
3,861,239	-				-1.8
3,861,266	-		EFB2_03694	0.11	-0.5
3,861,277	+		EFB2_03694	0.12	-0.7
3,861,277	+		EFB2_03694	0.12	-1.6
3,861,277	+		EFB2_03694	0.12	+0.3
3,861,277	+		EFB2_03694	0.12	-2.6
3,861,277	+		EFB2_03694	0.12	+0.6
3,861,277	+		EFB2_03694	0.12	+0.6
3,861,277	+		EFB2_03694	0.12	-2.9
3,861,277	+		EFB2_03694	0.12	+1.0
3,861,277	+		EFB2_03694	0.12	-1.2
3,861,278	-		EFB2_03694	0.12	+1.1
3,861,278	-		EFB2_03694	0.12	+0.3
3,861,278	-		EFB2_03694	0.12	+0.4
3,861,278	-		EFB2_03694	0.12	+1.1
3,861,278	-		EFB2_03694	0.12	+0.1
3,861,278	-		EFB2_03694	0.12	+0.1
3,861,278	-		EFB2_03694	0.12	+0.5
3,861,278	-		EFB2_03694	0.12	+1.3
3,861,278	-		EFB2_03694	0.12	+1.7
3,861,345	+		EFB2_03694	0.18	-1.0
3,861,345	+		EFB2_03694	0.18	+0.5
3,861,345	+		EFB2_03694	0.18	+0.7
3,861,345	+		EFB2_03694	0.18	+0.2
3,861,345	+		EFB2_03694	0.18	+1.5
3,861,345	+		EFB2_03694	0.18	-2.4
3,861,345	+		EFB2_03694	0.18	+0.9
3,861,345	+		EFB2_03694	0.18	-0.4
3,861,345	+		EFB2_03694	0.18	+1.1
3,861,345	+		EFB2_03694	0.18	-0.1
3,861,346	-		EFB2_03694	0.18	-0.3
3,861,346	-		EFB2_03694	0.18	-1.4
3,861,346	-		EFB2_03694	0.18	-0.9
3,861,346	-		EFB2_03694	0.18	+0.6
3,861,346	-		EFB2_03694	0.18	+1.5
3,861,346	-		EFB2_03694	0.18	+1.4
3,861,346	-		EFB2_03694	0.18	-0.0
3,861,404	+		EFB2_03694	0.24	+0.9
3,861,404	+		EFB2_03694	0.24	-0.3
3,861,404	+		EFB2_03694	0.24	+3.2
3,861,405	-		EFB2_03694	0.24	-2.1
3,861,405	-		EFB2_03694	0.24	-2.0
3,861,405	-		EFB2_03694	0.24	+1.9
3,861,405	-		EFB2_03694	0.24	-0.6
3,861,451	+		EFB2_03694	0.28	-1.2
3,861,451	+		EFB2_03694	0.28	+0.9
3,861,451	+		EFB2_03694	0.28	+2.0
3,861,451	+		EFB2_03694	0.28	+0.2
3,861,521	+		EFB2_03694	0.34	+1.3
3,861,539	+		EFB2_03694	0.36	+1.9
3,861,540	-		EFB2_03694	0.36	+0.6
3,861,540	-		EFB2_03694	0.36	-1.6
3,861,545	+		EFB2_03694	0.36	+0.9
3,861,545	+		EFB2_03694	0.36	-1.0
3,861,545	+		EFB2_03694	0.36	+1.3
3,861,545	+		EFB2_03694	0.36	-4.1
3,861,545	+		EFB2_03694	0.36	+1.2
3,861,546	-		EFB2_03694	0.36	+0.1
3,861,546	-		EFB2_03694	0.36	+1.5
3,861,546	-		EFB2_03694	0.36	-1.2
3,861,546	-		EFB2_03694	0.36	-2.5
3,861,546	-		EFB2_03694	0.36	-0.1
3,861,546	-		EFB2_03694	0.36	-1.7
3,861,546	-		EFB2_03694	0.36	-1.1
3,861,546	-		EFB2_03694	0.36	+2.1
3,861,546	-		EFB2_03694	0.36	+0.1
3,861,572	+		EFB2_03694	0.39	+1.5
3,861,572	+		EFB2_03694	0.39	-2.5
3,861,572	+		EFB2_03694	0.39	-0.4
3,861,572	+		EFB2_03694	0.39	+0.8
3,861,572	+		EFB2_03694	0.39	-0.6
3,861,572	+		EFB2_03694	0.39	+1.2
3,861,572	+		EFB2_03694	0.39	-0.6
3,861,572	+		EFB2_03694	0.39	+1.5
3,861,572	+		EFB2_03694	0.39	+0.1
3,861,572	+		EFB2_03694	0.39	+1.1
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3,861,573	-		EFB2_03694	0.39	+0.2
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3,861,608	-		EFB2_03694	0.42	-0.7
3,861,675	+		EFB2_03694	0.48	+1.1
3,861,688	+		EFB2_03694	0.49	+2.9
3,861,688	+		EFB2_03694	0.49	+0.4
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3,861,689	-		EFB2_03694	0.49	-0.5
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3,861,864	-		EFB2_03694	0.65	-0.2
3,861,864	-		EFB2_03694	0.65	-2.0
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3,861,877	+		EFB2_03694	0.66	+0.5
3,861,877	+		EFB2_03694	0.66	-0.8
3,861,877	+		EFB2_03694	0.66	+1.9
3,861,877	+		EFB2_03694	0.66	-2.3
3,861,877	+		EFB2_03694	0.66	-1.9
3,861,877	+		EFB2_03694	0.66	-0.3
3,861,877	+		EFB2_03694	0.66	+1.8
3,861,877	+		EFB2_03694	0.66	+0.7
3,861,878	-		EFB2_03694	0.66	+0.1
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3,861,920	-		EFB2_03694	0.70	+0.9
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