Strain Fitness in Escherichia fergusonii Becca around EFB2_03529

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,687,142	+		EFB2_03528	0.22	+0.3
3,687,143	-		EFB2_03528	0.22	-1.1
3,687,145	+		EFB2_03528	0.23	+1.1
3,687,158	-		EFB2_03528	0.24	+2.4
3,687,180	+		EFB2_03528	0.26	-1.7
3,687,180	+		EFB2_03528	0.26	+1.0
3,687,180	+		EFB2_03528	0.26	+1.7
3,687,180	+		EFB2_03528	0.26	+0.8
3,687,180	+		EFB2_03528	0.26	+0.5
3,687,180	+		EFB2_03528	0.26	+0.7
3,687,180	+		EFB2_03528	0.26	+0.9
3,687,180	+		EFB2_03528	0.26	+1.4
3,687,180	+		EFB2_03528	0.26	+0.7
3,687,180	+		EFB2_03528	0.26	-0.3
3,687,181	-		EFB2_03528	0.26	+1.6
3,687,181	-		EFB2_03528	0.26	-1.3
3,687,181	-		EFB2_03528	0.26	+0.5
3,687,184	+		EFB2_03528	0.27	-0.5
3,687,184	+		EFB2_03528	0.27	+0.3
3,687,229	+		EFB2_03528	0.31	+0.0
3,687,229	+		EFB2_03528	0.31	-1.0
3,687,229	+		EFB2_03528	0.31	-1.5
3,687,229	+		EFB2_03528	0.31	-2.2
3,687,230	-		EFB2_03528	0.31	+1.0
3,687,230	-		EFB2_03528	0.31	-1.5
3,687,230	-		EFB2_03528	0.31	+0.1
3,687,230	-		EFB2_03528	0.31	-1.0
3,687,286	+		EFB2_03528	0.37	-1.3
3,687,287	-		EFB2_03528	0.37	+0.6
3,687,287	-		EFB2_03528	0.37	-0.3
3,687,287	-		EFB2_03528	0.37	+1.0
3,687,299	-		EFB2_03528	0.39	-2.3
3,687,299	-		EFB2_03528	0.39	+0.3
3,687,312	-		EFB2_03528	0.40	-0.3
3,687,312	-		EFB2_03528	0.40	+0.6
3,687,312	-		EFB2_03528	0.40	+1.1
3,687,312	-		EFB2_03528	0.40	+1.4
3,687,335	-		EFB2_03528	0.42	+2.8
3,687,365	+		EFB2_03528	0.46	-2.4
3,687,365	+		EFB2_03528	0.46	-0.1
3,687,366	-		EFB2_03528	0.46	-0.9
3,687,406	+		EFB2_03528	0.50	-0.4
3,687,406	+		EFB2_03528	0.50	+0.0
3,687,406	+		EFB2_03528	0.50	+0.3
3,687,406	+		EFB2_03528	0.50	-1.1
3,687,407	-		EFB2_03528	0.50	+1.3
3,687,407	-		EFB2_03528	0.50	+0.3
3,687,407	-		EFB2_03528	0.50	+1.6
3,687,407	-		EFB2_03528	0.50	-0.6
3,687,407	-		EFB2_03528	0.50	+0.8
3,687,407	-		EFB2_03528	0.50	+1.1
3,687,412	+		EFB2_03528	0.51	+0.1
3,687,412	+		EFB2_03528	0.51	+1.2
3,687,413	-		EFB2_03528	0.51	+0.3
3,687,413	-		EFB2_03528	0.51	-1.1
3,687,431	+		EFB2_03528	0.53	+0.8
3,687,431	+		EFB2_03528	0.53	-1.0
3,687,431	+		EFB2_03528	0.53	+1.9
3,687,431	+		EFB2_03528	0.53	+0.4
3,687,431	+		EFB2_03528	0.53	-1.1
3,687,431	+		EFB2_03528	0.53	+2.4
3,687,431	+		EFB2_03528	0.53	+0.3
3,687,431	+		EFB2_03528	0.53	+0.5
3,687,431	+		EFB2_03528	0.53	+0.8
3,687,431	+		EFB2_03528	0.53	+1.8
3,687,431	+		EFB2_03528	0.53	+0.6
3,687,431	+		EFB2_03528	0.53	+0.3
3,687,431	+		EFB2_03528	0.53	-2.0
3,687,432	-		EFB2_03528	0.53	-2.2
3,687,432	-		EFB2_03528	0.53	+0.8
3,687,432	-		EFB2_03528	0.53	+1.2
3,687,432	-		EFB2_03528	0.53	-0.5
3,687,432	-		EFB2_03528	0.53	-2.4
3,687,432	-		EFB2_03528	0.53	-3.2
3,687,432	-		EFB2_03528	0.53	+2.4
3,687,432	-		EFB2_03528	0.53	+2.5
3,687,432	-		EFB2_03528	0.53	+1.4
3,687,432	-		EFB2_03528	0.53	+2.8
3,687,432	-		EFB2_03528	0.53	+0.3
3,687,432	-		EFB2_03528	0.53	+0.6
3,687,432	-		EFB2_03528	0.53	-0.6
3,687,433	+		EFB2_03528	0.53	+1.7
3,687,433	+		EFB2_03528	0.53	+0.6
3,687,433	+		EFB2_03528	0.53	+0.6
3,687,433	+		EFB2_03528	0.53	-1.6
3,687,433	+		EFB2_03528	0.53	+0.5
3,687,433	+		EFB2_03528	0.53	-1.0
3,687,434	-		EFB2_03528	0.53	-1.0
3,687,434	-		EFB2_03528	0.53	-0.5
3,687,434	-		EFB2_03528	0.53	-2.0
3,687,434	-		EFB2_03528	0.53	+2.3
3,687,437	+		EFB2_03528	0.53	-0.9
3,687,437	+		EFB2_03528	0.53	-1.0
3,687,437	+		EFB2_03528	0.53	+0.2
3,687,437	+		EFB2_03528	0.53	+0.6
3,687,438	-		EFB2_03528	0.53	-2.0
3,687,438	-		EFB2_03528	0.53	+3.6
3,687,438	-		EFB2_03528	0.53	-2.3
3,687,438	-		EFB2_03528	0.53	+0.2
3,687,438	-		EFB2_03528	0.53	-3.4
3,687,438	-		EFB2_03528	0.53	-1.8
3,687,438	-		EFB2_03528	0.53	-0.4
3,687,438	-		EFB2_03528	0.53	-1.9
3,687,527	+		EFB2_03528	0.63	-0.5
3,687,527	+		EFB2_03528	0.63	+0.3
3,687,527	+		EFB2_03528	0.63	-0.1
3,687,527	+		EFB2_03528	0.63	-0.0
3,687,527	+		EFB2_03528	0.63	+1.2
3,687,527	+		EFB2_03528	0.63	-2.4
3,687,528	-		EFB2_03528	0.63	+1.1
3,687,528	-		EFB2_03528	0.63	-1.8
3,687,528	-		EFB2_03528	0.63	-1.7
3,687,528	-		EFB2_03528	0.63	-3.0
3,687,548	+		EFB2_03528	0.65	-1.5
3,687,570	+		EFB2_03528	0.67	+2.4
3,687,570	+		EFB2_03528	0.67	-1.5
3,687,571	-		EFB2_03528	0.67	-2.3
3,687,571	-		EFB2_03528	0.67	+0.5
3,687,583	+		EFB2_03528	0.68	-2.5
3,687,583	+		EFB2_03528	0.68	+0.0
3,687,583	+		EFB2_03528	0.68	-3.3
3,687,583	+		EFB2_03528	0.68	+0.2
3,687,584	-		EFB2_03528	0.69	-2.1
3,687,626	+		EFB2_03528	0.73	-1.9
3,687,626	+		EFB2_03528	0.73	+0.1
3,687,626	+		EFB2_03528	0.73	-3.1
3,687,627	-		EFB2_03528	0.73	-0.8
3,687,627	-		EFB2_03528	0.73	-1.1
3,687,650	+		EFB2_03528	0.75	-1.1
3,687,650	+		EFB2_03528	0.75	+2.2
3,687,680	+		EFB2_03528	0.79	+0.3
3,687,707	+		EFB2_03528	0.81	+0.2
3,687,707	+		EFB2_03528	0.81	+0.4
3,687,707	+		EFB2_03528	0.81	-1.0
3,687,707	+		EFB2_03528	0.81	-0.9
3,687,707	+		EFB2_03528	0.81	-0.9
3,687,708	-		EFB2_03528	0.82	+0.2
3,687,708	-		EFB2_03528	0.82	+0.8
3,687,711	+		EFB2_03528	0.82	-0.7
3,687,711	+		EFB2_03528	0.82	-0.1
3,687,712	-		EFB2_03528	0.82	-1.2
3,687,775	+		EFB2_03528	0.89	-0.7
3,687,775	+		EFB2_03528	0.89	+1.3
3,687,775	+		EFB2_03528	0.89	+1.4
3,687,775	+		EFB2_03528	0.89	+1.7
3,687,775	+		EFB2_03528	0.89	+1.8
3,687,776	-		EFB2_03528	0.89	-0.6
3,687,776	-		EFB2_03528	0.89	+0.7
3,687,776	-		EFB2_03528	0.89	+0.6
3,687,776	-		EFB2_03528	0.89	+0.0
3,687,785	+		EFB2_03528	0.90	+0.6
3,687,785	+		EFB2_03528	0.90	+1.3
3,687,785	+		EFB2_03528	0.90	+4.8
3,687,785	+		EFB2_03528	0.90	-1.0
3,687,785	+		EFB2_03528	0.90	+1.1
3,687,785	+		EFB2_03528	0.90	-2.1
3,687,786	-		EFB2_03528	0.90	+1.3
3,687,786	-		EFB2_03528	0.90	+1.9
3,687,812	+				-1.1
3,687,813	-				+1.7
3,687,835	-				-0.4
3,687,842	+				-0.2
3,687,842	+				+2.0
3,687,843	-				+1.3
3,687,843	-				+1.2
3,687,845	-				+1.7
3,687,845	-				-0.2
3,687,845	-				-1.8
3,687,845	-				+1.0
3,687,856	+				-1.5
3,687,856	+				-0.7
3,687,857	-				-0.6
3,687,857	-				-0.3
3,687,868	+				-3.2
3,687,868	+				+0.8
3,687,868	+				+0.2
3,687,868	+				-0.3
3,687,869	-				+0.6
3,687,869	-				+1.1
3,687,869	-				-0.2
3,687,869	-				+0.5
3,687,869	-				+0.2
3,687,869	-				-1.5
3,687,869	-				+0.5
3,687,869	-				-1.9
3,687,872	+				+1.7
3,687,872	+				+0.0
3,687,873	-				+1.1
3,687,882	-				-1.1
3,687,890	+				-1.2
3,687,890	+				-0.9
3,687,890	+				+0.1
3,687,890	+				+1.0
3,687,890	+				-2.2
3,687,891	-				+1.3
3,687,894	+				+1.6
3,687,895	-				-1.3
3,687,913	+				-2.0
3,687,913	+				-0.2
3,687,913	+				-1.2
3,687,914	-				+0.2
3,687,914	-				-1.6
3,687,914	-				+0.7
3,687,918	+				+0.8
3,687,918	+				+1.1
3,687,918	+				+0.1
3,687,918	+				+0.8
3,687,918	+				-0.4
3,687,918	+				+0.0
3,687,919	-				-1.1
3,687,919	-				-0.6
3,687,919	-				+1.3
3,687,919	-				+1.3
3,687,919	-				-0.7
3,687,919	-				+0.3
3,687,919	-				-1.9
3,687,919	-				+2.1
3,687,919	-				+1.0
3,687,940	-				+1.8
3,687,945	+				-2.7
3,687,946	-				+0.9
3,687,946	-				+0.2
3,687,958	+				+1.8
3,687,968	+				+1.7
3,687,968	+				-2.7
3,687,968	+				+0.0
3,687,968	+				+0.4
3,687,968	+				-2.2
3,687,969	-				-0.5
3,687,969	-				+0.5
3,687,973	+				-1.5
3,687,974	-				-1.0
3,688,000	+				-1.9
3,688,000	+				+2.3
3,688,001	-				+0.5
3,688,001	-				-0.1
3,688,001	-				+1.5
3,688,001	-				-0.2
3,688,028	+				+0.8
3,688,028	+				-0.2
3,688,028	+				+1.0
3,688,028	+				-1.0
3,688,029	-				+2.4
3,688,029	-				-1.4
3,688,029	-				+0.4
3,688,030	+				-1.1
3,688,031	-				+0.1
3,688,031	-				+0.3
3,688,031	-				+0.1
3,688,070	+				+0.0
3,688,070	+				+1.0
3,688,070	+				-0.0
3,688,081	+				+1.6
3,688,083	+				-0.3
3,688,083	+				-0.7
3,688,084	-				+0.0
3,688,084	-				+1.6
3,688,103	+				-0.9
3,688,109	+				-0.8
3,688,109	+				+1.1
3,688,125	+				-2.6
3,688,161	-				+2.7
3,688,171	+				+0.7
3,688,171	+				-0.9
3,688,172	-				+2.3
3,688,172	-				+0.3
3,688,172	-				-0.7
3,688,176	+				+1.5
3,688,176	+				+0.3
3,688,177	-				-0.8
3,688,184	+				+1.6
3,688,184	+				+0.1
3,688,185	-				-0.4
3,688,207	-		EFB2_03529	0.12	+0.8
3,688,234	+		EFB2_03529	0.16	-3.0
3,688,234	+		EFB2_03529	0.16	+0.3
3,688,234	+		EFB2_03529	0.16	-0.6
3,688,235	-		EFB2_03529	0.16	-0.4
3,688,235	-		EFB2_03529	0.16	+0.6
3,688,235	-		EFB2_03529	0.16	+2.0
3,688,272	+		EFB2_03529	0.22	-2.2
3,688,272	+		EFB2_03529	0.22	-0.0
3,688,273	-		EFB2_03529	0.22	-2.5
3,688,276	+		EFB2_03529	0.23	-1.0
3,688,276	+		EFB2_03529	0.23	+1.2
3,688,276	+		EFB2_03529	0.23	-0.0
3,688,276	+		EFB2_03529	0.23	+1.3
3,688,291	+		EFB2_03529	0.25	+0.1
3,688,313	+		EFB2_03529	0.28	+1.6
3,688,313	+		EFB2_03529	0.28	-0.7
3,688,313	+		EFB2_03529	0.28	+1.9
3,688,313	+		EFB2_03529	0.28	-1.6
3,688,313	+		EFB2_03529	0.28	-2.2
3,688,314	-		EFB2_03529	0.28	-1.2
3,688,314	-		EFB2_03529	0.28	+0.9
3,688,314	-		EFB2_03529	0.28	+2.2
3,688,314	-		EFB2_03529	0.28	+0.5
3,688,314	-		EFB2_03529	0.28	+0.7
3,688,314	-		EFB2_03529	0.28	+0.5
3,688,318	+		EFB2_03529	0.29	+0.9
3,688,319	-		EFB2_03529	0.29	-1.9
3,688,326	+		EFB2_03529	0.30	+1.4
3,688,326	+		EFB2_03529	0.30	+0.8
3,688,327	-		EFB2_03529	0.30	-1.5
3,688,336	+		EFB2_03529	0.32	+0.6
3,688,336	+		EFB2_03529	0.32	+2.7
3,688,336	+		EFB2_03529	0.32	-0.7
3,688,337	-		EFB2_03529	0.32	+0.0
3,688,337	-		EFB2_03529	0.32	+0.0
3,688,344	+		EFB2_03529	0.33	-0.3
3,688,345	-		EFB2_03529	0.33	-1.6
3,688,345	-		EFB2_03529	0.33	-1.5
3,688,345	-		EFB2_03529	0.33	-1.2
3,688,346	+		EFB2_03529	0.33	+0.6
3,688,351	-		EFB2_03529	0.34	+0.0
3,688,370	-		EFB2_03529	0.37	+1.3
3,688,370	-		EFB2_03529	0.37	+0.4
3,688,417	+		EFB2_03529	0.44	-1.3
3,688,418	-		EFB2_03529	0.44	-1.5
3,688,458	+		EFB2_03529	0.50	+1.5
3,688,458	+		EFB2_03529	0.50	-0.8
3,688,458	+		EFB2_03529	0.50	+2.4
3,688,458	+		EFB2_03529	0.50	-0.1
3,688,458	+		EFB2_03529	0.50	+0.0
3,688,458	+		EFB2_03529	0.50	+1.0
3,688,459	-		EFB2_03529	0.51	+0.9
3,688,459	-		EFB2_03529	0.51	+0.5
3,688,459	-		EFB2_03529	0.51	+0.3
3,688,459	-		EFB2_03529	0.51	-1.2
3,688,490	+		EFB2_03529	0.55	-2.8
3,688,490	+		EFB2_03529	0.55	+0.0
3,688,490	+		EFB2_03529	0.55	+0.1
3,688,490	+		EFB2_03529	0.55	-1.3
3,688,490	+		EFB2_03529	0.55	-0.3
3,688,491	-		EFB2_03529	0.55	-0.7
3,688,491	-		EFB2_03529	0.55	-2.0
3,688,491	-		EFB2_03529	0.55	+2.0
3,688,491	-		EFB2_03529	0.55	-0.6
3,688,491	-		EFB2_03529	0.55	-1.0
3,688,516	+		EFB2_03529	0.59	-0.7
3,688,516	+		EFB2_03529	0.59	-2.0
3,688,516	+		EFB2_03529	0.59	-0.3
3,688,516	+		EFB2_03529	0.59	+1.1
3,688,516	+		EFB2_03529	0.59	-1.5
3,688,516	+		EFB2_03529	0.59	+1.3
3,688,516	+		EFB2_03529	0.59	+1.0
3,688,516	+		EFB2_03529	0.59	+0.6
3,688,516	+		EFB2_03529	0.59	+1.5
3,688,516	+		EFB2_03529	0.59	-2.2
3,688,516	+		EFB2_03529	0.59	-0.6
3,688,516	+		EFB2_03529	0.59	-1.5
3,688,516	+		EFB2_03529	0.59	+1.0
3,688,517	-		EFB2_03529	0.59	+0.1
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3,689,622	-				-0.7
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3,689,659	+				+0.7
3,689,708	+				-3.2
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3,689,712	+				-0.3
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3,689,777	+				-0.6
3,689,778	-				+0.2
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3,689,778	-				-0.0