Strain Fitness in Escherichia fergusonii Becca around EFB2_03230

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,385,147	-		EFB2_03228	0.30	+1.0
3,385,147	-		EFB2_03228	0.30	-0.1
3,385,278	+		EFB2_03228	0.44	+2.9
3,385,354	+		EFB2_03228	0.53	+1.8
3,385,355	-		EFB2_03228	0.53	+2.9
3,385,355	-		EFB2_03228	0.53	+0.7
3,385,463	+		EFB2_03228	0.65	-1.1
3,385,463	+		EFB2_03228	0.65	+1.3
3,385,464	-		EFB2_03228	0.65	-1.4
3,385,498	+		EFB2_03228	0.68	-1.4
3,385,498	+		EFB2_03228	0.68	+0.9
3,385,498	+		EFB2_03228	0.68	+1.9
3,385,498	+		EFB2_03228	0.68	-0.4
3,385,498	+		EFB2_03228	0.68	-0.1
3,385,498	+		EFB2_03228	0.68	-0.9
3,385,498	+		EFB2_03228	0.68	+0.2
3,385,498	+		EFB2_03228	0.68	-2.0
3,385,498	+		EFB2_03228	0.68	-0.8
3,385,498	+		EFB2_03228	0.68	+1.7
3,385,498	+		EFB2_03228	0.68	+0.6
3,385,498	+		EFB2_03228	0.68	-1.6
3,385,498	+		EFB2_03228	0.68	+1.7
3,385,498	+		EFB2_03228	0.68	-0.1
3,385,498	+		EFB2_03228	0.68	-1.0
3,385,498	+		EFB2_03228	0.68	+2.8
3,385,498	+		EFB2_03228	0.68	-1.2
3,385,498	+		EFB2_03228	0.68	-0.9
3,385,498	+		EFB2_03228	0.68	-1.6
3,385,498	+		EFB2_03228	0.68	+1.5
3,385,498	+		EFB2_03228	0.68	+0.0
3,385,498	+		EFB2_03228	0.68	+0.3
3,385,498	+		EFB2_03228	0.68	+1.2
3,385,499	-		EFB2_03228	0.69	+0.5
3,385,499	-		EFB2_03228	0.69	-0.3
3,385,499	-		EFB2_03228	0.69	+1.5
3,385,499	-		EFB2_03228	0.69	-2.0
3,385,499	-		EFB2_03228	0.69	+1.7
3,385,499	-		EFB2_03228	0.69	-0.4
3,385,499	-		EFB2_03228	0.69	-0.6
3,385,499	-		EFB2_03228	0.69	+1.9
3,385,538	-		EFB2_03228	0.73	-1.6
3,385,597	+		EFB2_03228	0.79	-2.3
3,385,597	+		EFB2_03228	0.79	+0.1
3,385,597	+		EFB2_03228	0.79	+0.9
3,385,827	+		EFB2_03229	0.16	-1.5
3,385,931	+		EFB2_03229	0.44	+0.7
3,385,931	+		EFB2_03229	0.44	-0.1
3,385,931	+		EFB2_03229	0.44	-0.5
3,385,931	+		EFB2_03229	0.44	-0.7
3,385,931	+		EFB2_03229	0.44	-3.0
3,385,931	+		EFB2_03229	0.44	-0.4
3,385,931	+		EFB2_03229	0.44	-0.7
3,385,931	+		EFB2_03229	0.44	-1.4
3,385,931	+		EFB2_03229	0.44	-1.6
3,385,931	+		EFB2_03229	0.44	-0.7
3,385,931	+		EFB2_03229	0.44	+1.1
3,385,931	+		EFB2_03229	0.44	-1.3
3,385,931	+		EFB2_03229	0.44	-2.0
3,385,931	+		EFB2_03229	0.44	+1.4
3,385,957	+		EFB2_03229	0.52	-1.5
3,385,981	+		EFB2_03229	0.58	+0.6
3,385,981	+		EFB2_03229	0.58	+2.0
3,386,022	+		EFB2_03229	0.70	+0.1
3,386,022	+		EFB2_03229	0.70	-0.4
3,386,022	+		EFB2_03229	0.70	-1.4
3,386,079	+		EFB2_03229	0.86	+0.6
3,386,079	+		EFB2_03229	0.86	+0.3
3,386,085	+		EFB2_03229	0.87	+0.3
3,386,103	+				-3.8
3,386,103	+				-0.3
3,386,103	+				-0.7
3,386,118	+				+1.1
3,386,118	+				+1.5
3,386,171	+				+1.9
3,386,171	+				+1.4
3,386,171	+				+2.4
3,386,283	+		EFB2_03230	0.27	-0.1
3,386,283	+		EFB2_03230	0.27	-2.0
3,386,283	+		EFB2_03230	0.27	+0.6
3,386,353	+		EFB2_03230	0.39	-2.4
3,386,353	+		EFB2_03230	0.39	-1.4
3,386,353	+		EFB2_03230	0.39	+0.6
3,386,353	+		EFB2_03230	0.39	-1.1
3,386,353	+		EFB2_03230	0.39	+0.2
3,386,353	+		EFB2_03230	0.39	+1.1
3,386,353	+		EFB2_03230	0.39	+0.7
3,386,353	+		EFB2_03230	0.39	+0.2
3,386,353	+		EFB2_03230	0.39	-1.3
3,386,353	+		EFB2_03230	0.39	-2.3
3,386,353	+		EFB2_03230	0.39	+1.2
3,386,377	+		EFB2_03230	0.43	+1.9
3,386,377	+		EFB2_03230	0.43	+2.3
3,386,377	+		EFB2_03230	0.43	-0.1
3,386,455	+		EFB2_03230	0.57	+0.9
3,386,455	+		EFB2_03230	0.57	-0.6
3,386,455	+		EFB2_03230	0.57	+2.3
3,386,455	+		EFB2_03230	0.57	-1.6
3,386,455	+		EFB2_03230	0.57	-1.8
3,386,489	+		EFB2_03230	0.63	+1.7
3,386,576	+		EFB2_03230	0.78	+1.1
3,386,646	+		EFB2_03230	0.90	-1.0
3,386,646	+		EFB2_03230	0.90	+0.4
3,386,646	+		EFB2_03230	0.90	+1.6
3,386,646	+		EFB2_03230	0.90	-0.5
3,386,646	+		EFB2_03230	0.90	-0.0
3,386,646	+		EFB2_03230	0.90	+1.1
3,386,646	+		EFB2_03230	0.90	-0.1
3,386,646	+		EFB2_03230	0.90	-1.3
3,386,646	+		EFB2_03230	0.90	+1.2
3,386,646	+		EFB2_03230	0.90	-1.7
3,386,646	+		EFB2_03230	0.90	+0.9
3,386,646	+		EFB2_03230	0.90	+0.8
3,386,672	+				-2.5
3,386,673	-				+1.3
3,386,673	-				-0.3
3,386,691	+				-0.7
3,386,692	-				+1.3
3,386,705	+				+0.2
3,386,754	+				+1.8
3,386,755	-				+1.7
3,386,755	-				-0.3
3,386,755	-				+0.9
3,386,755	-				-0.4
3,386,755	-				-0.3
3,386,767	-				-1.8
3,386,832	-		EFB2_03231	0.13	+1.3
3,386,832	-		EFB2_03231	0.13	+1.7
3,386,832	-		EFB2_03231	0.13	+1.3
3,386,901	+		EFB2_03231	0.28	+0.7
3,386,901	+		EFB2_03231	0.28	-0.2
3,386,901	+		EFB2_03231	0.28	+1.3
3,386,901	+		EFB2_03231	0.28	-2.6
3,386,932	+		EFB2_03231	0.35	-0.9
3,386,932	+		EFB2_03231	0.35	-0.1
3,386,932	+		EFB2_03231	0.35	-1.3
3,386,932	+		EFB2_03231	0.35	+1.1
3,386,932	+		EFB2_03231	0.35	-1.2
3,386,932	+		EFB2_03231	0.35	-1.6
3,386,932	+		EFB2_03231	0.35	-1.7
3,386,932	+		EFB2_03231	0.35	-1.0
3,386,933	-		EFB2_03231	0.36	+0.6
3,386,933	-		EFB2_03231	0.36	-0.3
3,386,933	-		EFB2_03231	0.36	-1.1
3,386,933	-		EFB2_03231	0.36	+0.1
3,386,933	-		EFB2_03231	0.36	-1.5
3,386,933	-		EFB2_03231	0.36	-2.6
3,386,933	-		EFB2_03231	0.36	+0.5
3,386,933	-		EFB2_03231	0.36	+1.0
3,386,933	-		EFB2_03231	0.36	-1.6
3,386,982	+		EFB2_03231	0.47	-2.0
3,386,982	+		EFB2_03231	0.47	-1.1
3,386,983	-		EFB2_03231	0.47	+0.9
3,386,983	-		EFB2_03231	0.47	-0.7
3,387,063	+		EFB2_03231	0.65	+1.4
3,387,063	+		EFB2_03231	0.65	+2.1
3,387,063	+		EFB2_03231	0.65	-3.0
3,387,063	+		EFB2_03231	0.65	+0.7
3,387,063	+		EFB2_03231	0.65	+1.7
3,387,063	+		EFB2_03231	0.65	-0.2
3,387,063	+		EFB2_03231	0.65	+0.6
3,387,064	-		EFB2_03231	0.65	-0.7
3,387,064	-		EFB2_03231	0.65	+0.6
3,387,064	-		EFB2_03231	0.65	-1.0
3,387,064	-		EFB2_03231	0.65	-2.1
3,387,064	-		EFB2_03231	0.65	-2.7
3,387,064	-		EFB2_03231	0.65	-2.8
3,387,064	-		EFB2_03231	0.65	+0.1
3,387,064	-		EFB2_03231	0.65	-1.2
3,387,261	+		EFB2_03232	0.11	-2.1
3,387,262	-		EFB2_03232	0.11	+1.3
3,387,262	-		EFB2_03232	0.11	-2.0
3,387,263	+		EFB2_03232	0.12	+0.4
3,387,263	+		EFB2_03232	0.12	-0.1
3,387,264	-		EFB2_03232	0.12	+2.0
3,387,264	-		EFB2_03232	0.12	-0.3
3,387,264	-		EFB2_03232	0.12	+0.6
3,387,264	-		EFB2_03232	0.12	+1.5
3,387,264	-		EFB2_03232	0.12	-1.5
3,387,264	-		EFB2_03232	0.12	-0.4
3,387,285	-		EFB2_03232	0.17	+1.2
3,387,285	-		EFB2_03232	0.17	-0.3
3,387,285	-		EFB2_03232	0.17	-0.8
3,387,335	+		EFB2_03232	0.28	-0.8
3,387,360	-		EFB2_03232	0.34	+1.3
3,387,379	-		EFB2_03232	0.38	+0.3
3,387,379	-		EFB2_03232	0.38	+1.3
3,387,379	-		EFB2_03232	0.38	+1.9
3,387,401	+		EFB2_03232	0.44	-1.3
3,387,503	-		EFB2_03232	0.67	+0.4
3,387,508	+		EFB2_03232	0.68	+2.0
3,387,508	+		EFB2_03232	0.68	+1.5
3,387,509	-		EFB2_03232	0.69	+0.2
3,387,521	+		EFB2_03232	0.71	+1.4
3,387,521	+		EFB2_03232	0.71	+2.9
3,387,521	+		EFB2_03232	0.71	-0.3
3,387,521	+		EFB2_03232	0.71	-0.7
3,387,521	+		EFB2_03232	0.71	-1.3
3,387,521	+		EFB2_03232	0.71	+1.5
3,387,521	+		EFB2_03232	0.71	+0.3
3,387,521	+		EFB2_03232	0.71	-0.4
3,387,521	+		EFB2_03232	0.71	+1.8
3,387,521	+		EFB2_03232	0.71	-0.5
3,387,521	+		EFB2_03232	0.71	-0.6
3,387,522	-		EFB2_03232	0.72	-0.4
3,387,522	-		EFB2_03232	0.72	+0.3
3,387,522	-		EFB2_03232	0.72	+1.0
3,387,522	-		EFB2_03232	0.72	+1.5
3,387,522	-		EFB2_03232	0.72	-0.3
3,387,522	-		EFB2_03232	0.72	-2.2
3,387,522	-		EFB2_03232	0.72	-1.8
3,387,522	-		EFB2_03232	0.72	-1.3
3,387,522	-		EFB2_03232	0.72	+2.7
3,387,522	-		EFB2_03232	0.72	+1.6
3,387,522	-		EFB2_03232	0.72	-0.4
3,387,522	-		EFB2_03232	0.72	+0.4
3,387,584	+		EFB2_03232	0.86	-0.8
3,387,595	+		EFB2_03232	0.88	+0.8
3,387,595	+		EFB2_03232	0.88	+0.5
3,387,595	+		EFB2_03232	0.88	-1.2
3,387,595	+		EFB2_03232	0.88	-0.6
3,387,595	+		EFB2_03232	0.88	+1.3
3,387,595	+		EFB2_03232	0.88	+0.1
3,387,595	+		EFB2_03232	0.88	+0.8
3,387,595	+		EFB2_03232	0.88	+2.9
3,387,595	+		EFB2_03232	0.88	+0.8
3,387,595	+		EFB2_03232	0.88	+2.6
3,387,595	+		EFB2_03232	0.88	-2.0
3,387,595	+		EFB2_03232	0.88	+0.5
3,387,595	+		EFB2_03232	0.88	+1.1
3,387,595	+		EFB2_03232	0.88	-1.6
3,387,595	+		EFB2_03232	0.88	+1.6
3,387,596	-		EFB2_03232	0.89	-0.3
3,387,596	-		EFB2_03232	0.89	-2.7
3,387,596	-		EFB2_03232	0.89	-0.4
3,387,596	-		EFB2_03232	0.89	+2.9
3,387,596	-		EFB2_03232	0.89	-0.8
3,387,596	-		EFB2_03232	0.89	-0.9
3,387,596	-		EFB2_03232	0.89	+0.6
3,387,596	-		EFB2_03232	0.89	-1.0
3,387,596	-		EFB2_03232	0.89	-0.8
3,387,596	-		EFB2_03232	0.89	+1.9
3,387,596	-		EFB2_03232	0.89	-2.7
3,387,596	-		EFB2_03232	0.89	+1.5
3,387,596	-		EFB2_03232	0.89	-1.5
3,387,596	-		EFB2_03232	0.89	+0.2
3,387,596	-		EFB2_03232	0.89	+1.2
3,387,608	+				-1.1
3,387,666	+				-1.4
3,387,666	+				-0.3
3,387,667	-				+0.9
3,387,667	-				-2.5