Strain Fitness in Escherichia fergusonii Becca around EFB2_02865

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,001,981	+		EFB2_02863	0.85	+1.0
3,002,019	+				+3.6
3,002,022	+				+0.6
3,002,022	+				+0.9
3,002,023	-				+0.9
3,002,023	-				+2.0
3,002,031	+				-0.7
3,002,031	+				+1.7
3,002,031	+				-1.9
3,002,120	+				+1.4
3,002,121	-				-0.3
3,002,218	+				+1.7
3,002,219	-				+0.2
3,002,220	+				+3.7
3,002,220	+				-0.3
3,002,220	+				-0.7
3,002,221	-				+3.9
3,002,221	-				+1.2
3,002,223	+				-1.9
3,002,223	+				+0.0
3,002,249	-				+0.7
3,002,249	-				-2.3
3,002,338	-		EFB2_02864	0.12	+1.0
3,002,368	+		EFB2_02864	0.17	+1.1
3,002,368	+		EFB2_02864	0.17	-0.8
3,002,369	-		EFB2_02864	0.17	+0.9
3,002,412	+		EFB2_02864	0.24	+0.3
3,002,426	+		EFB2_02864	0.26	+1.4
3,002,426	+		EFB2_02864	0.26	+1.7
3,002,428	+		EFB2_02864	0.27	+1.6
3,002,440	-		EFB2_02864	0.28	-0.1
3,002,479	+		EFB2_02864	0.35	+0.7
3,002,479	+		EFB2_02864	0.35	+0.4
3,002,479	+		EFB2_02864	0.35	-2.4
3,002,479	+		EFB2_02864	0.35	+1.5
3,002,479	+		EFB2_02864	0.35	-2.0
3,002,479	+		EFB2_02864	0.35	+0.9
3,002,479	+		EFB2_02864	0.35	+1.4
3,002,479	+		EFB2_02864	0.35	+1.4
3,002,479	+		EFB2_02864	0.35	+1.8
3,002,479	+		EFB2_02864	0.35	+0.4
3,002,480	-		EFB2_02864	0.35	-1.1
3,002,481	+		EFB2_02864	0.35	+1.6
3,002,557	+		EFB2_02864	0.47	+1.1
3,002,557	+		EFB2_02864	0.47	+1.7
3,002,558	-		EFB2_02864	0.47	+0.0
3,002,583	+		EFB2_02864	0.51	-0.3
3,002,655	+		EFB2_02864	0.62	-0.0
3,002,664	+		EFB2_02864	0.64	+0.2
3,002,664	+		EFB2_02864	0.64	+1.7
3,002,665	-		EFB2_02864	0.64	+3.0
3,002,714	+		EFB2_02864	0.72	+0.4
3,002,715	-		EFB2_02864	0.72	-0.8
3,002,781	+		EFB2_02864	0.82	-0.7
3,002,781	+		EFB2_02864	0.82	+0.3
3,002,781	+		EFB2_02864	0.82	-2.1
3,002,781	+		EFB2_02864	0.82	-0.8
3,002,787	+		EFB2_02864	0.83	-1.1
3,002,787	+		EFB2_02864	0.83	+0.4
3,002,787	+		EFB2_02864	0.83	+0.3
3,002,787	+		EFB2_02864	0.83	+0.2
3,002,787	+		EFB2_02864	0.83	+0.8
3,002,787	+		EFB2_02864	0.83	-1.2
3,002,787	+		EFB2_02864	0.83	-0.1
3,002,787	+		EFB2_02864	0.83	+0.9
3,002,788	-		EFB2_02864	0.83	+0.4
3,002,790	+		EFB2_02864	0.84	+0.4
3,002,791	-		EFB2_02864	0.84	-1.3
3,002,870	+				-1.4
3,002,890	+				+0.5
3,002,890	+				-0.6
3,002,890	+				+0.4
3,002,890	+				-1.5
3,002,890	+				+1.1
3,002,890	+				+1.1
3,002,890	+				-1.3
3,002,890	+				+0.0
3,002,891	-				+2.0
3,002,891	-				-0.3
3,002,933	-				-0.8
3,002,944	+				-0.6
3,002,944	+				-0.6
3,002,944	+				+1.0
3,002,944	+				-0.4
3,002,944	+				-1.9
3,002,944	+				+1.0
3,002,944	+				+0.0
3,002,944	+				-1.9
3,002,944	+				+0.7
3,002,945	-				+0.4
3,002,945	-				-1.8
3,002,945	-				-1.8
3,002,945	-				+2.0
3,002,945	-				-0.1
3,002,945	-				-1.1
3,002,945	-				+2.0
3,002,945	-				+2.8
3,002,945	-				-1.7
3,002,945	-				+1.0
3,002,945	-				-1.2
3,002,945	-				+2.3
3,002,945	-				+2.7
3,002,955	+				-0.6
3,002,955	+				-0.4
3,002,955	+				-1.4
3,002,955	+				+0.8
3,002,956	-				-0.1
3,002,956	-				+1.0
3,002,956	-				-0.8
3,002,956	-				-0.9
3,002,956	-				-0.9
3,002,956	-				+1.7
3,002,956	-				-0.6
3,002,965	+				-0.8
3,002,990	-				+0.6
3,002,994	-				+1.0
3,002,994	-				+0.3
3,003,055	+		EFB2_02865	0.19	-0.8
3,003,055	+		EFB2_02865	0.19	+1.3
3,003,055	+		EFB2_02865	0.19	+0.3
3,003,055	+		EFB2_02865	0.19	+0.5
3,003,055	+		EFB2_02865	0.19	-2.1
3,003,056	-		EFB2_02865	0.19	-0.1
3,003,056	-		EFB2_02865	0.19	-0.7
3,003,056	-		EFB2_02865	0.19	-0.6
3,003,056	-		EFB2_02865	0.19	+2.0
3,003,057	+		EFB2_02865	0.19	+1.3
3,003,057	+		EFB2_02865	0.19	+0.0
3,003,057	+		EFB2_02865	0.19	+0.7
3,003,057	+		EFB2_02865	0.19	+0.9
3,003,057	+		EFB2_02865	0.19	+0.2
3,003,058	-		EFB2_02865	0.19	-0.7
3,003,058	-		EFB2_02865	0.19	+2.3
3,003,058	-		EFB2_02865	0.19	+2.8
3,003,058	-		EFB2_02865	0.19	-0.7
3,003,058	-		EFB2_02865	0.19	+1.7
3,003,058	-		EFB2_02865	0.19	+2.1
3,003,058	-		EFB2_02865	0.19	+0.7
3,003,058	-		EFB2_02865	0.19	-0.3
3,003,058	-		EFB2_02865	0.19	-1.8
3,003,096	+		EFB2_02865	0.26	+0.1
3,003,096	+		EFB2_02865	0.26	-0.9
3,003,097	-		EFB2_02865	0.26	-0.4
3,003,097	-		EFB2_02865	0.26	-1.4
3,003,097	-		EFB2_02865	0.26	-0.4
3,003,097	-		EFB2_02865	0.26	-0.1
3,003,097	-		EFB2_02865	0.26	+2.0
3,003,107	-		EFB2_02865	0.28	-0.9
3,003,107	-		EFB2_02865	0.28	+0.4
3,003,107	-		EFB2_02865	0.28	+0.7
3,003,122	-		EFB2_02865	0.31	+0.2
3,003,122	-		EFB2_02865	0.31	+0.0
3,003,129	+		EFB2_02865	0.32	+2.0
3,003,129	+		EFB2_02865	0.32	-1.0
3,003,129	+		EFB2_02865	0.32	-2.2
3,003,129	+		EFB2_02865	0.32	-0.3
3,003,129	+		EFB2_02865	0.32	-2.0
3,003,129	+		EFB2_02865	0.32	-0.4
3,003,129	+		EFB2_02865	0.32	-0.3
3,003,129	+		EFB2_02865	0.32	-0.9
3,003,129	+		EFB2_02865	0.32	-0.3
3,003,129	+		EFB2_02865	0.32	+1.3
3,003,129	+		EFB2_02865	0.32	-0.3
3,003,129	+		EFB2_02865	0.32	+1.0
3,003,129	+		EFB2_02865	0.32	+2.0
3,003,130	-		EFB2_02865	0.33	-0.8
3,003,130	-		EFB2_02865	0.33	+0.7
3,003,130	-		EFB2_02865	0.33	-1.9
3,003,130	-		EFB2_02865	0.33	-1.3
3,003,130	-		EFB2_02865	0.33	-0.7
3,003,130	-		EFB2_02865	0.33	-1.3
3,003,133	+		EFB2_02865	0.33	+0.0
3,003,133	+		EFB2_02865	0.33	+1.5
3,003,133	+		EFB2_02865	0.33	-0.4
3,003,134	-		EFB2_02865	0.33	+0.2
3,003,134	-		EFB2_02865	0.33	-1.8
3,003,174	+		EFB2_02865	0.41	+2.4
3,003,174	+		EFB2_02865	0.41	-0.7
3,003,176	+		EFB2_02865	0.41	+1.4
3,003,322	+		EFB2_02865	0.68	+2.2
3,003,322	+		EFB2_02865	0.68	+1.0
3,003,322	+		EFB2_02865	0.68	-1.1
3,003,323	-		EFB2_02865	0.68	+1.4
3,003,323	-		EFB2_02865	0.68	+0.0
3,003,394	-		EFB2_02865	0.81	-0.9
3,003,487	+				+3.0
3,003,487	+				+0.0
3,003,487	+				-1.6
3,003,487	+				+0.4
3,003,487	+				+0.8
3,003,488	-				+4.6
3,003,488	-				-0.1
3,003,488	-				+1.6
3,003,488	-				+3.0
3,003,488	-				-1.1
3,003,499	+				-0.6
3,003,499	+				+1.4
3,003,499	+				-2.3
3,003,499	+				+0.4
3,003,500	-				+0.2
3,003,500	-				+0.0
3,003,500	-				-1.9
3,003,517	+				-0.9
3,003,552	-				-0.8
3,003,590	+				+1.0
3,003,590	+				+0.3
3,003,590	+				+1.1
3,003,590	+				+0.6
3,003,590	+				-1.7
3,003,594	+				-0.8
3,003,594	+				-1.1
3,003,594	+				+0.8
3,003,595	-				-1.1
3,003,646	+				+1.6
3,003,646	+				+0.4
3,003,646	+				+0.0
3,003,647	-				+1.7
3,003,647	-				+0.4
3,003,664	+				+0.7
3,003,664	+				+0.9
3,003,664	+				-1.9
3,003,664	+				+0.0
3,003,694	-				-1.1
3,003,694	-				+0.3
3,003,710	+				-1.1
3,003,710	+				+3.3
3,003,711	-				-2.6
3,003,711	-				+2.7
3,003,711	-				-0.5
3,003,711	-				-0.4
3,003,711	-				+0.4
3,003,711	-				-0.4
3,003,711	-				-3.4
3,003,756	-				+1.5
3,003,758	+				-1.7
3,003,758	+				+2.1
3,003,759	-				+1.1
3,003,759	-				-2.0
3,003,759	-				-2.5
3,003,759	-				+2.4
3,003,759	-				+2.3
3,003,759	-				+0.8
3,003,759	-				-0.6
3,003,777	+				+1.3
3,003,778	-				+0.4
3,003,788	+				+1.6
3,003,788	+				-0.7
3,003,788	+				+0.2
3,003,789	-				+1.4
3,003,789	-				+0.0
3,003,789	-				-0.6
3,003,793	+				-1.0
3,003,793	+				-1.0
3,003,793	+				+1.4
3,003,793	+				-0.8
3,003,793	+				+0.5
3,003,794	-				+1.7
3,003,794	-				-1.9
3,003,794	-				-0.1
3,003,794	-				-2.5
3,003,794	-				+0.7
3,003,835	+				+1.4
3,003,835	+				+0.7
3,003,835	+				-1.1
3,003,835	+				-0.1
3,003,835	+				-2.0
3,003,835	+				+0.0
3,003,835	+				-0.4
3,003,835	+				+0.6
3,003,835	+				-1.5
3,003,835	+				+0.6
3,003,835	+				+1.4
3,003,835	+				-1.4
3,003,835	+				-0.8
3,003,835	+				-0.3
3,003,835	+				+1.4
3,003,836	-				+2.6
3,003,836	-				-1.9
3,003,836	-				+0.2
3,003,836	-				+2.3
3,003,836	-				+0.0
3,003,836	-				+1.0
3,003,836	-				+1.4
3,003,836	-				-2.7
3,003,836	-				+0.7
3,003,836	-				-0.3
3,003,836	-				+0.8
3,003,836	-				-0.9
3,003,836	-				+0.3
3,003,836	-				+0.6
3,003,836	-				+1.1
3,003,836	-				+1.7
3,003,836	-				+0.9
3,003,836	-				+3.1
3,003,836	-				-1.5
3,003,836	-				-0.9
3,003,836	-				-0.2
3,003,836	-				-0.7
3,003,836	-				+0.9
3,003,836	-				+3.0
3,003,837	+				+3.0
3,003,837	+				+0.0
3,003,837	+				+1.0
3,003,837	+				+0.4
3,003,837	+				+1.5
3,003,837	+				+1.3
3,003,837	+				-1.0
3,003,837	+				-1.5
3,003,837	+				+0.1
3,003,838	-				-0.1
3,003,838	-				-2.0
3,003,838	-				-1.0
3,003,838	-				+1.0
3,003,838	-				-0.9
3,003,838	-				-2.2
3,003,838	-				+2.0
3,003,838	-				+1.9
3,003,947	+		EFB2_02866	0.17	-0.6
3,003,947	+		EFB2_02866	0.17	+5.0
3,003,947	+		EFB2_02866	0.17	-1.1
3,003,947	+		EFB2_02866	0.17	-0.6
3,003,948	-		EFB2_02866	0.17	+0.8
3,003,948	-		EFB2_02866	0.17	+0.6
3,003,948	-		EFB2_02866	0.17	-0.1
3,003,949	+		EFB2_02866	0.18	+1.0
3,003,949	+		EFB2_02866	0.18	-0.1
3,003,949	+		EFB2_02866	0.18	-0.7
3,003,950	-		EFB2_02866	0.18	-0.8
3,003,950	-		EFB2_02866	0.18	-1.7
3,003,950	-		EFB2_02866	0.18	+1.0
3,003,972	-		EFB2_02866	0.19	+1.8
3,003,973	-		EFB2_02866	0.19	-0.9
3,004,093	+		EFB2_02866	0.29	-0.8
3,004,093	+		EFB2_02866	0.29	+0.8
3,004,093	+		EFB2_02866	0.29	+0.7
3,004,093	+		EFB2_02866	0.29	+0.1
3,004,093	+		EFB2_02866	0.29	+0.9
3,004,093	+		EFB2_02866	0.29	-1.0
3,004,093	+		EFB2_02866	0.29	-1.7
3,004,093	+		EFB2_02866	0.29	-0.3
3,004,093	+		EFB2_02866	0.29	-0.1
3,004,093	+		EFB2_02866	0.29	+3.2
3,004,093	+		EFB2_02866	0.29	-1.1
3,004,093	+		EFB2_02866	0.29	+1.0
3,004,093	+		EFB2_02866	0.29	+1.4
3,004,093	+		EFB2_02866	0.29	-1.1
3,004,093	+		EFB2_02866	0.29	-1.4
3,004,093	+		EFB2_02866	0.29	+0.1
3,004,093	+		EFB2_02866	0.29	-0.8
3,004,093	+		EFB2_02866	0.29	-0.1
3,004,093	+		EFB2_02866	0.29	-0.6
3,004,093	+		EFB2_02866	0.29	+0.6
3,004,093	+		EFB2_02866	0.29	-0.1
3,004,093	+		EFB2_02866	0.29	+1.4
3,004,093	+		EFB2_02866	0.29	-0.1
3,004,093	+		EFB2_02866	0.29	-0.1
3,004,093	+		EFB2_02866	0.29	-0.6
3,004,093	+		EFB2_02866	0.29	+0.6
3,004,093	+		EFB2_02866	0.29	+0.3
3,004,093	+		EFB2_02866	0.29	-2.7
3,004,093	+		EFB2_02866	0.29	-0.9
3,004,093	+		EFB2_02866	0.29	+0.1
3,004,093	+		EFB2_02866	0.29	-0.6
3,004,093	+		EFB2_02866	0.29	-0.6
3,004,093	+		EFB2_02866	0.29	-2.1
3,004,093	+		EFB2_02866	0.29	+2.6
3,004,093	+		EFB2_02866	0.29	-0.3
3,004,093	+		EFB2_02866	0.29	-0.9
3,004,093	+		EFB2_02866	0.29	+0.5
3,004,093	+		EFB2_02866	0.29	-0.8
3,004,093	+		EFB2_02866	0.29	+0.9
3,004,093	+		EFB2_02866	0.29	+0.2
3,004,093	+		EFB2_02866	0.29	+0.0
3,004,093	+		EFB2_02866	0.29	-2.1
3,004,093	+		EFB2_02866	0.29	-0.4
3,004,093	+		EFB2_02866	0.29	+3.4
3,004,093	+		EFB2_02866	0.29	-1.9
3,004,093	+		EFB2_02866	0.29	-1.6
3,004,093	+		EFB2_02866	0.29	+0.1
3,004,093	+		EFB2_02866	0.29	+1.6
3,004,093	+		EFB2_02866	0.29	-0.6
3,004,093	+		EFB2_02866	0.29	-0.4
3,004,093	+		EFB2_02866	0.29	+0.9
3,004,093	+		EFB2_02866	0.29	-1.5
3,004,093	+		EFB2_02866	0.29	-1.8
3,004,093	+		EFB2_02866	0.29	+2.5
3,004,093	+		EFB2_02866	0.29	+3.0
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