Strain Fitness in Escherichia fergusonii Becca around EFB2_02811

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,959,188	+		EFB2_02809	0.68	-1.2
2,959,188	+		EFB2_02809	0.68	+1.7
2,959,188	+		EFB2_02809	0.68	+2.1
2,959,188	+		EFB2_02809	0.68	+2.1
2,959,188	+		EFB2_02809	0.68	-1.4
2,959,188	+		EFB2_02809	0.68	-1.9
2,959,188	+		EFB2_02809	0.68	-0.6
2,959,188	+		EFB2_02809	0.68	+1.5
2,959,189	-		EFB2_02809	0.69	-0.5
2,959,196	+		EFB2_02809	0.69	+0.4
2,959,204	-		EFB2_02809	0.70	+2.6
2,959,204	-		EFB2_02809	0.70	+0.8
2,959,204	-		EFB2_02809	0.70	-1.4
2,959,220	+		EFB2_02809	0.71	-2.0
2,959,220	+		EFB2_02809	0.71	-1.0
2,959,220	+		EFB2_02809	0.71	+1.5
2,959,221	-		EFB2_02809	0.71	+0.5
2,959,239	-		EFB2_02809	0.73	+3.1
2,959,244	+		EFB2_02809	0.74	+1.5
2,959,245	-		EFB2_02809	0.74	-1.2
2,959,276	+		EFB2_02809	0.77	+2.7
2,959,284	+		EFB2_02809	0.77	-1.0
2,959,284	+		EFB2_02809	0.77	-0.2
2,959,284	+		EFB2_02809	0.77	+0.6
2,959,284	+		EFB2_02809	0.77	-0.2
2,959,285	-		EFB2_02809	0.77	+0.3
2,959,285	-		EFB2_02809	0.77	+0.3
2,959,320	+		EFB2_02809	0.81	-0.6
2,959,320	+		EFB2_02809	0.81	-0.9
2,959,320	+		EFB2_02809	0.81	-1.6
2,959,321	-		EFB2_02809	0.81	+2.4
2,959,321	-		EFB2_02809	0.81	-1.7
2,959,321	-		EFB2_02809	0.81	+2.9
2,959,369	+		EFB2_02809	0.85	+0.7
2,959,370	-		EFB2_02809	0.85	+0.1
2,959,370	-		EFB2_02809	0.85	+2.5
2,959,377	+		EFB2_02809	0.86	+0.5
2,959,377	+		EFB2_02809	0.86	-1.1
2,959,377	+		EFB2_02809	0.86	+1.5
2,959,377	+		EFB2_02809	0.86	-1.8
2,959,377	+		EFB2_02809	0.86	-1.4
2,959,377	+		EFB2_02809	0.86	+1.3
2,959,378	-		EFB2_02809	0.86	+1.1
2,959,378	-		EFB2_02809	0.86	+2.1
2,959,378	-		EFB2_02809	0.86	+1.0
2,959,378	-		EFB2_02809	0.86	+2.1
2,959,378	-		EFB2_02809	0.86	+2.5
2,959,378	-		EFB2_02809	0.86	+1.9
2,959,378	-		EFB2_02809	0.86	-0.1
2,959,394	+		EFB2_02809	0.87	-1.0
2,959,394	+		EFB2_02809	0.87	-0.2
2,959,395	-		EFB2_02809	0.88	+0.2
2,959,398	+		EFB2_02809	0.88	+1.8
2,959,398	+		EFB2_02809	0.88	-0.7
2,959,398	+		EFB2_02809	0.88	-0.2
2,959,398	+		EFB2_02809	0.88	+0.9
2,959,398	+		EFB2_02809	0.88	+0.9
2,959,398	+		EFB2_02809	0.88	-0.5
2,959,398	+		EFB2_02809	0.88	-0.5
2,959,398	+		EFB2_02809	0.88	-2.2
2,959,399	-		EFB2_02809	0.88	+1.5
2,959,399	-		EFB2_02809	0.88	+0.3
2,959,402	-		EFB2_02809	0.88	-1.4
2,959,402	-		EFB2_02809	0.88	+0.5
2,959,402	-		EFB2_02809	0.88	-0.5
2,959,402	-		EFB2_02809	0.88	-1.0
2,959,407	-		EFB2_02809	0.89	+0.3
2,959,448	-				-1.1
2,959,448	-				-2.1
2,959,458	-				+1.6
2,959,460	+				-0.2
2,959,460	+				+1.0
2,959,460	+				-0.6
2,959,460	+				+3.1
2,959,461	-				+0.1
2,959,461	-				+1.6
2,959,461	-				-1.4
2,959,461	-				-0.1
2,959,466	+				-2.2
2,959,507	+				-1.1
2,959,507	+				+1.5
2,959,507	+				+1.0
2,959,508	-				-0.1
2,959,508	-				+1.5
2,959,527	+				-0.1
2,959,527	+				-2.1
2,959,537	+				-1.7
2,959,548	+				+0.8
2,959,548	+				+1.4
2,959,548	+				-0.8
2,959,579	-				-2.0
2,959,579	-				+2.8
2,959,580	+				+0.8
2,959,580	+				+4.1
2,959,580	+				+0.6
2,959,580	+				+2.2
2,959,580	+				-0.1
2,959,580	+				+2.0
2,959,581	-				+1.6
2,959,608	-				-1.8
2,959,617	-				-2.2
2,959,629	-				+0.4
2,959,629	-				-1.9
2,959,629	-				+1.0
2,959,629	-				+0.9
2,959,631	+				-1.6
2,959,631	+				-0.0
2,959,631	+				-1.0
2,959,631	+				-0.7
2,959,631	+				+0.3
2,959,632	-				-1.0
2,959,632	-				+0.4
2,959,632	-				-2.2
2,959,632	-				+0.4
2,959,633	+				+0.1
2,959,633	+				-2.6
2,959,634	-				+1.0
2,959,636	-				+1.1
2,959,647	+				+1.6
2,959,647	+				-1.4
2,959,648	-				+0.8
2,959,648	-				-0.1
2,959,649	+				-1.0
2,959,649	+				+1.8
2,959,650	-				+2.1
2,959,650	-				+3.1
2,959,650	-				+1.3
2,959,651	+				+0.8
2,959,651	+				-0.1
2,959,651	+				-0.8
2,959,651	+				-0.1
2,959,651	+				+0.1
2,959,651	+				-0.2
2,959,651	+				-1.1
2,959,652	-				-0.1
2,959,652	-				-2.1
2,959,652	-				+0.5
2,959,655	-				+2.0
2,959,655	-				+0.2
2,959,692	-				+0.8
2,959,730	-				-1.2
2,959,733	-				-1.1
2,959,748	-				-0.2
2,959,751	+				+0.1
2,959,763	+		EFB2_02810	0.12	+1.1
2,959,764	-		EFB2_02810	0.12	-0.4
2,959,764	-		EFB2_02810	0.12	+2.1
2,959,764	-		EFB2_02810	0.12	+0.8
2,959,764	-		EFB2_02810	0.12	+2.1
2,959,764	-		EFB2_02810	0.12	-1.7
2,959,764	-		EFB2_02810	0.12	+0.5
2,959,787	+		EFB2_02810	0.18	-0.6
2,959,821	+		EFB2_02810	0.27	+0.3
2,959,822	-		EFB2_02810	0.27	+2.9
2,959,822	-		EFB2_02810	0.27	+1.5
2,959,822	-		EFB2_02810	0.27	-0.3
2,959,843	+		EFB2_02810	0.33	-0.1
2,959,844	-		EFB2_02810	0.33	+0.8
2,959,844	-		EFB2_02810	0.33	+0.8
2,959,867	+		EFB2_02810	0.39	-0.7
2,959,867	+		EFB2_02810	0.39	+3.1
2,959,875	-		EFB2_02810	0.41	+0.9
2,959,875	-		EFB2_02810	0.41	-0.1
2,959,875	-		EFB2_02810	0.41	-2.1
2,959,875	-		EFB2_02810	0.41	-1.1
2,959,875	-		EFB2_02810	0.41	-1.0
2,959,875	-		EFB2_02810	0.41	+0.5
2,959,875	-		EFB2_02810	0.41	+1.8
2,959,875	-		EFB2_02810	0.41	-1.6
2,959,875	-		EFB2_02810	0.41	+1.3
2,959,875	-		EFB2_02810	0.41	-0.7
2,959,878	+		EFB2_02810	0.42	+0.9
2,959,878	+		EFB2_02810	0.42	+1.1
2,959,878	+		EFB2_02810	0.42	+1.1
2,959,878	+		EFB2_02810	0.42	-1.4
2,959,878	+		EFB2_02810	0.42	-0.7
2,959,879	-		EFB2_02810	0.42	+3.3
2,959,879	-		EFB2_02810	0.42	-0.8
2,959,879	-		EFB2_02810	0.42	-0.9
2,959,879	-		EFB2_02810	0.42	-2.3
2,959,879	-		EFB2_02810	0.42	+1.5
2,959,879	-		EFB2_02810	0.42	-0.4
2,959,879	-		EFB2_02810	0.42	-1.7
2,959,879	-		EFB2_02810	0.42	-1.6
2,959,882	-		EFB2_02810	0.43	-0.9
2,959,882	-		EFB2_02810	0.43	-1.1
2,959,886	+		EFB2_02810	0.44	-1.2
2,959,890	-		EFB2_02810	0.45	-1.4
2,959,890	-		EFB2_02810	0.45	+0.1
2,959,892	+		EFB2_02810	0.45	+2.2
2,960,001	-		EFB2_02810	0.74	+0.5
2,960,050	+		EFB2_02810	0.86	+2.2
2,960,050	+		EFB2_02810	0.86	+1.0
2,960,050	+		EFB2_02810	0.86	+0.3
2,960,051	-		EFB2_02810	0.87	+1.2
2,960,051	-		EFB2_02810	0.87	-2.2
2,960,051	-		EFB2_02810	0.87	+2.2
2,960,108	-				+1.1
2,960,108	-				-0.4
2,960,108	-				+0.4
2,960,138	+				+1.5
2,960,165	+				+1.7
2,960,165	+				-0.2
2,960,165	+				+0.1
2,960,165	+				+0.3
2,960,165	+				-1.2
2,960,165	+				-1.6
2,960,165	+				+1.1
2,960,176	+				-0.6
2,960,176	+				+1.8
2,960,190	+				-1.9
2,960,190	+				-2.1
2,960,190	+				-1.7
2,960,190	+				+0.1
2,960,190	+				+2.0
2,960,190	+				-0.7
2,960,229	+		EFB2_02811	0.30	-0.9
2,960,266	+		EFB2_02811	0.57	+1.0
2,960,266	+		EFB2_02811	0.57	-2.2
2,960,268	+		EFB2_02811	0.59	+4.7
2,960,268	+		EFB2_02811	0.59	+2.2
2,960,268	+		EFB2_02811	0.59	+1.9
2,960,268	+		EFB2_02811	0.59	-0.0
2,960,268	+		EFB2_02811	0.59	+2.1
2,960,268	+		EFB2_02811	0.59	+2.1
2,960,268	+		EFB2_02811	0.59	+1.8
2,960,268	+		EFB2_02811	0.59	-0.2
2,960,309	+		EFB2_02811	0.88	-0.7
2,960,312	+				-1.5
2,960,374	+		EFB2_02812	0.14	+2.1
2,960,437	+		EFB2_02812	0.31	-1.0
2,960,437	+		EFB2_02812	0.31	+3.1
2,960,530	+		EFB2_02812	0.57	-0.7
2,960,530	+		EFB2_02812	0.57	+0.3
2,960,626	+		EFB2_02812	0.83	-1.0
2,960,634	+		EFB2_02812	0.85	-0.8
2,960,634	+		EFB2_02812	0.85	+1.1
2,960,644	+		EFB2_02812	0.88	+0.5
2,960,663	+				+0.3
2,960,663	+				-2.2
2,960,676	+				+0.3
2,960,677	-				-1.7
2,960,677	-				-0.1
2,960,677	-				+1.1
2,960,681	-				+0.5
2,960,681	-				-0.6
2,960,681	-				+1.5
2,960,691	+				-0.8
2,960,692	-				+0.8
2,960,692	-				+0.3
2,960,694	+				+1.3
2,960,715	+				-0.7
2,960,715	+				-0.1
2,960,715	+				-1.0
2,960,715	+				+1.1
2,960,715	+				-0.1
2,960,715	+				-0.6
2,960,715	+				+3.1
2,960,715	+				-0.5
2,960,715	+				+1.5
2,960,715	+				+1.1
2,960,759	+				-1.2
2,960,759	+				-0.2
2,960,759	+				-0.2
2,960,759	+				+1.8
2,960,813	+				-0.8
2,960,819	+				-1.7
2,960,819	+				-1.5
2,960,823	+				+0.3
2,960,823	+				+1.3
2,960,823	+				+0.5
2,960,823	+				+0.3
2,960,823	+				+0.9
2,960,823	+				-0.9
2,960,856	+				+0.1
2,960,856	+				-0.9
2,960,856	+				-0.8
2,960,856	+				-0.2
2,960,872	+				+1.6
2,960,872	+				-1.0
2,960,872	+				+1.5
2,960,956	-		EFB2_02813	0.18	+0.5
2,960,962	+		EFB2_02813	0.20	-2.1
2,960,962	+		EFB2_02813	0.20	-0.4
2,960,971	+		EFB2_02813	0.23	+2.5
2,961,002	-		EFB2_02813	0.32	-0.5
2,961,010	+		EFB2_02813	0.34	+0.8
2,961,010	+		EFB2_02813	0.34	+1.1
2,961,010	+		EFB2_02813	0.34	+3.2
2,961,011	-		EFB2_02813	0.35	+0.1
2,961,011	-		EFB2_02813	0.35	+1.1
2,961,068	+		EFB2_02813	0.51	-1.0
2,961,103	-		EFB2_02813	0.61	-1.7
2,961,117	-		EFB2_02813	0.65	+0.1
2,961,119	+		EFB2_02813	0.66	-0.5
2,961,120	-		EFB2_02813	0.66	+1.1
2,961,135	+		EFB2_02813	0.71	+0.1
2,961,135	+		EFB2_02813	0.71	+0.9
2,961,135	+		EFB2_02813	0.71	+0.1
2,961,135	+		EFB2_02813	0.71	+0.3
2,961,135	+		EFB2_02813	0.71	+0.8
2,961,135	+		EFB2_02813	0.71	-1.3
2,961,136	-		EFB2_02813	0.71	+1.1
2,961,156	+		EFB2_02813	0.77	-1.9
2,961,156	+		EFB2_02813	0.77	-0.1
2,961,157	-		EFB2_02813	0.77	+0.8
2,961,181	+		EFB2_02813	0.84	-0.6
2,961,181	+		EFB2_02813	0.84	-1.1
2,961,190	+		EFB2_02813	0.87	+0.1
2,961,190	+		EFB2_02813	0.87	+0.5
2,961,217	+				+2.9
2,961,253	+				+0.4
2,961,289	+				-1.9
2,961,289	+				+2.6
2,961,289	+				+1.5
2,961,303	+				+0.2
2,961,324	+				+2.3