Strain Fitness in Escherichia fergusonii Becca around EFB2_02638

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,791,524	+		EFB2_02637	0.22	+0.4
2,791,524	+		EFB2_02637	0.22	-0.7
2,791,524	+		EFB2_02637	0.22	+2.8
2,791,525	-		EFB2_02637	0.22	+2.1
2,791,525	-		EFB2_02637	0.22	+1.0
2,791,579	+		EFB2_02637	0.27	+2.1
2,791,579	+		EFB2_02637	0.27	-1.5
2,791,583	+		EFB2_02637	0.27	+0.7
2,791,583	+		EFB2_02637	0.27	-1.0
2,791,583	+		EFB2_02637	0.27	-1.1
2,791,583	+		EFB2_02637	0.27	-1.0
2,791,583	+		EFB2_02637	0.27	-1.2
2,791,583	+		EFB2_02637	0.27	+1.2
2,791,583	+		EFB2_02637	0.27	-0.7
2,791,583	+		EFB2_02637	0.27	+0.9
2,791,583	+		EFB2_02637	0.27	-1.3
2,791,583	+		EFB2_02637	0.27	-0.2
2,791,583	+		EFB2_02637	0.27	+2.2
2,791,583	+		EFB2_02637	0.27	-0.7
2,791,584	-		EFB2_02637	0.27	+1.2
2,791,584	-		EFB2_02637	0.27	+1.5
2,791,584	-		EFB2_02637	0.27	+0.7
2,791,584	-		EFB2_02637	0.27	-2.1
2,791,584	-		EFB2_02637	0.27	-1.1
2,791,584	-		EFB2_02637	0.27	+2.2
2,791,584	-		EFB2_02637	0.27	-0.8
2,791,584	-		EFB2_02637	0.27	+0.9
2,791,584	-		EFB2_02637	0.27	-0.9
2,791,584	-		EFB2_02637	0.27	+1.2
2,791,584	-		EFB2_02637	0.27	+1.5
2,791,584	-		EFB2_02637	0.27	-3.6
2,791,584	-		EFB2_02637	0.27	+1.2
2,791,584	-		EFB2_02637	0.27	+0.4
2,791,584	-		EFB2_02637	0.27	+0.7
2,791,584	-		EFB2_02637	0.27	+0.6
2,791,584	-		EFB2_02637	0.27	-2.4
2,791,584	-		EFB2_02637	0.27	-1.5
2,791,584	-		EFB2_02637	0.27	-0.3
2,791,584	-		EFB2_02637	0.27	-0.1
2,791,584	-		EFB2_02637	0.27	-1.2
2,791,584	-		EFB2_02637	0.27	-0.9
2,791,584	-		EFB2_02637	0.27	+0.5
2,791,584	-		EFB2_02637	0.27	+1.1
2,791,584	-		EFB2_02637	0.27	+0.5
2,791,584	-		EFB2_02637	0.27	+2.0
2,791,584	-		EFB2_02637	0.27	-0.4
2,791,587	+		EFB2_02637	0.27	+0.1
2,791,587	+		EFB2_02637	0.27	+0.4
2,791,587	+		EFB2_02637	0.27	+3.2
2,791,587	+		EFB2_02637	0.27	+2.2
2,791,587	+		EFB2_02637	0.27	+1.5
2,791,587	+		EFB2_02637	0.27	-0.9
2,791,587	+		EFB2_02637	0.27	+1.3
2,791,588	-		EFB2_02637	0.27	-2.1
2,791,588	-		EFB2_02637	0.27	-2.0
2,791,588	-		EFB2_02637	0.27	-0.5
2,791,588	-		EFB2_02637	0.27	-0.7
2,791,590	+		EFB2_02637	0.28	+1.7
2,791,590	+		EFB2_02637	0.28	+1.4
2,791,590	+		EFB2_02637	0.28	-0.6
2,791,591	-		EFB2_02637	0.28	-1.1
2,791,604	+		EFB2_02637	0.29	+2.0
2,791,604	+		EFB2_02637	0.29	+1.5
2,791,605	-		EFB2_02637	0.29	-0.8
2,791,605	-		EFB2_02637	0.29	+1.8
2,791,605	-		EFB2_02637	0.29	-1.1
2,791,640	+		EFB2_02637	0.32	+3.2
2,791,640	+		EFB2_02637	0.32	+1.2
2,791,640	+		EFB2_02637	0.32	+1.7
2,791,641	-		EFB2_02637	0.32	-1.8
2,791,641	-		EFB2_02637	0.32	+1.4
2,791,641	-		EFB2_02637	0.32	-1.1
2,791,668	+		EFB2_02637	0.35	-1.7
2,791,668	+		EFB2_02637	0.35	-0.2
2,791,668	+		EFB2_02637	0.35	+0.1
2,791,669	-		EFB2_02637	0.35	+1.9
2,791,669	-		EFB2_02637	0.35	-0.8
2,791,669	-		EFB2_02637	0.35	-0.4
2,791,697	+		EFB2_02637	0.37	-0.9
2,791,698	-		EFB2_02637	0.37	+1.6
2,791,698	-		EFB2_02637	0.37	+0.2
2,791,698	-		EFB2_02637	0.37	-1.5
2,791,698	-		EFB2_02637	0.37	-0.7
2,791,824	+		EFB2_02637	0.48	-0.2
2,791,824	+		EFB2_02637	0.48	+0.7
2,791,825	-		EFB2_02637	0.48	-2.0
2,791,825	-		EFB2_02637	0.48	+0.2
2,791,825	-		EFB2_02637	0.48	+0.2
2,791,841	-		EFB2_02637	0.50	+0.7
2,791,865	-		EFB2_02637	0.52	-0.6
2,791,873	-		EFB2_02637	0.53	-0.6
2,791,907	-		EFB2_02637	0.56	-0.1
2,791,923	+		EFB2_02637	0.57	-0.6
2,791,924	-		EFB2_02637	0.57	-2.2
2,791,924	-		EFB2_02637	0.57	+0.5
2,791,924	-		EFB2_02637	0.57	+0.9
2,791,924	-		EFB2_02637	0.57	+2.4
2,792,009	+		EFB2_02637	0.65	+1.2
2,792,009	+		EFB2_02637	0.65	+0.9
2,792,009	+		EFB2_02637	0.65	-1.3
2,792,009	+		EFB2_02637	0.65	+0.9
2,792,009	+		EFB2_02637	0.65	+0.7
2,792,009	+		EFB2_02637	0.65	+3.4
2,792,010	-		EFB2_02637	0.65	-0.2
2,792,010	-		EFB2_02637	0.65	-0.3
2,792,010	-		EFB2_02637	0.65	-0.8
2,792,038	+		EFB2_02637	0.67	+0.5
2,792,057	+		EFB2_02637	0.69	+0.1
2,792,057	+		EFB2_02637	0.69	-1.8
2,792,058	-		EFB2_02637	0.69	-0.2
2,792,058	-		EFB2_02637	0.69	+1.7
2,792,058	-		EFB2_02637	0.69	+1.2
2,792,058	-		EFB2_02637	0.69	+3.2
2,792,090	-		EFB2_02637	0.72	-1.7
2,792,101	+		EFB2_02637	0.73	+0.1
2,792,101	+		EFB2_02637	0.73	-0.5
2,792,132	+		EFB2_02637	0.76	-1.8
2,792,133	-		EFB2_02637	0.76	+1.0
2,792,133	-		EFB2_02637	0.76	+0.1
2,792,152	-		EFB2_02637	0.77	+0.9
2,792,153	+		EFB2_02637	0.78	-0.9
2,792,245	+		EFB2_02637	0.86	+0.2
2,792,245	+		EFB2_02637	0.86	-0.2
2,792,246	-		EFB2_02637	0.86	-1.6
2,792,331	-				+0.1
2,792,331	-				-1.8
2,792,333	+				-0.2
2,792,333	+				+2.7
2,792,333	+				+0.8
2,792,333	+				-0.5
2,792,334	-				+0.2
2,792,400	+				+3.2
2,792,400	+				-0.1
2,792,400	+				+0.4
2,792,400	+				+0.1
2,792,400	+				-1.2
2,792,400	+				+0.2
2,792,400	+				+1.0
2,792,400	+				-0.5
2,792,400	+				+1.0
2,792,400	+				+0.1
2,792,400	+				-0.0
2,792,400	+				+1.5
2,792,400	+				+1.7
2,792,400	+				+0.4
2,792,400	+				-1.5
2,792,400	+				+0.2
2,792,400	+				+0.4
2,792,400	+				+0.7
2,792,400	+				+1.2
2,792,400	+				-1.8
2,792,400	+				-0.3
2,792,400	+				-0.5
2,792,400	+				+1.7
2,792,400	+				+4.8
2,792,400	+				+0.3
2,792,400	+				-2.0
2,792,400	+				+1.2
2,792,400	+				-0.8
2,792,400	+				+0.4
2,792,400	+				+2.2
2,792,400	+				+0.8
2,792,400	+				-1.3
2,792,400	+				+1.5
2,792,400	+				+0.6
2,792,400	+				+0.7
2,792,401	-				+1.2
2,792,401	-				-1.0
2,792,401	-				+0.4
2,792,401	-				-1.8
2,792,401	-				+2.2
2,792,401	-				+0.0
2,792,401	-				-0.7
2,792,401	-				+0.2
2,792,401	-				+0.2
2,792,401	-				-1.7
2,792,401	-				+0.2
2,792,401	-				-0.5
2,792,401	-				+0.1
2,792,401	-				+1.4
2,792,401	-				+0.8
2,792,403	+				+1.2
2,792,403	+				+0.5
2,792,472	+				+0.2
2,792,472	+				-0.8
2,792,472	+				-1.9
2,792,472	+				+1.7
2,792,472	+				+0.4
2,792,472	+				+0.1
2,792,472	+				-1.5
2,792,472	+				+0.9
2,792,472	+				-0.9
2,792,473	-				-0.1
2,792,473	-				+0.2
2,792,473	-				-1.5
2,792,473	-				+0.1
2,792,473	-				+1.7
2,792,473	-				+0.9
2,792,473	-				+0.4
2,792,473	-				+0.7
2,792,473	-				-3.1
2,792,473	-				-1.1
2,792,473	-				+0.2
2,792,473	-				-0.2
2,792,473	-				+1.5
2,792,505	+				-0.8
2,792,506	-				+0.9
2,792,506	-				-1.7
2,792,549	+				+1.2
2,792,736	+		EFB2_02638	0.14	+0.7
2,792,789	+		EFB2_02638	0.16	-0.8
2,792,790	-		EFB2_02638	0.16	+1.2
2,792,838	+		EFB2_02638	0.19	+0.7
2,792,902	+		EFB2_02638	0.22	-1.5
2,792,902	+		EFB2_02638	0.22	+1.6
2,792,903	-		EFB2_02638	0.22	-1.1
2,792,903	-		EFB2_02638	0.22	+2.9
2,792,903	-		EFB2_02638	0.22	-0.5
2,792,903	-		EFB2_02638	0.22	+2.9
2,792,903	-		EFB2_02638	0.22	+0.9
2,792,920	+		EFB2_02638	0.23	+1.2
2,792,920	+		EFB2_02638	0.23	+2.4
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	+0.9
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	-0.1
2,792,920	+		EFB2_02638	0.23	-0.1
2,792,920	+		EFB2_02638	0.23	+1.2
2,792,920	+		EFB2_02638	0.23	-1.6
2,792,920	+		EFB2_02638	0.23	-1.7
2,792,920	+		EFB2_02638	0.23	-0.9
2,792,920	+		EFB2_02638	0.23	-0.9
2,792,920	+		EFB2_02638	0.23	+0.1
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	-1.5
2,792,920	+		EFB2_02638	0.23	+0.7
2,792,920	+		EFB2_02638	0.23	+0.4
2,792,920	+		EFB2_02638	0.23	-1.9
2,792,920	+		EFB2_02638	0.23	-4.5
2,792,920	+		EFB2_02638	0.23	-1.9
2,792,920	+		EFB2_02638	0.23	+0.4
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	+2.8
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,920	+		EFB2_02638	0.23	-0.6
2,792,920	+		EFB2_02638	0.23	-1.3
2,792,920	+		EFB2_02638	0.23	+0.9
2,792,920	+		EFB2_02638	0.23	-0.1
2,792,920	+		EFB2_02638	0.23	-0.9
2,792,920	+		EFB2_02638	0.23	-1.4
2,792,920	+		EFB2_02638	0.23	-1.9
2,792,920	+		EFB2_02638	0.23	-0.8
2,792,921	-		EFB2_02638	0.23	+0.9
2,792,921	-		EFB2_02638	0.23	-0.6
2,792,921	-		EFB2_02638	0.23	+1.1
2,792,921	-		EFB2_02638	0.23	-0.1
2,792,921	-		EFB2_02638	0.23	-1.5
2,792,921	-		EFB2_02638	0.23	-0.5
2,792,921	-		EFB2_02638	0.23	+0.4
2,792,921	-		EFB2_02638	0.23	+0.7
2,792,921	-		EFB2_02638	0.23	+0.9
2,792,921	-		EFB2_02638	0.23	+0.9
2,792,921	-		EFB2_02638	0.23	-0.9
2,792,921	-		EFB2_02638	0.23	+1.5
2,792,921	-		EFB2_02638	0.23	-0.5
2,792,921	-		EFB2_02638	0.23	+0.7
2,792,921	-		EFB2_02638	0.23	+3.2
2,792,921	-		EFB2_02638	0.23	-1.5
2,792,921	-		EFB2_02638	0.23	+1.3
2,792,921	-		EFB2_02638	0.23	-0.5
2,792,921	-		EFB2_02638	0.23	-0.9
2,792,921	-		EFB2_02638	0.23	-1.4
2,792,921	-		EFB2_02638	0.23	+3.2
2,792,921	-		EFB2_02638	0.23	+1.6
2,792,948	+		EFB2_02638	0.25	+0.9
2,792,976	+		EFB2_02638	0.26	+0.1
2,792,976	+		EFB2_02638	0.26	-0.3
2,792,976	+		EFB2_02638	0.26	+1.2
2,793,093	+		EFB2_02638	0.32	+1.2
2,793,094	-		EFB2_02638	0.32	+0.7
2,793,229	+		EFB2_02638	0.39	+0.2
2,793,229	+		EFB2_02638	0.39	-1.3
2,793,229	+		EFB2_02638	0.39	+0.2
2,793,229	+		EFB2_02638	0.39	+1.5
2,793,229	+		EFB2_02638	0.39	+2.0
2,793,229	+		EFB2_02638	0.39	-0.2
2,793,230	-		EFB2_02638	0.39	+2.2
2,793,230	-		EFB2_02638	0.39	-0.9
2,793,230	-		EFB2_02638	0.39	+1.2
2,793,230	-		EFB2_02638	0.39	-0.9
2,793,230	-		EFB2_02638	0.39	-1.8
2,793,230	-		EFB2_02638	0.39	-1.5
2,793,252	+		EFB2_02638	0.40	+1.1
2,793,252	+		EFB2_02638	0.40	+5.8
2,793,252	+		EFB2_02638	0.40	-0.8
2,793,253	-		EFB2_02638	0.40	-1.8
2,793,253	-		EFB2_02638	0.40	-0.8
2,793,253	-		EFB2_02638	0.40	-0.5
2,793,253	-		EFB2_02638	0.40	+2.2
2,793,360	+		EFB2_02638	0.46	+0.1
2,793,360	+		EFB2_02638	0.46	+1.7
2,793,360	+		EFB2_02638	0.46	-1.5
2,793,360	+		EFB2_02638	0.46	-2.1
2,793,360	+		EFB2_02638	0.46	+1.7
2,793,360	+		EFB2_02638	0.46	+1.8
2,793,360	+		EFB2_02638	0.46	+1.2
2,793,361	-		EFB2_02638	0.46	+1.7
2,793,361	-		EFB2_02638	0.46	-1.6
2,793,409	+		EFB2_02638	0.48	+0.9
2,793,410	-		EFB2_02638	0.48	-0.5
2,793,410	-		EFB2_02638	0.48	-1.1
2,793,500	+		EFB2_02638	0.53	-2.0
2,793,500	+		EFB2_02638	0.53	-1.4
2,793,500	+		EFB2_02638	0.53	+0.4
2,793,529	-		EFB2_02638	0.55	-0.1
2,793,570	+		EFB2_02638	0.57	+2.1
2,793,571	-		EFB2_02638	0.57	-0.2
2,793,633	+		EFB2_02638	0.60	-2.5
2,793,680	+		EFB2_02638	0.62	+0.4
2,793,709	+		EFB2_02638	0.64	+0.6
2,793,709	+		EFB2_02638	0.64	+0.9
2,793,709	+		EFB2_02638	0.64	-0.0
2,793,709	+		EFB2_02638	0.64	+0.4
2,793,709	+		EFB2_02638	0.64	+2.5
2,793,709	+		EFB2_02638	0.64	+0.2
2,793,709	+		EFB2_02638	0.64	-0.9
2,793,709	+		EFB2_02638	0.64	+0.4
2,793,709	+		EFB2_02638	0.64	+2.2
2,793,709	+		EFB2_02638	0.64	+2.6
2,793,709	+		EFB2_02638	0.64	+0.4
2,793,709	+		EFB2_02638	0.64	-0.7
2,793,709	+		EFB2_02638	0.64	-0.7
2,793,709	+		EFB2_02638	0.64	+3.2
2,793,709	+		EFB2_02638	0.64	+1.4
2,793,709	+		EFB2_02638	0.64	+0.0
2,793,709	+		EFB2_02638	0.64	-1.4
2,793,709	+		EFB2_02638	0.64	+0.9
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