Strain Fitness in Escherichia fergusonii Becca around EFB2_02576

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,722,254	-		EFB2_02575	0.70	-1.8
2,722,254	-		EFB2_02575	0.70	-2.0
2,722,254	-		EFB2_02575	0.70	+0.9
2,722,273	+		EFB2_02575	0.71	-0.8
2,722,274	-		EFB2_02575	0.71	+3.0
2,722,339	+		EFB2_02575	0.74	-1.6
2,722,340	-		EFB2_02575	0.74	+0.2
2,722,394	+		EFB2_02575	0.76	-1.6
2,722,394	+		EFB2_02575	0.76	-0.2
2,722,405	+		EFB2_02575	0.76	+2.3
2,722,405	+		EFB2_02575	0.76	+0.0
2,722,406	-		EFB2_02575	0.76	+1.0
2,722,418	+		EFB2_02575	0.77	-0.2
2,722,447	+		EFB2_02575	0.78	+1.5
2,722,447	+		EFB2_02575	0.78	-0.0
2,722,448	-		EFB2_02575	0.78	+2.9
2,722,448	-		EFB2_02575	0.78	-1.9
2,722,448	-		EFB2_02575	0.78	-1.8
2,722,450	+		EFB2_02575	0.78	-2.5
2,722,450	+		EFB2_02575	0.78	+0.5
2,722,450	+		EFB2_02575	0.78	-1.6
2,722,450	+		EFB2_02575	0.78	-0.7
2,722,450	+		EFB2_02575	0.78	+0.4
2,722,451	-		EFB2_02575	0.78	+0.5
2,722,451	-		EFB2_02575	0.78	+0.1
2,722,451	-		EFB2_02575	0.78	-1.8
2,722,451	-		EFB2_02575	0.78	+0.8
2,722,451	-		EFB2_02575	0.78	-0.1
2,722,451	-		EFB2_02575	0.78	-1.0
2,722,469	+		EFB2_02575	0.79	-2.1
2,722,516	+		EFB2_02575	0.80	-0.2
2,722,516	+		EFB2_02575	0.80	+0.5
2,722,516	+		EFB2_02575	0.80	+1.7
2,722,516	+		EFB2_02575	0.80	-1.4
2,722,516	+		EFB2_02575	0.80	+1.7
2,722,516	+		EFB2_02575	0.80	-0.5
2,722,517	-		EFB2_02575	0.80	+0.6
2,722,517	-		EFB2_02575	0.80	-0.9
2,722,517	-		EFB2_02575	0.80	-1.2
2,722,517	-		EFB2_02575	0.80	+0.6
2,722,517	-		EFB2_02575	0.80	-0.4
2,722,517	-		EFB2_02575	0.80	-0.2
2,722,666	+		EFB2_02575	0.86	+0.3
2,722,667	-		EFB2_02575	0.86	-0.9
2,722,760	+		EFB2_02575	0.90	-0.7
2,722,760	+		EFB2_02575	0.90	-2.0
2,722,761	-		EFB2_02575	0.90	+1.7
2,722,761	-		EFB2_02575	0.90	+2.1
2,722,761	-		EFB2_02575	0.90	+0.7
2,722,761	-		EFB2_02575	0.90	-0.7
2,722,817	-				+0.1
2,722,846	-				+2.2
2,722,866	-				-1.8
2,722,866	-				+2.5
2,722,866	-				+0.2
2,722,874	-				+0.8
2,722,898	+				-1.2
2,722,898	+				-0.8
2,722,898	+				+1.7
2,722,898	+				+2.3
2,722,898	+				-0.0
2,722,898	+				+3.7
2,722,898	+				+0.4
2,722,899	-				-0.1
2,722,899	-				-0.9
2,722,899	-				+3.0
2,722,899	-				-0.9
2,722,899	-				+0.8
2,722,899	-				-0.4
2,722,899	-				-0.2
2,722,899	-				+2.3
2,722,899	-				+2.2
2,722,899	-				+2.0
2,722,906	+				+1.0
2,722,906	+				+0.1
2,722,906	+				-0.3
2,722,906	+				-1.3
2,722,906	+				-0.0
2,722,906	+				-1.9
2,722,906	+				-2.0
2,722,906	+				-0.2
2,722,906	+				-1.9
2,722,906	+				+1.5
2,722,906	+				-2.3
2,722,906	+				+2.1
2,722,906	+				+2.0
2,722,907	-				-1.2
2,722,907	-				+0.7
2,722,907	-				+1.0
2,722,907	-				+0.5
2,722,907	-				+1.1
2,722,907	-				-0.3
2,722,907	-				+1.3
2,722,907	-				-1.9
2,722,907	-				+2.3
2,722,907	-				+1.8
2,722,907	-				-0.5
2,722,907	-				-1.5
2,722,907	-				-1.1
2,722,907	-				-0.0
2,722,907	-				-0.3
2,722,907	-				+0.3
2,722,990	+				-0.3
2,722,990	+				-0.9
2,722,990	+				-0.7
2,722,990	+				+0.9
2,722,990	+				-0.3
2,722,990	+				-0.9
2,722,998	-				+0.8
2,723,000	+				+0.4
2,723,001	-				-0.6
2,723,001	-				+1.1
2,723,020	+				+1.3
2,723,021	-				+1.0
2,723,021	-				+0.3
2,723,021	-				+0.3
2,723,021	-				+1.7
2,723,022	+				-0.7
2,723,022	+				-0.2
2,723,022	+				-0.8
2,723,022	+				-0.0
2,723,023	-				-1.0
2,723,023	-				-0.8
2,723,039	+				+0.6
2,723,043	+				+0.3
2,723,043	+				-1.6
2,723,043	+				-0.0
2,723,043	+				-0.6
2,723,043	+				+0.5
2,723,043	+				-0.6
2,723,043	+				-1.4
2,723,043	+				+1.3
2,723,043	+				-2.3
2,723,043	+				-1.2
2,723,043	+				-0.3
2,723,043	+				-0.4
2,723,044	-				+2.5
2,723,044	-				-1.4
2,723,044	-				-0.0
2,723,044	-				-1.7
2,723,044	-				-1.1
2,723,044	-				-1.1
2,723,044	-				-0.3
2,723,044	-				-0.5
2,723,044	-				+1.3
2,723,044	-				+1.3
2,723,046	+				+0.2
2,723,123	+				+0.4
2,723,123	+				-2.2
2,723,123	+				-1.4
2,723,128	+				-0.7
2,723,128	+				-1.8
2,723,128	+				+0.9
2,723,128	+				+0.9
2,723,128	+				-1.2
2,723,128	+				+0.6
2,723,128	+				+2.0
2,723,128	+				+1.5
2,723,128	+				+1.7
2,723,129	-				+2.4
2,723,129	-				+1.0
2,723,129	-				+1.3
2,723,129	-				+3.0
2,723,129	-				-1.0
2,723,129	-				-0.3
2,723,134	+				+0.3
2,723,134	+				-0.8
2,723,134	+				-0.8
2,723,134	+				+1.5
2,723,134	+				-0.6
2,723,134	+				+2.6
2,723,134	+				+2.7
2,723,134	+				-1.0
2,723,134	+				+1.8
2,723,134	+				+1.1
2,723,134	+				+1.0
2,723,134	+				+3.1
2,723,134	+				+2.3
2,723,134	+				+0.3
2,723,134	+				+0.3
2,723,134	+				-1.0
2,723,134	+				-1.4
2,723,134	+				-0.5
2,723,134	+				-2.2
2,723,134	+				+1.0
2,723,134	+				+0.8
2,723,134	+				+2.3
2,723,134	+				-0.3
2,723,134	+				-0.4
2,723,134	+				+3.7
2,723,134	+				+0.2
2,723,134	+				-1.8
2,723,134	+				+1.7
2,723,135	-				-1.6
2,723,135	-				-0.5
2,723,135	-				+2.7
2,723,135	-				-1.1
2,723,135	-				+0.1
2,723,135	-				+0.1
2,723,135	-				-1.4
2,723,135	-				+0.2
2,723,135	-				-1.4
2,723,135	-				-0.8
2,723,135	-				-1.0
2,723,135	-				-1.2
2,723,135	-				-0.3
2,723,135	-				+2.1
2,723,135	-				+1.0
2,723,176	-				+2.1
2,723,202	+				-1.7
2,723,210	+				-1.6
2,723,210	+				-1.2
2,723,210	+				+1.4
2,723,211	-				-2.1
2,723,211	-				+0.8
2,723,258	+				-2.1
2,723,258	+				-2.3
2,723,258	+				-0.7
2,723,258	+				+0.2
2,723,259	-				+1.2
2,723,260	+				+1.0
2,723,260	+				-0.2
2,723,260	+				+1.1
2,723,260	+				+0.4
2,723,260	+				+1.3
2,723,260	+				-1.7
2,723,261	-				-0.7
2,723,261	-				-1.9
2,723,261	-				+2.6
2,723,261	-				+0.5
2,723,273	+				+0.3
2,723,273	+				+0.4
2,723,273	+				+1.5
2,723,285	+				+1.6
2,723,285	+				-1.2
2,723,286	-				+1.3
2,723,359	+		EFB2_02576	0.12	+1.4
2,723,385	+		EFB2_02576	0.14	-0.5
2,723,385	+		EFB2_02576	0.14	-1.3
2,723,385	+		EFB2_02576	0.14	+0.0
2,723,386	-		EFB2_02576	0.14	+0.7
2,723,386	-		EFB2_02576	0.14	-0.7
2,723,389	+		EFB2_02576	0.15	-0.6
2,723,389	+		EFB2_02576	0.15	-0.1
2,723,389	+		EFB2_02576	0.15	+0.6
2,723,389	+		EFB2_02576	0.15	-0.2
2,723,389	+		EFB2_02576	0.15	+0.4
2,723,389	+		EFB2_02576	0.15	+0.7
2,723,389	+		EFB2_02576	0.15	+1.4
2,723,389	+		EFB2_02576	0.15	+0.4
2,723,390	-		EFB2_02576	0.15	+0.3
2,723,449	+		EFB2_02576	0.21	+1.4
2,723,449	+		EFB2_02576	0.21	-1.1
2,723,450	-		EFB2_02576	0.21	-0.4
2,723,453	+		EFB2_02576	0.21	-2.2
2,723,453	+		EFB2_02576	0.21	-1.8
2,723,453	+		EFB2_02576	0.21	-0.3
2,723,453	+		EFB2_02576	0.21	-0.7
2,723,453	+		EFB2_02576	0.21	+2.3
2,723,453	+		EFB2_02576	0.21	+0.1
2,723,453	+		EFB2_02576	0.21	+1.2
2,723,453	+		EFB2_02576	0.21	-1.2
2,723,453	+		EFB2_02576	0.21	-0.1
2,723,453	+		EFB2_02576	0.21	-0.5
2,723,454	-		EFB2_02576	0.21	-0.2
2,723,454	-		EFB2_02576	0.21	+3.0
2,723,454	-		EFB2_02576	0.21	+0.7
2,723,454	-		EFB2_02576	0.21	+2.6
2,723,454	-		EFB2_02576	0.21	+0.5
2,723,454	-		EFB2_02576	0.21	-1.2
2,723,455	+		EFB2_02576	0.21	-0.1
2,723,455	+		EFB2_02576	0.21	+1.8
2,723,455	+		EFB2_02576	0.21	-1.6
2,723,456	-		EFB2_02576	0.22	-0.9
2,723,456	-		EFB2_02576	0.22	+0.1
2,723,456	-		EFB2_02576	0.22	+1.0
2,723,523	+		EFB2_02576	0.28	-0.9
2,723,523	+		EFB2_02576	0.28	-0.2
2,723,523	+		EFB2_02576	0.28	-0.9
2,723,524	-		EFB2_02576	0.28	+1.0
2,723,524	-		EFB2_02576	0.28	+1.5
2,723,524	-		EFB2_02576	0.28	-1.0
2,723,540	+		EFB2_02576	0.30	-2.1
2,723,540	+		EFB2_02576	0.30	+2.1
2,723,540	+		EFB2_02576	0.30	+2.1
2,723,541	-		EFB2_02576	0.30	-0.1
2,723,541	-		EFB2_02576	0.30	+0.5
2,723,541	-		EFB2_02576	0.30	+0.5
2,723,541	-		EFB2_02576	0.30	+1.2
2,723,575	+		EFB2_02576	0.34	-0.7
2,723,612	+		EFB2_02576	0.37	+1.5
2,723,612	+		EFB2_02576	0.37	+1.4
2,723,612	+		EFB2_02576	0.37	-0.5
2,723,633	-		EFB2_02576	0.39	-1.1
2,723,633	-		EFB2_02576	0.39	-0.4
2,723,633	-		EFB2_02576	0.39	-0.3
2,723,662	+		EFB2_02576	0.42	-2.7
2,723,662	+		EFB2_02576	0.42	+1.4
2,723,662	+		EFB2_02576	0.42	+2.5
2,723,662	+		EFB2_02576	0.42	-0.3
2,723,662	+		EFB2_02576	0.42	+0.4
2,723,663	-		EFB2_02576	0.42	-0.0
2,723,663	-		EFB2_02576	0.42	-1.7
2,723,665	+		EFB2_02576	0.43	+4.9
2,723,665	+		EFB2_02576	0.43	+1.3
2,723,665	+		EFB2_02576	0.43	-0.5
2,723,665	+		EFB2_02576	0.43	+1.3
2,723,665	+		EFB2_02576	0.43	+1.0
2,723,665	+		EFB2_02576	0.43	-2.0
2,723,665	+		EFB2_02576	0.43	-0.8
2,723,665	+		EFB2_02576	0.43	+1.9
2,723,665	+		EFB2_02576	0.43	+1.4
2,723,665	+		EFB2_02576	0.43	-2.7
2,723,665	+		EFB2_02576	0.43	-1.5
2,723,665	+		EFB2_02576	0.43	+1.7
2,723,665	+		EFB2_02576	0.43	+1.3
2,723,665	+		EFB2_02576	0.43	+1.7
2,723,665	+		EFB2_02576	0.43	-2.4
2,723,665	+		EFB2_02576	0.43	-0.7
2,723,665	+		EFB2_02576	0.43	-0.0
2,723,665	+		EFB2_02576	0.43	-1.5
2,723,665	+		EFB2_02576	0.43	+0.4
2,723,665	+		EFB2_02576	0.43	+0.7
2,723,665	+		EFB2_02576	0.43	+2.3
2,723,665	+		EFB2_02576	0.43	+0.3
2,723,665	+		EFB2_02576	0.43	+0.1
2,723,665	+		EFB2_02576	0.43	+0.0
2,723,665	+		EFB2_02576	0.43	+0.2
2,723,665	+		EFB2_02576	0.43	-0.4
2,723,665	+		EFB2_02576	0.43	-0.6
2,723,665	+		EFB2_02576	0.43	+0.1
2,723,665	+		EFB2_02576	0.43	-0.6
2,723,665	+		EFB2_02576	0.43	+1.0
2,723,665	+		EFB2_02576	0.43	-0.6
2,723,666	-		EFB2_02576	0.43	+0.6
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	-0.3
2,723,666	-		EFB2_02576	0.43	+0.7
2,723,666	-		EFB2_02576	0.43	+0.5
2,723,666	-		EFB2_02576	0.43	+1.6
2,723,666	-		EFB2_02576	0.43	+0.7
2,723,666	-		EFB2_02576	0.43	-1.0
2,723,666	-		EFB2_02576	0.43	+1.0
2,723,666	-		EFB2_02576	0.43	-0.0
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	-0.4
2,723,666	-		EFB2_02576	0.43	+3.5
2,723,666	-		EFB2_02576	0.43	-1.0
2,723,666	-		EFB2_02576	0.43	+1.8
2,723,666	-		EFB2_02576	0.43	-0.2
2,723,666	-		EFB2_02576	0.43	-0.7
2,723,666	-		EFB2_02576	0.43	-0.2
2,723,666	-		EFB2_02576	0.43	+1.0
2,723,666	-		EFB2_02576	0.43	+0.3
2,723,666	-		EFB2_02576	0.43	-0.6
2,723,666	-		EFB2_02576	0.43	-0.0
2,723,669	+		EFB2_02576	0.43	-0.9
2,723,669	+		EFB2_02576	0.43	-1.3
2,723,669	+		EFB2_02576	0.43	-0.3
2,723,669	+		EFB2_02576	0.43	+3.1
2,723,669	+		EFB2_02576	0.43	-2.3
2,723,669	+		EFB2_02576	0.43	+2.0
2,723,669	+		EFB2_02576	0.43	+0.3
2,723,669	+		EFB2_02576	0.43	-0.4
2,723,669	+		EFB2_02576	0.43	+1.3
2,723,669	+		EFB2_02576	0.43	+1.2
2,723,669	+		EFB2_02576	0.43	+1.2
2,723,669	+		EFB2_02576	0.43	-0.0
2,723,669	+		EFB2_02576	0.43	+3.1
2,723,669	+		EFB2_02576	0.43	+2.2
2,723,670	-		EFB2_02576	0.43	-0.0
2,723,670	-		EFB2_02576	0.43	-1.1
2,723,670	-		EFB2_02576	0.43	-0.4
2,723,670	-		EFB2_02576	0.43	-1.2
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