Strain Fitness in Escherichia fergusonii Becca around EFB2_02364

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,498,532	-		EFB2_02363	0.53	-0.7
2,498,578	-		EFB2_02363	0.55	+1.1
2,498,701	+		EFB2_02363	0.61	+1.3
2,498,702	-		EFB2_02363	0.61	-1.2
2,498,702	-		EFB2_02363	0.61	+1.4
2,498,702	-		EFB2_02363	0.61	+0.2
2,498,702	-		EFB2_02363	0.61	-1.6
2,498,724	+		EFB2_02363	0.62	+1.8
2,498,725	-		EFB2_02363	0.62	+0.0
2,498,725	-		EFB2_02363	0.62	-0.8
2,498,725	-		EFB2_02363	0.62	+1.2
2,498,725	-		EFB2_02363	0.62	+0.1
2,498,728	-		EFB2_02363	0.62	+0.0
2,498,782	+		EFB2_02363	0.64	-0.8
2,498,782	+		EFB2_02363	0.64	+1.8
2,498,782	+		EFB2_02363	0.64	-0.2
2,498,783	-		EFB2_02363	0.64	-0.1
2,498,783	-		EFB2_02363	0.64	-0.2
2,498,783	-		EFB2_02363	0.64	-1.6
2,498,783	-		EFB2_02363	0.64	-0.7
2,498,783	-		EFB2_02363	0.64	+0.6
2,498,783	-		EFB2_02363	0.64	-0.3
2,498,783	-		EFB2_02363	0.64	+1.0
2,498,788	-		EFB2_02363	0.65	+0.3
2,498,788	-		EFB2_02363	0.65	+3.0
2,498,795	+		EFB2_02363	0.65	+2.3
2,498,796	-		EFB2_02363	0.65	+0.4
2,498,812	+		EFB2_02363	0.66	+1.2
2,498,812	+		EFB2_02363	0.66	+2.0
2,498,813	-		EFB2_02363	0.66	-0.4
2,498,813	-		EFB2_02363	0.66	-1.5
2,498,895	-		EFB2_02363	0.70	-1.0
2,498,933	+		EFB2_02363	0.71	-0.9
2,498,933	+		EFB2_02363	0.71	+0.3
2,498,934	-		EFB2_02363	0.72	+0.5
2,498,934	-		EFB2_02363	0.72	+0.2
2,498,934	-		EFB2_02363	0.72	-1.4
2,498,934	-		EFB2_02363	0.72	-1.4
2,499,008	-		EFB2_02363	0.75	+1.8
2,499,008	-		EFB2_02363	0.75	-1.6
2,499,008	-		EFB2_02363	0.75	-1.5
2,499,008	-		EFB2_02363	0.75	+0.0
2,499,008	-		EFB2_02363	0.75	-0.7
2,499,051	-		EFB2_02363	0.77	-1.1
2,499,051	-		EFB2_02363	0.77	-1.2
2,499,136	-		EFB2_02363	0.81	+0.0
2,499,136	-		EFB2_02363	0.81	+0.5
2,499,136	-		EFB2_02363	0.81	-1.4
2,499,136	-		EFB2_02363	0.81	-1.3
2,499,222	+		EFB2_02363	0.85	+0.8
2,499,222	+		EFB2_02363	0.85	+1.3
2,499,223	-		EFB2_02363	0.85	+0.1
2,499,223	-		EFB2_02363	0.85	+0.5
2,499,223	-		EFB2_02363	0.85	-1.8
2,499,223	-		EFB2_02363	0.85	+0.0
2,499,223	-		EFB2_02363	0.85	+0.3
2,499,223	-		EFB2_02363	0.85	-0.7
2,499,232	-		EFB2_02363	0.86	-1.7
2,499,232	-		EFB2_02363	0.86	-0.5
2,499,232	-		EFB2_02363	0.86	+0.5
2,499,232	-		EFB2_02363	0.86	+0.5
2,499,251	+		EFB2_02363	0.86	+1.5
2,499,252	-		EFB2_02363	0.86	-1.6
2,499,252	-		EFB2_02363	0.86	+1.0
2,499,252	-		EFB2_02363	0.86	-1.4
2,499,346	-				-0.0
2,499,346	-				-1.0
2,499,346	-				-1.5
2,499,346	-				-2.2
2,499,346	-				+1.8
2,499,389	+				-1.2
2,499,389	+				-0.1
2,499,389	+				+1.3
2,499,389	+				-1.7
2,499,389	+				-0.2
2,499,389	+				+0.3
2,499,389	+				-0.1
2,499,389	+				-0.6
2,499,390	-				-0.6
2,499,390	-				-0.4
2,499,390	-				+1.3
2,499,390	-				+0.0
2,499,390	-				+0.5
2,499,390	-				-2.0
2,499,390	-				+0.8
2,499,430	-				-0.6
2,499,533	+				-2.2
2,499,534	-				-0.7
2,499,534	-				-0.1
2,499,558	+				-1.1
2,499,656	-		EFB2_02364	0.21	-0.0
2,499,656	-		EFB2_02364	0.21	+0.3
2,499,656	-		EFB2_02364	0.21	-0.9
2,499,656	-		EFB2_02364	0.21	-0.6
2,499,656	-		EFB2_02364	0.21	-0.7
2,499,690	+		EFB2_02364	0.27	+2.2
2,499,691	-		EFB2_02364	0.27	-0.5
2,499,691	-		EFB2_02364	0.27	-1.5
2,499,691	-		EFB2_02364	0.27	-2.0
2,499,691	-		EFB2_02364	0.27	-1.3
2,499,691	-		EFB2_02364	0.27	+0.3
2,499,691	-		EFB2_02364	0.27	-1.6
2,499,742	-		EFB2_02364	0.36	+0.3
2,499,747	+		EFB2_02364	0.37	-0.2
2,499,748	-		EFB2_02364	0.37	-2.6
2,499,748	-		EFB2_02364	0.37	-0.4
2,499,748	-		EFB2_02364	0.37	-0.1
2,499,748	-		EFB2_02364	0.37	-1.8
2,499,760	-		EFB2_02364	0.39	-2.8
2,499,760	-		EFB2_02364	0.39	+0.2
2,499,760	-		EFB2_02364	0.39	-1.1
2,499,760	-		EFB2_02364	0.39	-0.5
2,499,760	-		EFB2_02364	0.39	+1.8
2,499,766	-		EFB2_02364	0.40	-0.8
2,499,766	-		EFB2_02364	0.40	+1.3
2,499,803	-		EFB2_02364	0.47	-1.0
2,499,803	-		EFB2_02364	0.47	+0.2
2,499,844	-		EFB2_02364	0.54	-0.5
2,499,951	-		EFB2_02364	0.72	-0.1
2,500,101	+				+4.1
2,500,112	-				-2.7
2,500,112	-				-1.2
2,500,112	-				+1.0
2,500,131	-				-0.4
2,500,140	-				-0.6
2,500,154	+				+0.5
2,500,154	+				+2.3
2,500,154	+				-2.3
2,500,155	-				+1.0
2,500,155	-				-0.8
2,500,155	-				+0.8
2,500,155	-				-2.0
2,500,171	-		EFB2_02365	0.10	+0.8
2,500,171	-		EFB2_02365	0.10	+2.5
2,500,171	-		EFB2_02365	0.10	-0.6
2,500,285	+		EFB2_02365	0.30	-0.2
2,500,285	+		EFB2_02365	0.30	-0.9
2,500,359	-		EFB2_02365	0.43	+0.0
2,500,359	-		EFB2_02365	0.43	-0.7
2,500,359	-		EFB2_02365	0.43	+1.2
2,500,364	+		EFB2_02365	0.44	+1.8
2,500,365	-		EFB2_02365	0.44	+0.8
2,500,394	-		EFB2_02365	0.49	+1.3
2,500,399	-		EFB2_02365	0.50	-1.2
2,500,399	-		EFB2_02365	0.50	-1.4
2,500,399	-		EFB2_02365	0.50	-0.0
2,500,480	+		EFB2_02365	0.64	-1.7
2,500,480	+		EFB2_02365	0.64	+1.6
2,500,480	+		EFB2_02365	0.64	-0.2
2,500,481	-		EFB2_02365	0.64	-0.4
2,500,481	-		EFB2_02365	0.64	+0.8
2,500,481	-		EFB2_02365	0.64	-1.7
2,500,481	-		EFB2_02365	0.64	-0.1
2,500,481	-		EFB2_02365	0.64	+0.2
2,500,481	-		EFB2_02365	0.64	+1.2
2,500,481	-		EFB2_02365	0.64	-0.9
2,500,481	-		EFB2_02365	0.64	+1.0
2,500,481	-		EFB2_02365	0.64	+0.6
2,500,481	-		EFB2_02365	0.64	-1.4
2,500,481	-		EFB2_02365	0.64	-1.7
2,500,481	-		EFB2_02365	0.64	+1.0
2,500,482	+		EFB2_02365	0.64	-0.2
2,500,483	-		EFB2_02365	0.64	+0.6
2,500,483	-		EFB2_02365	0.64	-0.7
2,500,483	-		EFB2_02365	0.64	+3.2
2,500,483	-		EFB2_02365	0.64	+1.6
2,500,483	-		EFB2_02365	0.64	-2.1
2,500,490	+		EFB2_02365	0.65	-0.7
2,500,491	-		EFB2_02365	0.65	-0.1
2,500,491	-		EFB2_02365	0.65	-1.7
2,500,491	-		EFB2_02365	0.65	+1.8
2,500,491	-		EFB2_02365	0.65	+1.2
2,500,532	+		EFB2_02365	0.73	-1.0
2,500,533	-		EFB2_02365	0.73	+0.5
2,500,533	-		EFB2_02365	0.73	-2.4
2,500,533	-		EFB2_02365	0.73	+0.5
2,500,608	-		EFB2_02365	0.86	-3.0
2,500,639	-				+1.8
2,500,646	+				+2.2
2,500,646	+				+0.3
2,500,646	+				-1.9
2,500,647	-				+0.5
2,500,647	-				-0.9
2,500,656	+				-0.6
2,500,657	-				+0.2
2,500,657	-				+2.5
2,500,674	+				+0.8
2,500,675	-				+1.3
2,500,675	-				+1.8
2,500,681	+				+1.0
2,500,681	+				+3.3
2,500,682	-				+0.2
2,500,682	-				+0.0
2,500,720	-				+1.1
2,500,754	+				+2.1
2,500,755	-				+0.5
2,500,755	-				+2.4
2,500,760	+				+2.6
2,500,760	+				-1.1
2,500,760	+				+0.5
2,500,760	+				-0.2
2,500,760	+				+1.9
2,500,760	+				-1.5
2,500,761	-				+0.5
2,500,761	-				+0.2
2,500,761	-				+0.6
2,500,761	-				-0.5
2,500,761	-				+1.0
2,500,761	-				+0.8
2,500,761	-				-1.5
2,500,766	+				-1.0
2,500,766	+				+0.2
2,500,767	-				+0.1
2,500,767	-				-1.3
2,500,767	-				+2.9
2,500,767	-				+1.0
2,500,770	-				+0.1
2,500,814	+		EFB2_02366	0.10	-1.2
2,500,845	+		EFB2_02366	0.17	+1.4
2,500,845	+		EFB2_02366	0.17	-1.5
2,500,845	+		EFB2_02366	0.17	-1.7
2,500,845	+		EFB2_02366	0.17	+0.9
2,500,845	+		EFB2_02366	0.17	-0.9
2,500,845	+		EFB2_02366	0.17	+0.3
2,500,846	-		EFB2_02366	0.18	-0.8
2,500,846	-		EFB2_02366	0.18	+0.5
2,500,846	-		EFB2_02366	0.18	-0.5
2,500,846	-		EFB2_02366	0.18	+2.3
2,500,846	-		EFB2_02366	0.18	-1.5
2,500,868	-		EFB2_02366	0.23	-1.4
2,500,880	-		EFB2_02366	0.25	+0.0
2,500,880	-		EFB2_02366	0.25	+1.3
2,500,923	+		EFB2_02366	0.35	+2.8
2,500,923	+		EFB2_02366	0.35	-0.8
2,500,923	+		EFB2_02366	0.35	+2.4
2,500,923	+		EFB2_02366	0.35	+1.0
2,500,924	-		EFB2_02366	0.35	-0.5
2,500,924	-		EFB2_02366	0.35	-1.7
2,500,935	+		EFB2_02366	0.38	-1.2
2,500,935	+		EFB2_02366	0.38	+3.3
2,500,935	+		EFB2_02366	0.38	-0.4
2,500,936	-		EFB2_02366	0.38	+0.2
2,500,936	-		EFB2_02366	0.38	-0.5
2,500,936	-		EFB2_02366	0.38	+0.2
2,500,936	-		EFB2_02366	0.38	+1.3
2,500,936	-		EFB2_02366	0.38	+0.0
2,500,936	-		EFB2_02366	0.38	+3.5
2,500,938	+		EFB2_02366	0.39	+2.2
2,500,938	+		EFB2_02366	0.39	+0.4
2,500,938	+		EFB2_02366	0.39	+0.8
2,500,938	+		EFB2_02366	0.39	+1.0
2,500,938	+		EFB2_02366	0.39	-0.3
2,500,939	-		EFB2_02366	0.39	+1.1
2,500,939	-		EFB2_02366	0.39	+2.0
2,500,939	-		EFB2_02366	0.39	-0.1
2,500,939	-		EFB2_02366	0.39	-1.7
2,500,939	-		EFB2_02366	0.39	-1.5
2,500,939	-		EFB2_02366	0.39	+0.6
2,500,939	-		EFB2_02366	0.39	+1.9
2,500,939	-		EFB2_02366	0.39	-0.8
2,500,940	+		EFB2_02366	0.39	+5.3
2,500,940	+		EFB2_02366	0.39	+0.3
2,500,940	+		EFB2_02366	0.39	+0.0
2,500,940	+		EFB2_02366	0.39	-0.2
2,500,940	+		EFB2_02366	0.39	-0.5
2,500,940	+		EFB2_02366	0.39	+1.3
2,500,941	-		EFB2_02366	0.39	+1.0
2,500,941	-		EFB2_02366	0.39	+2.3
2,500,941	-		EFB2_02366	0.39	+0.3
2,500,941	-		EFB2_02366	0.39	+0.3
2,500,941	-		EFB2_02366	0.39	+0.3
2,500,941	-		EFB2_02366	0.39	+3.3
2,500,941	-		EFB2_02366	0.39	+0.6
2,500,941	-		EFB2_02366	0.39	-0.6
2,500,941	-		EFB2_02366	0.39	+0.4
2,500,941	-		EFB2_02366	0.39	+0.3
2,500,941	-		EFB2_02366	0.39	+0.7
2,500,941	-		EFB2_02366	0.39	+0.7
2,500,947	+		EFB2_02366	0.41	+2.3
2,500,997	+		EFB2_02366	0.52	+0.3
2,500,998	-		EFB2_02366	0.52	-2.3
2,500,998	-		EFB2_02366	0.52	-1.7
2,500,998	-		EFB2_02366	0.52	+1.3
2,500,998	-		EFB2_02366	0.52	-2.2
2,500,998	-		EFB2_02366	0.52	+1.2
2,500,998	-		EFB2_02366	0.52	-1.2
2,500,998	-		EFB2_02366	0.52	+0.2
2,501,000	+		EFB2_02366	0.53	+3.3
2,501,000	+		EFB2_02366	0.53	+0.2
2,501,000	+		EFB2_02366	0.53	+0.3
2,501,000	+		EFB2_02366	0.53	-0.7
2,501,001	-		EFB2_02366	0.53	-1.7
2,501,001	-		EFB2_02366	0.53	+0.7
2,501,001	-		EFB2_02366	0.53	-2.1
2,501,020	-		EFB2_02366	0.57	-0.6
2,501,022	+		EFB2_02366	0.58	-1.0
2,501,022	+		EFB2_02366	0.58	+0.3
2,501,023	-		EFB2_02366	0.58	+1.0
2,501,023	-		EFB2_02366	0.58	-1.5
2,501,023	-		EFB2_02366	0.58	-1.6
2,501,023	-		EFB2_02366	0.58	-1.4
2,501,023	-		EFB2_02366	0.58	+0.6
2,501,096	-		EFB2_02366	0.74	+0.8
2,501,108	+		EFB2_02366	0.77	+1.2
2,501,108	+		EFB2_02366	0.77	-0.5
2,501,108	+		EFB2_02366	0.77	+1.0
2,501,109	-		EFB2_02366	0.77	-1.2
2,501,109	-		EFB2_02366	0.77	+2.9
2,501,109	-		EFB2_02366	0.77	+0.8
2,501,109	-		EFB2_02366	0.77	+1.2