Strain Fitness in Escherichia fergusonii Becca around EFB2_02055

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,204,969	-				+1.3
2,205,121	+				+2.7
2,205,121	+				-1.6
2,205,121	+				+1.2
2,205,121	+				-1.9
2,205,122	-				-1.8
2,205,122	-				-3.0
2,205,122	-				+0.8
2,205,122	-				+1.1
2,205,132	+		EFB2_02054	0.11	+1.1
2,205,177	+		EFB2_02054	0.15	-0.0
2,205,177	+		EFB2_02054	0.15	+1.4
2,205,178	-		EFB2_02054	0.16	-0.9
2,205,214	+		EFB2_02054	0.19	+3.1
2,205,215	-		EFB2_02054	0.20	+2.4
2,205,215	-		EFB2_02054	0.20	-0.7
2,205,215	-		EFB2_02054	0.20	+0.5
2,205,215	-		EFB2_02054	0.20	+0.1
2,205,215	-		EFB2_02054	0.20	-1.5
2,205,264	+		EFB2_02054	0.25	-1.0
2,205,264	+		EFB2_02054	0.25	+1.9
2,205,265	-		EFB2_02054	0.25	+0.3
2,205,267	+		EFB2_02054	0.25	-1.6
2,205,301	+		EFB2_02054	0.29	-0.1
2,205,301	+		EFB2_02054	0.29	-0.7
2,205,301	+		EFB2_02054	0.29	+1.3
2,205,301	+		EFB2_02054	0.29	-0.6
2,205,301	+		EFB2_02054	0.29	+1.6
2,205,301	+		EFB2_02054	0.29	+0.9
2,205,301	+		EFB2_02054	0.29	+0.5
2,205,301	+		EFB2_02054	0.29	+0.7
2,205,301	+		EFB2_02054	0.29	-0.6
2,205,301	+		EFB2_02054	0.29	-1.0
2,205,301	+		EFB2_02054	0.29	+3.3
2,205,301	+		EFB2_02054	0.29	+2.1
2,205,301	+		EFB2_02054	0.29	-0.0
2,205,301	+		EFB2_02054	0.29	-1.3
2,205,301	+		EFB2_02054	0.29	+0.8
2,205,302	-		EFB2_02054	0.29	-0.6
2,205,302	-		EFB2_02054	0.29	+2.6
2,205,302	-		EFB2_02054	0.29	+2.7
2,205,302	-		EFB2_02054	0.29	+3.6
2,205,302	-		EFB2_02054	0.29	+0.5
2,205,302	-		EFB2_02054	0.29	-0.6
2,205,327	+		EFB2_02054	0.32	-0.0
2,205,327	+		EFB2_02054	0.32	+0.6
2,205,328	-		EFB2_02054	0.32	+2.3
2,205,328	-		EFB2_02054	0.32	+0.2
2,205,437	+		EFB2_02054	0.43	+0.9
2,205,438	-		EFB2_02054	0.44	-0.8
2,205,438	-		EFB2_02054	0.44	+1.3
2,205,438	-		EFB2_02054	0.44	-1.3
2,205,476	+		EFB2_02054	0.48	+0.9
2,205,476	+		EFB2_02054	0.48	+1.4
2,205,476	+		EFB2_02054	0.48	+2.7
2,205,476	+		EFB2_02054	0.48	+2.2
2,205,476	+		EFB2_02054	0.48	+0.6
2,205,476	+		EFB2_02054	0.48	-2.6
2,205,476	+		EFB2_02054	0.48	+0.9
2,205,476	+		EFB2_02054	0.48	+0.7
2,205,476	+		EFB2_02054	0.48	+0.4
2,205,476	+		EFB2_02054	0.48	+0.8
2,205,477	-		EFB2_02054	0.48	+1.7
2,205,477	-		EFB2_02054	0.48	+1.8
2,205,477	-		EFB2_02054	0.48	+1.1
2,205,477	-		EFB2_02054	0.48	-0.5
2,205,477	-		EFB2_02054	0.48	+1.8
2,205,477	-		EFB2_02054	0.48	-3.1
2,205,477	-		EFB2_02054	0.48	-0.0
2,205,480	+		EFB2_02054	0.48	-0.6
2,205,480	+		EFB2_02054	0.48	-0.0
2,205,480	+		EFB2_02054	0.48	+2.1
2,205,480	+		EFB2_02054	0.48	+1.0
2,205,480	+		EFB2_02054	0.48	+2.1
2,205,480	+		EFB2_02054	0.48	+0.7
2,205,480	+		EFB2_02054	0.48	+2.1
2,205,480	+		EFB2_02054	0.48	-0.7
2,205,480	+		EFB2_02054	0.48	-0.2
2,205,481	-		EFB2_02054	0.48	+2.1
2,205,481	-		EFB2_02054	0.48	+1.6
2,205,481	-		EFB2_02054	0.48	+0.3
2,205,481	-		EFB2_02054	0.48	+1.5
2,205,481	-		EFB2_02054	0.48	+1.8
2,205,481	-		EFB2_02054	0.48	+1.4
2,205,517	-		EFB2_02054	0.52	-1.8
2,205,517	-		EFB2_02054	0.52	+0.5
2,205,544	+		EFB2_02054	0.55	+0.9
2,205,544	+		EFB2_02054	0.55	+3.1
2,205,544	+		EFB2_02054	0.55	+2.0
2,205,544	+		EFB2_02054	0.55	+2.6
2,205,544	+		EFB2_02054	0.55	-1.0
2,205,544	+		EFB2_02054	0.55	-0.9
2,205,544	+		EFB2_02054	0.55	-1.0
2,205,544	+		EFB2_02054	0.55	+2.6
2,205,544	+		EFB2_02054	0.55	-1.0
2,205,544	+		EFB2_02054	0.55	-0.9
2,205,544	+		EFB2_02054	0.55	+1.0
2,205,544	+		EFB2_02054	0.55	+1.8
2,205,544	+		EFB2_02054	0.55	-0.4
2,205,544	+		EFB2_02054	0.55	-1.5
2,205,544	+		EFB2_02054	0.55	-0.6
2,205,545	-		EFB2_02054	0.55	-0.0
2,205,545	-		EFB2_02054	0.55	+1.5
2,205,545	-		EFB2_02054	0.55	+0.8
2,205,545	-		EFB2_02054	0.55	+1.6
2,205,545	-		EFB2_02054	0.55	+0.8
2,205,545	-		EFB2_02054	0.55	+1.2
2,205,545	-		EFB2_02054	0.55	+0.3
2,205,545	-		EFB2_02054	0.55	+0.4
2,205,545	-		EFB2_02054	0.55	+1.5
2,205,545	-		EFB2_02054	0.55	+2.7
2,205,546	+		EFB2_02054	0.55	+2.7
2,205,546	+		EFB2_02054	0.55	+2.1
2,205,546	+		EFB2_02054	0.55	+1.5
2,205,546	+		EFB2_02054	0.55	-0.2
2,205,546	+		EFB2_02054	0.55	+0.5
2,205,546	+		EFB2_02054	0.55	+2.1
2,205,546	+		EFB2_02054	0.55	+0.4
2,205,546	+		EFB2_02054	0.55	+0.1
2,205,546	+		EFB2_02054	0.55	+0.5
2,205,547	-		EFB2_02054	0.55	+4.1
2,205,547	-		EFB2_02054	0.55	+0.5
2,205,547	-		EFB2_02054	0.55	+1.3
2,205,547	-		EFB2_02054	0.55	+1.5
2,205,547	-		EFB2_02054	0.55	+0.7
2,205,588	+		EFB2_02054	0.60	+1.7
2,205,588	+		EFB2_02054	0.60	+1.0
2,205,589	-		EFB2_02054	0.60	-1.3
2,205,600	+		EFB2_02054	0.61	-0.5
2,205,600	+		EFB2_02054	0.61	-1.0
2,205,600	+		EFB2_02054	0.61	-0.7
2,205,600	+		EFB2_02054	0.61	+1.2
2,205,600	+		EFB2_02054	0.61	-1.6
2,205,601	-		EFB2_02054	0.61	+2.6
2,205,601	-		EFB2_02054	0.61	-0.7
2,205,601	-		EFB2_02054	0.61	-1.3
2,205,601	-		EFB2_02054	0.61	-1.0
2,205,601	-		EFB2_02054	0.61	-0.5
2,205,601	-		EFB2_02054	0.61	-2.2
2,205,603	+		EFB2_02054	0.61	-1.2
2,205,603	+		EFB2_02054	0.61	-1.3
2,205,603	+		EFB2_02054	0.61	+1.0
2,205,634	+		EFB2_02054	0.65	-1.9
2,205,656	-		EFB2_02054	0.67	+1.6
2,205,656	-		EFB2_02054	0.67	+0.1
2,205,656	-		EFB2_02054	0.67	-2.5
2,205,657	+		EFB2_02054	0.67	+0.7
2,205,657	+		EFB2_02054	0.67	+2.0
2,205,657	+		EFB2_02054	0.67	+0.3
2,205,657	+		EFB2_02054	0.67	+0.5
2,205,657	+		EFB2_02054	0.67	-0.8
2,205,657	+		EFB2_02054	0.67	+0.8
2,205,657	+		EFB2_02054	0.67	-1.0
2,205,657	+		EFB2_02054	0.67	-0.9
2,205,657	+		EFB2_02054	0.67	-0.7
2,205,657	+		EFB2_02054	0.67	-1.0
2,205,657	+		EFB2_02054	0.67	-0.6
2,205,657	+		EFB2_02054	0.67	+1.2
2,205,657	+		EFB2_02054	0.67	-1.3
2,205,657	+		EFB2_02054	0.67	-0.0
2,205,657	+		EFB2_02054	0.67	-0.7
2,205,657	+		EFB2_02054	0.67	-1.7
2,205,657	+		EFB2_02054	0.67	+1.3
2,205,657	+		EFB2_02054	0.67	-0.7
2,205,657	+		EFB2_02054	0.67	-1.0
2,205,657	+		EFB2_02054	0.67	-1.7
2,205,657	+		EFB2_02054	0.67	+1.8
2,205,657	+		EFB2_02054	0.67	+2.1
2,205,657	+		EFB2_02054	0.67	+0.9
2,205,657	+		EFB2_02054	0.67	-0.0
2,205,657	+		EFB2_02054	0.67	+0.7
2,205,657	+		EFB2_02054	0.67	-0.0
2,205,657	+		EFB2_02054	0.67	-1.0
2,205,657	+		EFB2_02054	0.67	-0.6
2,205,657	+		EFB2_02054	0.67	-0.1
2,205,657	+		EFB2_02054	0.67	+0.8
2,205,657	+		EFB2_02054	0.67	-0.6
2,205,657	+		EFB2_02054	0.67	+0.1
2,205,657	+		EFB2_02054	0.67	+0.1
2,205,657	+		EFB2_02054	0.67	+0.8
2,205,657	+		EFB2_02054	0.67	+2.5
2,205,657	+		EFB2_02054	0.67	+1.4
2,205,657	+		EFB2_02054	0.67	+2.0
2,205,657	+		EFB2_02054	0.67	-0.6
2,205,657	+		EFB2_02054	0.67	+0.8
2,205,658	-		EFB2_02054	0.67	+0.7
2,205,658	-		EFB2_02054	0.67	+0.1
2,205,658	-		EFB2_02054	0.67	+0.3
2,205,658	-		EFB2_02054	0.67	+2.5
2,205,658	-		EFB2_02054	0.67	+0.5
2,205,658	-		EFB2_02054	0.67	-0.3
2,205,658	-		EFB2_02054	0.67	-0.8
2,205,658	-		EFB2_02054	0.67	+3.1
2,205,658	-		EFB2_02054	0.67	+0.8
2,205,658	-		EFB2_02054	0.67	+0.5
2,205,658	-		EFB2_02054	0.67	+1.4
2,205,658	-		EFB2_02054	0.67	+0.8
2,205,658	-		EFB2_02054	0.67	+0.4
2,205,658	-		EFB2_02054	0.67	-1.6
2,205,658	-		EFB2_02054	0.67	+1.7
2,205,658	-		EFB2_02054	0.67	-0.9
2,205,658	-		EFB2_02054	0.67	-1.3
2,205,658	-		EFB2_02054	0.67	+0.1
2,205,658	-		EFB2_02054	0.67	+1.9
2,205,658	-		EFB2_02054	0.67	-0.0
2,205,658	-		EFB2_02054	0.67	-0.2
2,205,658	-		EFB2_02054	0.67	+0.1
2,205,740	+		EFB2_02054	0.76	+1.4
2,205,740	+		EFB2_02054	0.76	-0.0
2,205,740	+		EFB2_02054	0.76	+1.0
2,205,740	+		EFB2_02054	0.76	-0.2
2,205,741	-		EFB2_02054	0.76	-0.2
2,205,741	-		EFB2_02054	0.76	-0.5
2,205,741	-		EFB2_02054	0.76	-1.2
2,205,741	-		EFB2_02054	0.76	+0.8
2,205,741	-		EFB2_02054	0.76	+0.5
2,205,825	-		EFB2_02054	0.85	-1.9
2,205,975	+				-0.2
2,205,976	+				+3.1
2,205,976	+				-2.2
2,205,976	+				+1.7
2,205,976	+				+0.5
2,205,976	+				-0.8
2,205,976	+				-1.8
2,205,976	+				+0.8
2,205,976	+				+3.0
2,205,976	+				-1.4
2,205,976	+				-0.3
2,205,976	+				+0.0
2,205,976	+				-1.6
2,205,977	-				-2.0
2,205,977	-				+0.1
2,205,977	-				-0.9
2,205,977	-				+2.2
2,205,977	-				+1.9
2,205,977	-				+0.8
2,205,977	-				-1.2
2,205,977	-				-1.2
2,205,977	-				+0.1
2,205,977	-				+0.1
2,205,977	-				+1.0
2,205,977	-				+2.4
2,205,977	-				+0.6
2,205,978	+				+2.4
2,205,978	+				+1.5
2,205,978	+				+0.5
2,205,978	+				-1.5
2,205,978	+				-2.0
2,205,978	+				-2.0
2,205,978	+				-2.3
2,205,978	+				-1.2
2,205,978	+				+0.5
2,205,978	+				-0.9
2,205,978	+				-1.7
2,205,978	+				-0.6
2,205,978	+				-0.9
2,205,978	+				+0.6
2,205,978	+				+0.9
2,205,978	+				+0.4
2,205,978	+				+0.9
2,205,979	-				-1.6
2,205,979	-				+2.8
2,205,979	-				+0.1
2,205,979	-				+1.6
2,205,979	-				+0.4
2,205,979	-				-1.0
2,205,979	-				-1.9
2,205,979	-				+2.6
2,205,979	-				+0.3
2,205,979	-				-1.1
2,205,979	-				-0.6
2,205,979	-				-0.9
2,206,030	+				+0.8
2,206,030	+				+0.5
2,206,031	-				+4.7
2,206,031	-				+0.4
2,206,031	-				-0.2
2,206,225	+		EFB2_02055	0.13	+1.4
2,206,225	+		EFB2_02055	0.13	+0.3
2,206,226	-		EFB2_02055	0.13	+0.3
2,206,226	-		EFB2_02055	0.13	+1.7
2,206,226	-		EFB2_02055	0.13	+0.5
2,206,277	+		EFB2_02055	0.16	-0.1
2,206,278	-		EFB2_02055	0.16	-1.0
2,206,278	-		EFB2_02055	0.16	-1.0
2,206,278	-		EFB2_02055	0.16	-2.0
2,206,279	+		EFB2_02055	0.16	+1.3
2,206,279	+		EFB2_02055	0.16	+1.5
2,206,279	+		EFB2_02055	0.16	+1.7
2,206,280	-		EFB2_02055	0.16	+0.4
2,206,280	-		EFB2_02055	0.16	+0.3
2,206,280	-		EFB2_02055	0.16	-0.7
2,206,280	-		EFB2_02055	0.16	-0.0
2,206,280	-		EFB2_02055	0.16	-0.2
2,206,316	+		EFB2_02055	0.18	+0.1
2,206,316	+		EFB2_02055	0.18	-0.0
2,206,317	-		EFB2_02055	0.18	+1.8
2,206,317	-		EFB2_02055	0.18	+1.1
2,206,317	-		EFB2_02055	0.18	-0.3
2,206,317	-		EFB2_02055	0.18	+1.2
2,206,318	+		EFB2_02055	0.18	+0.5
2,206,318	+		EFB2_02055	0.18	-0.8
2,206,318	+		EFB2_02055	0.18	+2.2
2,206,318	+		EFB2_02055	0.18	-2.2
2,206,318	+		EFB2_02055	0.18	-0.5
2,206,319	-		EFB2_02055	0.18	+1.5
2,206,319	-		EFB2_02055	0.18	-0.5
2,206,319	-		EFB2_02055	0.18	-0.0
2,206,319	-		EFB2_02055	0.18	-0.2
2,206,319	-		EFB2_02055	0.18	+2.7
2,206,319	-		EFB2_02055	0.18	-0.3
2,206,319	-		EFB2_02055	0.18	+0.3
2,206,319	-		EFB2_02055	0.18	-0.0
2,206,347	+		EFB2_02055	0.19	-0.5
2,206,347	+		EFB2_02055	0.19	+2.1
2,206,348	-		EFB2_02055	0.19	-1.0
2,206,386	+		EFB2_02055	0.21	+0.1
2,206,387	-		EFB2_02055	0.21	-0.0
2,206,429	+		EFB2_02055	0.24	+2.1
2,206,429	+		EFB2_02055	0.24	-0.5
2,206,430	-		EFB2_02055	0.24	-0.2
2,206,430	-		EFB2_02055	0.24	-1.1
2,206,437	+		EFB2_02055	0.24	+2.5
2,206,451	-		EFB2_02055	0.25	+0.3
2,206,451	-		EFB2_02055	0.25	-0.5
2,206,451	-		EFB2_02055	0.25	+2.5
2,206,518	+		EFB2_02055	0.28	+1.2
2,206,518	+		EFB2_02055	0.28	-1.2
2,206,557	+		EFB2_02055	0.30	-0.2
2,206,557	+		EFB2_02055	0.30	+2.0
2,206,557	+		EFB2_02055	0.30	-0.3
2,206,557	+		EFB2_02055	0.30	+1.1
2,206,558	-		EFB2_02055	0.30	-0.2
2,206,558	-		EFB2_02055	0.30	-0.0
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2,207,760	+				+4.1
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