Strain Fitness in Escherichia fergusonii Becca around EFB2_01725

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,820,635	-				+2.3
1,820,641	+				-2.3
1,820,641	+				+0.6
1,820,641	+				-1.0
1,820,641	+				+0.9
1,820,642	-				-1.4
1,820,654	+				+1.9
1,820,655	-				+1.2
1,820,655	-				-1.8
1,820,674	+				+0.6
1,820,675	-				-2.1
1,820,756	+				+0.1
1,820,776	-				+0.9
1,820,820	+		EFB2_01724	0.14	-0.6
1,820,820	+		EFB2_01724	0.14	+1.0
1,820,821	-		EFB2_01724	0.14	-0.3
1,820,821	-		EFB2_01724	0.14	-0.4
1,820,856	+		EFB2_01724	0.18	+2.1
1,820,857	-		EFB2_01724	0.18	-1.6
1,820,865	+		EFB2_01724	0.19	-0.6
1,820,865	+		EFB2_01724	0.19	+0.7
1,820,865	+		EFB2_01724	0.19	-1.3
1,820,865	+		EFB2_01724	0.19	-1.0
1,820,865	+		EFB2_01724	0.19	-2.0
1,820,866	-		EFB2_01724	0.19	+0.9
1,820,866	-		EFB2_01724	0.19	-1.5
1,820,866	-		EFB2_01724	0.19	+0.9
1,820,892	-		EFB2_01724	0.21	+0.7
1,820,892	-		EFB2_01724	0.21	+0.1
1,820,925	+		EFB2_01724	0.25	-0.5
1,820,926	-		EFB2_01724	0.25	+2.2
1,820,926	-		EFB2_01724	0.25	+1.2
1,820,938	+		EFB2_01724	0.26	-1.1
1,820,938	+		EFB2_01724	0.26	-1.6
1,820,939	-		EFB2_01724	0.27	-0.3
1,820,940	+		EFB2_01724	0.27	+2.2
1,820,940	+		EFB2_01724	0.27	+3.4
1,820,941	-		EFB2_01724	0.27	-2.0
1,820,941	-		EFB2_01724	0.27	-0.1
1,820,979	+		EFB2_01724	0.31	+0.1
1,821,007	+		EFB2_01724	0.34	+0.9
1,821,008	-		EFB2_01724	0.34	-1.8
1,821,047	+		EFB2_01724	0.38	-2.4
1,821,047	+		EFB2_01724	0.38	+0.0
1,821,047	+		EFB2_01724	0.38	+0.6
1,821,048	-		EFB2_01724	0.38	-0.4
1,821,048	-		EFB2_01724	0.38	-1.2
1,821,075	+		EFB2_01724	0.41	-1.7
1,821,075	+		EFB2_01724	0.41	-1.1
1,821,075	+		EFB2_01724	0.41	-1.4
1,821,075	+		EFB2_01724	0.41	+0.2
1,821,075	+		EFB2_01724	0.41	-2.6
1,821,075	+		EFB2_01724	0.41	-0.6
1,821,076	-		EFB2_01724	0.42	-1.1
1,821,076	-		EFB2_01724	0.42	-1.0
1,821,076	-		EFB2_01724	0.42	+0.5
1,821,076	-		EFB2_01724	0.42	+0.6
1,821,238	+		EFB2_01724	0.59	+1.5
1,821,239	-		EFB2_01724	0.59	-0.3
1,821,246	+		EFB2_01724	0.60	+1.4
1,821,246	+		EFB2_01724	0.60	-1.8
1,821,417	+		EFB2_01724	0.79	+0.4
1,821,417	+		EFB2_01724	0.79	+2.4
1,821,417	+		EFB2_01724	0.79	-0.4
1,821,417	+		EFB2_01724	0.79	-1.2
1,821,417	+		EFB2_01724	0.79	+0.6
1,821,417	+		EFB2_01724	0.79	+1.5
1,821,417	+		EFB2_01724	0.79	-0.6
1,821,417	+		EFB2_01724	0.79	-0.5
1,821,417	+		EFB2_01724	0.79	+1.4
1,821,418	-		EFB2_01724	0.79	+1.1
1,821,418	-		EFB2_01724	0.79	+1.7
1,821,418	-		EFB2_01724	0.79	-0.3
1,821,418	-		EFB2_01724	0.79	+0.6
1,821,418	-		EFB2_01724	0.79	+0.9
1,821,418	-		EFB2_01724	0.79	+0.8
1,821,421	+		EFB2_01724	0.79	+1.0
1,821,421	+		EFB2_01724	0.79	+0.2
1,821,421	+		EFB2_01724	0.79	-0.1
1,821,421	+		EFB2_01724	0.79	-0.6
1,821,421	+		EFB2_01724	0.79	+0.9
1,821,421	+		EFB2_01724	0.79	+0.9
1,821,421	+		EFB2_01724	0.79	-1.1
1,821,421	+		EFB2_01724	0.79	+0.6
1,821,422	-		EFB2_01724	0.79	+1.9
1,821,422	-		EFB2_01724	0.79	-2.4
1,821,422	-		EFB2_01724	0.79	+1.0
1,821,422	-		EFB2_01724	0.79	-0.8
1,821,422	-		EFB2_01724	0.79	+0.3
1,821,422	-		EFB2_01724	0.79	-0.6
1,821,422	-		EFB2_01724	0.79	-0.5
1,821,583	+				+0.4
1,821,610	+				+0.0
1,821,625	+				+2.1
1,821,625	+				-0.3
1,821,625	+				-0.6
1,821,625	+				-0.3
1,821,625	+				+1.5
1,821,625	+				-0.4
1,821,626	-				-2.0
1,821,626	-				-0.4
1,821,626	-				-2.1
1,821,633	+				+0.6
1,821,636	+				-0.1
1,821,636	+				+0.8
1,821,636	+				-0.8
1,821,637	-				-1.6
1,821,637	-				-1.2
1,821,637	-				+0.6
1,821,637	-				+1.5
1,821,700	+				-0.9
1,821,700	+				-0.2
1,821,701	-				+0.6
1,821,701	-				-1.8
1,821,708	+				+0.9
1,821,708	+				+3.3
1,821,709	-				+0.9
1,821,709	-				-2.3
1,821,709	-				+0.1
1,821,709	-				-2.3
1,821,709	-				-2.4
1,821,709	-				-0.6
1,821,716	+				+1.3
1,821,717	-				-0.9
1,821,717	-				-0.0
1,821,811	-		EFB2_01725	0.17	-1.1
1,821,866	+		EFB2_01725	0.21	-0.3
1,821,866	+		EFB2_01725	0.21	+1.4
1,821,866	+		EFB2_01725	0.21	-0.9
1,821,866	+		EFB2_01725	0.21	-2.1
1,821,866	+		EFB2_01725	0.21	-0.5
1,821,867	-		EFB2_01725	0.21	-0.9
1,821,867	-		EFB2_01725	0.21	+0.7
1,821,867	-		EFB2_01725	0.21	-0.1
1,821,867	-		EFB2_01725	0.21	+0.1
1,821,867	-		EFB2_01725	0.21	-0.4
1,821,867	-		EFB2_01725	0.21	+1.5
1,821,919	-		EFB2_01725	0.26	+0.9
1,821,987	+		EFB2_01725	0.32	-2.9
1,822,041	+		EFB2_01725	0.36	-0.5
1,822,041	+		EFB2_01725	0.36	+0.6
1,822,041	+		EFB2_01725	0.36	-1.4
1,822,041	+		EFB2_01725	0.36	-3.0
1,822,041	+		EFB2_01725	0.36	-0.3
1,822,042	-		EFB2_01725	0.37	-1.1
1,822,042	-		EFB2_01725	0.37	-0.3
1,822,042	-		EFB2_01725	0.37	-0.4
1,822,042	-		EFB2_01725	0.37	+2.5
1,822,042	-		EFB2_01725	0.37	+0.4
1,822,075	+		EFB2_01725	0.39	-2.6
1,822,114	+		EFB2_01725	0.43	-0.7
1,822,114	+		EFB2_01725	0.43	+0.6
1,822,114	+		EFB2_01725	0.43	-0.8
1,822,194	-		EFB2_01725	0.50	-1.5
1,822,225	+		EFB2_01725	0.52	+1.9
1,822,293	-		EFB2_01725	0.58	-2.0
1,822,367	+		EFB2_01725	0.65	+0.1
1,822,368	-		EFB2_01725	0.65	-0.6
1,822,368	-		EFB2_01725	0.65	+0.4
1,822,411	+		EFB2_01725	0.68	+1.8
1,822,411	+		EFB2_01725	0.68	-1.9
1,822,411	+		EFB2_01725	0.68	+1.0
1,822,411	+		EFB2_01725	0.68	+0.6
1,822,411	+		EFB2_01725	0.68	+1.7
1,822,412	-		EFB2_01725	0.68	-1.4
1,822,442	+		EFB2_01725	0.71	-1.5
1,822,443	-		EFB2_01725	0.71	-1.2
1,822,550	+		EFB2_01725	0.80	+3.6
1,822,550	+		EFB2_01725	0.80	+1.8
1,822,551	-		EFB2_01725	0.80	+0.3
1,822,551	-		EFB2_01725	0.80	-0.2
1,822,659	-		EFB2_01725	0.90	-1.9
1,822,659	-		EFB2_01725	0.90	-1.9
1,822,676	+				+0.0
1,822,676	+				-0.3
1,822,677	-				-2.0
1,822,677	-				-0.6
1,822,677	-				+0.9
1,822,720	-				+1.1
1,822,767	+				+0.2
1,822,767	+				+1.3
1,822,767	+				+1.0
1,822,767	+				+0.4
1,822,767	+				-2.1
1,822,767	+				+1.2
1,822,767	+				+1.6
1,822,768	-				-3.2
1,822,768	-				+0.5
1,822,768	-				+0.5
1,822,780	+				-0.1
1,822,781	-				-2.2
1,822,870	+		EFB2_01726	0.11	-2.1
1,822,870	+		EFB2_01726	0.11	-1.9
1,822,870	+		EFB2_01726	0.11	+0.4
1,822,870	+		EFB2_01726	0.11	-0.6
1,822,870	+		EFB2_01726	0.11	-0.1
1,822,870	+		EFB2_01726	0.11	-1.2
1,822,870	+		EFB2_01726	0.11	-0.4
1,822,870	+		EFB2_01726	0.11	-0.6
1,822,870	+		EFB2_01726	0.11	+1.9
1,822,871	-		EFB2_01726	0.11	+0.7
1,822,871	-		EFB2_01726	0.11	+0.1
1,822,871	-		EFB2_01726	0.11	+0.6
1,822,871	-		EFB2_01726	0.11	-0.9
1,822,871	-		EFB2_01726	0.11	-0.2
1,822,885	+		EFB2_01726	0.13	+0.9
1,823,017	+		EFB2_01726	0.27	-2.1
1,823,018	-		EFB2_01726	0.27	-0.9
1,823,018	-		EFB2_01726	0.27	-1.4
1,823,018	-		EFB2_01726	0.27	+1.2
1,823,018	-		EFB2_01726	0.27	-1.1
1,823,018	-		EFB2_01726	0.27	+0.9
1,823,018	-		EFB2_01726	0.27	+2.9
1,823,018	-		EFB2_01726	0.27	-1.0
1,823,074	-		EFB2_01726	0.33	+0.6
1,823,107	+		EFB2_01726	0.36	-1.9
1,823,108	-		EFB2_01726	0.37	+0.0
1,823,108	-		EFB2_01726	0.37	-1.7
1,823,108	-		EFB2_01726	0.37	+1.2
1,823,118	+		EFB2_01726	0.38	-0.1
1,823,118	+		EFB2_01726	0.38	-1.4
1,823,118	+		EFB2_01726	0.38	-2.4
1,823,118	+		EFB2_01726	0.38	-0.2
1,823,329	+		EFB2_01726	0.60	+0.3
1,823,329	+		EFB2_01726	0.60	+0.3
1,823,329	+		EFB2_01726	0.60	-0.6
1,823,329	+		EFB2_01726	0.60	-0.2
1,823,329	+		EFB2_01726	0.60	-0.6
1,823,330	-		EFB2_01726	0.61	+0.2
1,823,330	-		EFB2_01726	0.61	-0.7
1,823,330	-		EFB2_01726	0.61	+2.6
1,823,330	-		EFB2_01726	0.61	-0.4
1,823,330	-		EFB2_01726	0.61	-2.4
1,823,330	-		EFB2_01726	0.61	+2.9
1,823,330	-		EFB2_01726	0.61	+1.9
1,823,350	+		EFB2_01726	0.63	-0.6
1,823,350	+		EFB2_01726	0.63	-1.9
1,823,350	+		EFB2_01726	0.63	-0.2
1,823,350	+		EFB2_01726	0.63	+0.5
1,823,351	-		EFB2_01726	0.63	+1.0
1,823,351	-		EFB2_01726	0.63	-0.2
1,823,385	+		EFB2_01726	0.66	+2.9
1,823,386	-		EFB2_01726	0.67	-3.4
1,823,479	+		EFB2_01726	0.77	+0.7
1,823,479	+		EFB2_01726	0.77	-1.0
1,823,479	+		EFB2_01726	0.77	+0.8
1,823,480	-		EFB2_01726	0.77	-0.3
1,823,480	-		EFB2_01726	0.77	-1.6
1,823,480	-		EFB2_01726	0.77	-0.8
1,823,480	-		EFB2_01726	0.77	+1.6
1,823,480	-		EFB2_01726	0.77	-3.1
1,823,480	-		EFB2_01726	0.77	-0.1
1,823,480	-		EFB2_01726	0.77	-1.6
1,823,508	+		EFB2_01726	0.80	-1.0
1,823,512	+		EFB2_01726	0.80	+0.3
1,823,512	+		EFB2_01726	0.80	-0.1
1,823,512	+		EFB2_01726	0.80	+1.2
1,823,512	+		EFB2_01726	0.80	+0.1
1,823,512	+		EFB2_01726	0.80	-0.9
1,823,512	+		EFB2_01726	0.80	-0.3
1,823,513	-		EFB2_01726	0.80	-0.7
1,823,513	-		EFB2_01726	0.80	+2.0
1,823,513	-		EFB2_01726	0.80	+0.6
1,823,513	-		EFB2_01726	0.80	-0.1
1,823,513	-		EFB2_01726	0.80	+0.1
1,823,513	-		EFB2_01726	0.80	-1.0
1,823,525	+		EFB2_01726	0.82	+0.8
1,823,525	+		EFB2_01726	0.82	+1.0
1,823,525	+		EFB2_01726	0.82	-0.9
1,823,526	-		EFB2_01726	0.82	-0.3
1,823,526	-		EFB2_01726	0.82	+0.0
1,823,526	-		EFB2_01726	0.82	+0.3
1,823,526	-		EFB2_01726	0.82	+0.0
1,823,693	+				+1.0
1,823,694	-				-0.1
1,823,699	+				+2.2
1,823,699	+				+0.2
1,823,700	-				-1.9
1,823,700	-				+0.1
1,823,700	-				-0.7
1,823,769	+				-2.3