Strain Fitness in Escherichia fergusonii Becca around EFB2_01451

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,517,944	-		EFB2_01450	0.20	-1.9
1,518,021	+		EFB2_01450	0.28	+0.5
1,518,021	+		EFB2_01450	0.28	-0.3
1,518,021	+		EFB2_01450	0.28	-0.6
1,518,021	+		EFB2_01450	0.28	-0.6
1,518,022	-		EFB2_01450	0.28	-2.6
1,518,022	-		EFB2_01450	0.28	-1.8
1,518,097	-		EFB2_01450	0.37	-1.6
1,518,115	+		EFB2_01450	0.39	+1.3
1,518,115	+		EFB2_01450	0.39	+0.4
1,518,116	-		EFB2_01450	0.39	-2.8
1,518,116	-		EFB2_01450	0.39	-0.6
1,518,116	-		EFB2_01450	0.39	+0.1
1,518,123	+		EFB2_01450	0.40	-0.4
1,518,123	+		EFB2_01450	0.40	-1.5
1,518,124	-		EFB2_01450	0.40	+0.8
1,518,126	+		EFB2_01450	0.40	+0.1
1,518,126	+		EFB2_01450	0.40	+0.8
1,518,126	+		EFB2_01450	0.40	+0.2
1,518,126	+		EFB2_01450	0.40	-0.0
1,518,127	-		EFB2_01450	0.40	+1.4
1,518,183	+		EFB2_01450	0.46	-0.7
1,518,183	+		EFB2_01450	0.46	+2.6
1,518,184	-		EFB2_01450	0.46	+0.5
1,518,227	+		EFB2_01450	0.51	-0.9
1,518,227	+		EFB2_01450	0.51	+1.5
1,518,227	+		EFB2_01450	0.51	-0.1
1,518,228	-		EFB2_01450	0.51	-1.6
1,518,228	-		EFB2_01450	0.51	-0.5
1,518,228	-		EFB2_01450	0.51	+1.4
1,518,228	-		EFB2_01450	0.51	-0.4
1,518,228	-		EFB2_01450	0.51	+2.1
1,518,228	-		EFB2_01450	0.51	+1.2
1,518,252	+		EFB2_01450	0.54	+1.3
1,518,301	-		EFB2_01450	0.60	-1.0
1,518,319	-		EFB2_01450	0.62	-1.5
1,518,353	+		EFB2_01450	0.65	+0.7
1,518,353	+		EFB2_01450	0.65	+0.5
1,518,354	-		EFB2_01450	0.65	+2.0
1,518,379	+		EFB2_01450	0.68	-2.2
1,518,379	+		EFB2_01450	0.68	+1.0
1,518,380	-		EFB2_01450	0.68	+1.2
1,518,380	-		EFB2_01450	0.68	+0.8
1,518,380	-		EFB2_01450	0.68	-0.9
1,518,380	-		EFB2_01450	0.68	+0.6
1,518,401	+		EFB2_01450	0.71	-0.1
1,518,401	+		EFB2_01450	0.71	+0.9
1,518,401	+		EFB2_01450	0.71	+1.0
1,518,401	+		EFB2_01450	0.71	-3.4
1,518,401	+		EFB2_01450	0.71	+1.0
1,518,401	+		EFB2_01450	0.71	-0.0
1,518,402	-		EFB2_01450	0.71	-0.1
1,518,402	-		EFB2_01450	0.71	-2.6
1,518,464	+		EFB2_01450	0.78	+0.9
1,518,465	-		EFB2_01450	0.78	-1.5
1,518,487	+		EFB2_01450	0.80	-0.7
1,518,487	+		EFB2_01450	0.80	+1.6
1,518,487	+		EFB2_01450	0.80	-0.6
1,518,487	+		EFB2_01450	0.80	+0.5
1,518,487	+		EFB2_01450	0.80	+2.9
1,518,487	+		EFB2_01450	0.80	-3.2
1,518,488	-		EFB2_01450	0.80	+3.9
1,518,488	-		EFB2_01450	0.80	+1.3
1,518,502	-		EFB2_01450	0.82	-1.1
1,518,533	-		EFB2_01450	0.85	+0.4
1,518,533	-		EFB2_01450	0.85	-1.0
1,518,554	-		EFB2_01450	0.88	-2.5
1,518,554	-		EFB2_01450	0.88	-0.5
1,518,561	+		EFB2_01450	0.89	-1.8
1,518,562	-		EFB2_01450	0.89	+0.0
1,518,576	+				+0.1
1,518,676	+				-1.5
1,518,677	-				-0.1
1,518,679	+				+0.1
1,518,679	+				+1.0
1,518,679	+				-0.7
1,518,679	+				-3.2
1,518,679	+				+0.6
1,518,679	+				-1.8
1,518,679	+				-1.8
1,518,679	+				-3.0
1,518,680	-				-0.6
1,518,680	-				+0.7
1,518,680	-				-3.2
1,518,693	+				-0.1
1,518,693	+				-0.6
1,518,693	+				+0.5
1,518,694	-				-0.3
1,518,694	-				+0.1
1,518,694	-				+0.6
1,518,703	+				+0.6
1,518,703	+				-1.3
1,518,703	+				+0.8
1,518,704	-				-0.9
1,518,704	-				+0.7
1,518,715	+				-0.1
1,518,715	+				-0.8
1,518,715	+				-1.6
1,518,715	+				-3.0
1,518,715	+				+1.0
1,518,715	+				+0.6
1,518,715	+				-0.5
1,518,715	+				-2.9
1,518,715	+				+0.9
1,518,715	+				+0.5
1,518,715	+				-3.3
1,518,715	+				-1.9
1,518,715	+				+0.6
1,518,715	+				-0.6
1,518,715	+				-2.9
1,518,715	+				+1.4
1,518,715	+				-1.5
1,518,715	+				-2.4
1,518,715	+				+0.9
1,518,715	+				+0.4
1,518,715	+				+2.9
1,518,715	+				-0.8
1,518,715	+				-0.9
1,518,715	+				-1.5
1,518,715	+				-0.3
1,518,715	+				+0.2
1,518,715	+				-1.1
1,518,715	+				+0.3
1,518,715	+				-2.3
1,518,715	+				+0.7
1,518,715	+				+2.3
1,518,715	+				-2.1
1,518,715	+				+3.2
1,518,715	+				+0.4
1,518,715	+				+0.3
1,518,715	+				+1.9
1,518,715	+				-0.6
1,518,715	+				+0.6
1,518,715	+				+0.5
1,518,715	+				-1.0
1,518,715	+				-1.5
1,518,715	+				+0.2
1,518,715	+				+1.4
1,518,715	+				+0.2
1,518,715	+				+1.3
1,518,715	+				-1.3
1,518,715	+				+0.1
1,518,715	+				-0.1
1,518,715	+				+1.5
1,518,715	+				-2.3
1,518,715	+				+0.9
1,518,715	+				+1.0
1,518,715	+				+0.8
1,518,715	+				-0.1
1,518,715	+				-1.0
1,518,715	+				-0.3
1,518,715	+				-0.3
1,518,715	+				+0.9
1,518,715	-				+2.5
1,518,716	-				-0.7
1,518,716	-				-1.1
1,518,716	-				+1.4
1,518,716	-				-0.4
1,518,716	-				+0.5
1,518,716	-				+0.7
1,518,716	-				-1.7
1,518,716	-				+0.4
1,518,716	-				-0.3
1,518,716	-				-0.8
1,518,716	-				-0.5
1,518,716	-				-0.3
1,518,716	-				+0.7
1,518,716	-				-1.3
1,518,716	-				+0.5
1,518,716	-				+0.7
1,518,716	-				+0.1
1,518,716	-				-1.9
1,518,716	-				-0.1
1,518,716	-				+1.2
1,518,716	-				-1.9
1,518,716	-				+1.1
1,518,716	-				-0.9
1,518,716	-				-1.9
1,518,716	-				+2.7
1,518,716	-				-0.9
1,518,716	-				-1.3
1,518,716	-				-1.5
1,518,716	-				+0.3
1,518,716	-				-0.4
1,518,716	-				-0.9
1,518,716	-				-0.7
1,518,716	-				+0.4
1,518,716	-				+0.2
1,518,716	-				+0.8
1,518,716	-				+0.6
1,518,716	-				-0.4
1,518,716	-				+1.2
1,518,716	-				-0.0
1,518,716	-				-0.7
1,518,716	-				+0.8
1,518,716	-				+1.3
1,518,716	-				-0.8
1,518,716	-				-1.6
1,518,716	-				+1.3
1,518,716	-				-0.6
1,518,716	-				-1.5
1,518,716	-				-2.9
1,518,716	-				+0.5
1,518,716	-				-0.1
1,518,716	-				+0.7
1,518,716	-				+1.0
1,518,716	-				+0.6
1,518,716	-				-0.7
1,518,716	-				+2.0
1,518,716	-				+0.8
1,518,716	-				-1.1
1,518,716	-				-1.0
1,518,716	-				+1.9
1,518,716	-				-0.9
1,518,716	-				+1.2
1,518,716	-				-0.4
1,518,716	-				-0.2
1,518,716	-				+0.8
1,518,716	-				+0.1
1,518,716	-				-0.6
1,518,716	-				+0.5
1,518,716	-				-0.7
1,518,716	-				-1.8
1,518,716	-				-0.9
1,518,716	-				-1.7
1,518,716	-				+0.2
1,518,716	-				+0.5
1,518,716	-				-0.1
1,518,716	-				+0.5
1,518,716	-				-0.1
1,518,716	-				-0.6
1,518,716	-				-1.6
1,518,717	+				+2.0
1,518,717	+				+1.4
1,518,717	+				+2.4
1,518,717	+				-2.4
1,518,717	+				+1.7
1,518,717	+				-1.0
1,518,717	+				-1.5
1,518,717	+				+2.1
1,518,717	+				-2.2
1,518,718	-				+0.1
1,518,730	+				+1.2
1,518,730	+				+0.8
1,518,731	-				-1.9
1,518,748	+				+0.2
1,518,748	+				-1.0
1,518,748	+				-0.2
1,518,748	+				+0.1
1,518,748	+				+0.7
1,518,749	-				-0.4
1,518,749	-				+0.2
1,518,749	-				-0.9
1,518,749	-				-1.7
1,518,749	-				+0.2
1,518,749	-				+1.4
1,518,758	+				+1.4
1,518,759	-				+0.1
1,518,759	-				+1.3
1,518,759	-				+1.3
1,518,761	+				+1.2
1,518,761	+				-0.2
1,518,761	+				+1.3
1,518,761	+				-0.7
1,518,761	+				+0.2
1,518,761	+				-1.7
1,518,762	-				-0.5
1,518,762	-				+0.7
1,518,762	-				+1.2
1,518,762	-				-0.2
1,518,762	-				-0.8
1,518,762	-				+0.8
1,518,800	+				-1.5
1,518,800	+				-2.0
1,518,800	+				+0.1
1,518,801	-				+0.3
1,518,819	+				-0.0
1,518,820	-				-0.7
1,518,820	-				+2.0
1,518,831	+				-1.0
1,518,852	+				-2.4
1,518,852	+				-0.1
1,518,852	+				-1.3
1,518,852	+				+0.7
1,518,853	-				+0.7
1,518,853	-				-1.5
1,518,890	-				-1.8
1,518,921	+				+0.5
1,518,921	+				-1.9
1,518,921	+				+0.5
1,518,922	-				+1.7
1,518,922	-				+0.9
1,518,922	-				+0.7
1,518,922	-				-1.9
1,518,924	+				-0.3
1,518,925	-				+1.1
1,518,939	+				-2.3
1,518,939	+				+1.6
1,518,940	-				-1.1
1,518,940	-				-0.7
1,518,940	-				+0.2
1,519,040	+		EFB2_01451	0.12	+0.3
1,519,040	+		EFB2_01451	0.12	+1.0
1,519,040	+		EFB2_01451	0.12	-0.9
1,519,041	-		EFB2_01451	0.12	-2.6
1,519,041	-		EFB2_01451	0.12	+1.5
1,519,041	-		EFB2_01451	0.12	-1.4
1,519,053	+		EFB2_01451	0.14	-1.2
1,519,053	+		EFB2_01451	0.14	+0.4
1,519,158	+		EFB2_01451	0.27	+0.0
1,519,159	-		EFB2_01451	0.27	-1.0
1,519,159	-		EFB2_01451	0.27	-0.7
1,519,159	-		EFB2_01451	0.27	-2.9
1,519,159	-		EFB2_01451	0.27	-1.5
1,519,194	+		EFB2_01451	0.32	+0.2
1,519,194	+		EFB2_01451	0.32	-1.7
1,519,207	-		EFB2_01451	0.33	-1.1
1,519,242	+		EFB2_01451	0.38	-0.5
1,519,243	-		EFB2_01451	0.38	+1.9
1,519,243	-		EFB2_01451	0.38	-1.1
1,519,243	-		EFB2_01451	0.38	+0.3
1,519,243	-		EFB2_01451	0.38	+2.2
1,519,275	+		EFB2_01451	0.42	+0.2
1,519,275	+		EFB2_01451	0.42	-0.3
1,519,275	+		EFB2_01451	0.42	-0.0
1,519,276	-		EFB2_01451	0.42	+1.1
1,519,276	-		EFB2_01451	0.42	+0.5
1,519,276	-		EFB2_01451	0.42	+1.1
1,519,281	+		EFB2_01451	0.43	+0.2
1,519,282	-		EFB2_01451	0.43	-2.7
1,519,282	-		EFB2_01451	0.43	-2.0
1,519,283	+		EFB2_01451	0.43	-1.5
1,519,283	+		EFB2_01451	0.43	+1.0
1,519,283	+		EFB2_01451	0.43	+1.4
1,519,283	+		EFB2_01451	0.43	+0.7
1,519,283	+		EFB2_01451	0.43	-0.3
1,519,284	-		EFB2_01451	0.43	-1.7
1,519,284	-		EFB2_01451	0.43	+1.4
1,519,284	-		EFB2_01451	0.43	+2.6
1,519,284	-		EFB2_01451	0.43	+0.7
1,519,284	-		EFB2_01451	0.43	-0.7
1,519,284	-		EFB2_01451	0.43	+0.5
1,519,284	-		EFB2_01451	0.43	-1.5
1,519,284	-		EFB2_01451	0.43	-3.1
1,519,378	-		EFB2_01451	0.55	+2.2
1,519,405	+		EFB2_01451	0.58	-1.4
1,519,405	+		EFB2_01451	0.58	-2.4
1,519,406	-		EFB2_01451	0.58	+0.5
1,519,440	+		EFB2_01451	0.63	-0.1
1,519,441	-		EFB2_01451	0.63	+1.8
1,519,441	-		EFB2_01451	0.63	+0.4
1,519,441	-		EFB2_01451	0.63	+1.0
1,519,459	+		EFB2_01451	0.65	-1.5
1,519,460	-		EFB2_01451	0.65	-2.7
1,519,460	-		EFB2_01451	0.65	+1.6
1,519,501	+		EFB2_01451	0.70	-1.8
1,519,501	+		EFB2_01451	0.70	-1.5
1,519,502	-		EFB2_01451	0.71	+0.1
1,519,502	-		EFB2_01451	0.71	-1.4
1,519,502	-		EFB2_01451	0.71	-2.0
1,519,663	+				+1.7
1,519,663	+				-0.1
1,519,663	+				-1.2
1,519,663	+				+1.3
1,519,663	+				+1.4
1,519,663	+				+0.2
1,519,663	+				+0.0
1,519,664	-				-0.8
1,519,664	-				-0.7
1,519,664	-				-1.9
1,519,664	-				+0.1
1,519,664	-				-1.0
1,519,664	-				-0.1
1,519,667	+				+2.1
1,519,779	+				-1.7
1,519,780	-				-0.8
1,519,780	-				-1.4
1,519,812	+				-0.6
1,519,812	+				-1.3
1,519,812	+				-1.3
1,519,813	-				+0.5
1,519,813	-				+1.0
1,519,813	-				-1.5
1,519,813	-				-1.1
1,519,814	+				+0.8
1,519,814	+				-0.5
1,519,814	+				-0.5
1,519,814	+				+1.3
1,519,815	-				-1.9
1,519,815	-				-0.8
1,519,816	+				-1.2
1,519,816	+				+0.5
1,519,817	-				+2.9
1,519,817	-				+0.8
1,519,817	-				+1.3
1,519,817	-				+1.4
1,519,825	+				-0.2
1,519,826	-				-1.4
1,519,845	+				+1.3
1,519,845	+				+0.4
1,519,846	-				+0.9
1,519,846	-				+0.9
1,519,846	-				-2.0
1,519,846	-				+0.4
1,519,846	-				+0.9
1,519,849	+				+1.4
1,519,849	+				+2.6
1,519,849	+				+3.5
1,519,849	+				-0.1
1,519,849	+				-0.9
1,519,850	-				-0.1
1,519,850	-				+1.0
1,519,850	-				+2.5
1,519,850	-				-2.7
1,519,850	-				+0.3
1,519,850	-				-0.3
1,519,858	+				+0.4
1,519,858	+				+2.3
1,519,859	-				+1.8
1,519,859	-				+0.9
1,519,859	-				+1.7
1,519,859	-				+3.9
1,519,861	+				+0.7
1,519,862	-				+1.4
1,519,862	-				+3.0
1,519,862	-				-1.0
1,519,873	-				-0.2
1,519,878	+				+2.6
1,519,879	-				-1.9
1,519,880	+				-0.7
1,519,880	+				+0.2
1,519,880	+				-0.3
1,519,880	+				-0.5
1,519,881	-				+0.1
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