Strain Fitness in Escherichia fergusonii Becca around EFB2_01366

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,414,211	+		EFB2_01364	0.67	+3.1
1,414,533	+		EFB2_01364	0.84	+0.5
1,414,533	+		EFB2_01364	0.84	+2.4
1,414,533	+		EFB2_01364	0.84	+0.3
1,414,533	+		EFB2_01364	0.84	-1.4
1,414,533	+		EFB2_01364	0.84	-0.1
1,414,533	+		EFB2_01364	0.84	-1.5
1,414,549	+		EFB2_01364	0.85	-0.5
1,414,549	+		EFB2_01364	0.85	-0.1
1,414,579	+		EFB2_01364	0.86	+0.5
1,414,741	+				+0.9
1,414,741	+				+1.0
1,415,117	+		EFB2_01365	0.85	+0.3
1,415,142	+				-1.1
1,415,142	+				+0.5
1,415,142	+				+0.5
1,415,164	+				+0.3
1,415,164	+				+1.1
1,415,165	-				-1.0
1,415,174	+				+1.2
1,415,174	+				+1.7
1,415,174	+				+0.5
1,415,174	+				-0.4
1,415,174	+				-2.4
1,415,174	+				+0.0
1,415,174	+				-0.4
1,415,175	-				+1.1
1,415,175	-				-0.1
1,415,175	-				-0.0
1,415,177	+				+1.7
1,415,177	+				+1.9
1,415,177	+				-0.1
1,415,177	+				+0.0
1,415,177	+				+0.2
1,415,177	+				-1.8
1,415,178	-				-0.7
1,415,186	+				-1.8
1,415,186	+				-0.1
1,415,186	+				-0.9
1,415,186	+				+0.3
1,415,186	+				-0.7
1,415,186	+				+0.8
1,415,186	+				-1.5
1,415,186	+				+0.2
1,415,186	+				+0.6
1,415,186	+				-0.2
1,415,186	+				+0.1
1,415,186	+				+1.4
1,415,186	+				-1.5
1,415,186	+				-0.4
1,415,186	+				+0.3
1,415,186	+				-0.6
1,415,186	+				-1.3
1,415,186	+				+0.0
1,415,186	+				-1.4
1,415,186	+				+0.1
1,415,187	-				+0.3
1,415,187	-				-1.5
1,415,187	-				-0.7
1,415,187	-				+1.2
1,415,187	-				+2.0
1,415,187	-				+0.7
1,415,187	-				+1.6
1,415,187	-				+1.2
1,415,187	-				+0.0
1,415,187	-				-2.5
1,415,187	-				-0.8
1,415,187	-				+3.1
1,415,187	-				+2.5
1,415,187	-				-1.2
1,415,187	-				+0.5
1,415,187	-				-1.3
1,415,223	+		EFB2_01366	0.22	-2.6
1,415,223	+		EFB2_01366	0.22	-1.0
1,415,223	+		EFB2_01366	0.22	+1.0
1,415,223	+		EFB2_01366	0.22	+1.2
1,415,224	-		EFB2_01366	0.23	-0.4
1,415,224	-		EFB2_01366	0.23	+0.0
1,415,224	-		EFB2_01366	0.23	-0.8
1,415,232	+		EFB2_01366	0.27	+1.1
1,415,240	+		EFB2_01366	0.31	+3.4
1,415,271	-		EFB2_01366	0.46	-1.0
1,415,271	-		EFB2_01366	0.46	-2.3
1,415,415	+				+1.1
1,415,416	-				-0.4
1,415,423	+				-1.1
1,415,423	+				+0.2
1,415,423	+				-0.9
1,415,429	+				-0.3
1,415,429	+				-1.1
1,415,430	-				-1.4
1,415,430	-				+1.6
1,415,433	+				+0.8
1,415,433	+				+0.9
1,415,433	+				-0.6
1,415,433	+				+0.9
1,415,433	+				-0.1
1,415,433	+				+0.5
1,415,433	+				-0.5
1,415,433	+				+2.1
1,415,433	+				+0.6
1,415,433	+				-3.0
1,415,434	-				+0.1
1,415,434	-				-2.1
1,415,434	-				-0.7
1,415,434	-				+1.4
1,415,434	-				+2.3
1,415,434	-				+1.1
1,415,434	-				-1.6
1,415,434	-				+1.0
1,415,434	-				+0.3
1,415,434	-				+1.6
1,415,506	+				-0.0
1,415,506	+				+2.6
1,415,506	+				+0.9
1,415,506	+				+0.1
1,415,506	+				-0.6
1,415,506	+				-0.8
1,415,506	+				-0.3
1,415,506	+				+1.5
1,415,506	+				-1.3
1,415,507	-				-1.1
1,415,507	-				+1.7
1,415,507	-				-2.0
1,415,507	-				-0.7
1,415,507	-				+0.9
1,415,507	-				-0.7
1,415,507	-				+0.3
1,415,507	-				-1.0
1,415,507	-				-0.8
1,415,514	+				-0.6
1,415,514	+				+0.9
1,415,515	-				-2.4
1,415,515	-				+1.6
1,415,515	-				+0.1
1,415,515	-				+1.3
1,415,517	+				+0.4
1,415,517	+				+1.3
1,415,517	+				+1.1
1,415,517	+				-3.0
1,415,517	+				-1.5
1,415,517	+				-0.5
1,415,517	+				+1.1
1,415,517	+				+0.6
1,415,517	+				-1.1
1,415,517	+				-2.3
1,415,518	-				+2.0
1,415,518	-				+2.5
1,415,518	-				+0.1
1,415,518	-				+0.7
1,415,518	-				+1.0
1,415,518	-				+0.5
1,415,518	-				-0.8
1,415,518	-				+1.0
1,415,518	-				-0.1
1,415,518	-				-1.8
1,415,518	-				+1.0
1,415,529	+				+0.0
1,415,618	+		EFB2_01367	0.14	+3.9
1,415,618	+		EFB2_01367	0.14	+1.4
1,415,618	+		EFB2_01367	0.14	+1.6
1,415,619	-		EFB2_01367	0.14	-2.1
1,415,668	+		EFB2_01367	0.18	-1.5
1,415,668	+		EFB2_01367	0.18	-1.9
1,415,668	+		EFB2_01367	0.18	+1.4
1,415,668	+		EFB2_01367	0.18	+1.9
1,415,668	+		EFB2_01367	0.18	+0.9
1,415,669	-		EFB2_01367	0.18	-1.6
1,415,669	-		EFB2_01367	0.18	+0.7
1,415,669	-		EFB2_01367	0.18	+2.9
1,415,669	-		EFB2_01367	0.18	+1.4
1,415,669	-		EFB2_01367	0.18	-2.0
1,415,687	+		EFB2_01367	0.19	-2.0
1,415,687	+		EFB2_01367	0.19	+0.6
1,415,687	+		EFB2_01367	0.19	+0.2
1,415,687	+		EFB2_01367	0.19	-0.2
1,415,687	+		EFB2_01367	0.19	+3.5
1,415,687	+		EFB2_01367	0.19	+1.3
1,415,687	+		EFB2_01367	0.19	-0.5
1,415,687	+		EFB2_01367	0.19	-0.1
1,415,687	+		EFB2_01367	0.19	-2.2
1,415,687	+		EFB2_01367	0.19	+0.9
1,415,687	+		EFB2_01367	0.19	+0.9
1,415,687	+		EFB2_01367	0.19	-0.2
1,415,687	+		EFB2_01367	0.19	+0.8
1,415,687	+		EFB2_01367	0.19	+1.8
1,415,687	+		EFB2_01367	0.19	+1.5
1,415,687	+		EFB2_01367	0.19	+0.1
1,415,687	+		EFB2_01367	0.19	-2.1
1,415,688	-		EFB2_01367	0.20	+1.4
1,415,688	-		EFB2_01367	0.20	+0.5
1,415,688	-		EFB2_01367	0.20	+2.6
1,415,688	-		EFB2_01367	0.20	-1.7
1,415,688	-		EFB2_01367	0.20	+0.1
1,415,688	-		EFB2_01367	0.20	-2.2
1,415,688	-		EFB2_01367	0.20	-1.2
1,415,688	-		EFB2_01367	0.20	-0.2
1,415,688	-		EFB2_01367	0.20	-2.3
1,415,688	-		EFB2_01367	0.20	-0.6
1,415,688	-		EFB2_01367	0.20	+2.3
1,415,691	+		EFB2_01367	0.20	-1.6
1,415,691	+		EFB2_01367	0.20	+3.0
1,415,691	+		EFB2_01367	0.20	-0.6
1,415,691	+		EFB2_01367	0.20	+2.5
1,415,691	+		EFB2_01367	0.20	-3.1
1,415,691	+		EFB2_01367	0.20	-0.7
1,415,691	+		EFB2_01367	0.20	-2.8
1,415,691	+		EFB2_01367	0.20	+0.4
1,415,691	+		EFB2_01367	0.20	-3.4
1,415,692	-		EFB2_01367	0.20	-0.9
1,415,692	-		EFB2_01367	0.20	-2.6
1,415,692	-		EFB2_01367	0.20	+0.6
1,415,692	-		EFB2_01367	0.20	+1.8
1,415,692	-		EFB2_01367	0.20	-1.1
1,415,692	-		EFB2_01367	0.20	+0.8
1,415,692	-		EFB2_01367	0.20	+0.3
1,415,692	-		EFB2_01367	0.20	-1.9
1,415,692	-		EFB2_01367	0.20	+1.8
1,415,692	-		EFB2_01367	0.20	-0.2
1,415,692	-		EFB2_01367	0.20	-2.0
1,415,692	-		EFB2_01367	0.20	-0.3
1,415,692	-		EFB2_01367	0.20	+2.1
1,415,866	+		EFB2_01367	0.33	+0.7
1,415,866	+		EFB2_01367	0.33	-1.7
1,415,866	+		EFB2_01367	0.33	+0.2
1,415,866	+		EFB2_01367	0.33	-2.2
1,415,867	-		EFB2_01367	0.33	+1.0
1,415,905	+		EFB2_01367	0.36	+0.0
1,415,905	+		EFB2_01367	0.36	+0.6
1,415,905	+		EFB2_01367	0.36	-0.4
1,415,905	+		EFB2_01367	0.36	-0.3
1,415,905	+		EFB2_01367	0.36	+0.7
1,415,905	+		EFB2_01367	0.36	+0.9
1,415,905	+		EFB2_01367	0.36	-1.0
1,415,905	+		EFB2_01367	0.36	-0.6
1,415,905	+		EFB2_01367	0.36	+1.8
1,415,905	+		EFB2_01367	0.36	+0.8
1,415,905	+		EFB2_01367	0.36	+1.5
1,415,905	+		EFB2_01367	0.36	-0.0
1,415,905	+		EFB2_01367	0.36	+1.4
1,415,906	-		EFB2_01367	0.37	-0.7
1,415,906	-		EFB2_01367	0.37	-0.5
1,415,906	-		EFB2_01367	0.37	-0.7
1,415,906	-		EFB2_01367	0.37	+0.6
1,415,906	-		EFB2_01367	0.37	-2.6
1,415,906	-		EFB2_01367	0.37	+0.5
1,415,906	-		EFB2_01367	0.37	-0.2
1,415,906	-		EFB2_01367	0.37	-0.2
1,415,906	-		EFB2_01367	0.37	+1.4
1,415,906	-		EFB2_01367	0.37	-0.8
1,415,906	-		EFB2_01367	0.37	+1.2
1,415,906	-		EFB2_01367	0.37	-1.2
1,415,906	-		EFB2_01367	0.37	+2.8
1,415,907	+		EFB2_01367	0.37	+0.1
1,415,907	+		EFB2_01367	0.37	-1.5
1,415,907	+		EFB2_01367	0.37	+0.3
1,415,907	+		EFB2_01367	0.37	-1.2
1,415,907	+		EFB2_01367	0.37	-2.1
1,415,907	+		EFB2_01367	0.37	-0.6
1,415,907	+		EFB2_01367	0.37	-1.2
1,415,907	+		EFB2_01367	0.37	+0.9
1,415,907	+		EFB2_01367	0.37	+0.2
1,415,907	+		EFB2_01367	0.37	+1.4
1,415,907	+		EFB2_01367	0.37	-1.7
1,415,907	+		EFB2_01367	0.37	-1.5
1,415,908	-		EFB2_01367	0.37	+0.3
1,415,908	-		EFB2_01367	0.37	-1.8
1,415,908	-		EFB2_01367	0.37	-2.9
1,415,908	-		EFB2_01367	0.37	-0.4
1,415,908	-		EFB2_01367	0.37	-0.9
1,415,908	-		EFB2_01367	0.37	+0.6
1,415,908	-		EFB2_01367	0.37	-1.1
1,415,908	-		EFB2_01367	0.37	-0.0
1,415,908	-		EFB2_01367	0.37	+0.7
1,415,968	+		EFB2_01367	0.41	-1.0
1,415,968	+		EFB2_01367	0.41	-1.2
1,415,968	+		EFB2_01367	0.41	+0.8
1,415,968	+		EFB2_01367	0.41	+0.2
1,415,968	+		EFB2_01367	0.41	-1.1
1,415,969	-		EFB2_01367	0.41	-1.0
1,415,969	-		EFB2_01367	0.41	+0.8
1,415,969	-		EFB2_01367	0.41	-0.2
1,415,969	-		EFB2_01367	0.41	-1.0
1,415,969	-		EFB2_01367	0.41	-2.8
1,415,969	-		EFB2_01367	0.41	-0.1
1,415,985	+		EFB2_01367	0.43	+1.8
1,416,001	+		EFB2_01367	0.44	-1.6
1,416,001	+		EFB2_01367	0.44	+1.0
1,416,001	+		EFB2_01367	0.44	-2.3
1,416,001	+		EFB2_01367	0.44	-0.4
1,416,002	-		EFB2_01367	0.44	+1.8
1,416,002	-		EFB2_01367	0.44	+0.3
1,416,002	-		EFB2_01367	0.44	-2.2
1,416,002	-		EFB2_01367	0.44	-1.2
1,416,019	-		EFB2_01367	0.45	-3.0
1,416,069	+		EFB2_01367	0.49	-1.2
1,416,070	-		EFB2_01367	0.49	+1.5
1,416,070	-		EFB2_01367	0.49	+0.6
1,416,135	+		EFB2_01367	0.54	+1.2
1,416,136	-		EFB2_01367	0.54	-0.1
1,416,220	-		EFB2_01367	0.61	-1.3
1,416,222	+		EFB2_01367	0.61	+2.0
1,416,222	+		EFB2_01367	0.61	+0.2
1,416,222	+		EFB2_01367	0.61	+0.4
1,416,222	+		EFB2_01367	0.61	+1.3
1,416,222	+		EFB2_01367	0.61	+0.1
1,416,222	+		EFB2_01367	0.61	-0.2
1,416,222	+		EFB2_01367	0.61	+0.8
1,416,222	+		EFB2_01367	0.61	+0.5
1,416,222	+		EFB2_01367	0.61	+1.1
1,416,222	+		EFB2_01367	0.61	+0.5
1,416,222	+		EFB2_01367	0.61	-1.3
1,416,223	-		EFB2_01367	0.61	-0.1
1,416,223	-		EFB2_01367	0.61	-1.6
1,416,223	-		EFB2_01367	0.61	+2.8
1,416,223	-		EFB2_01367	0.61	+0.0
1,416,223	-		EFB2_01367	0.61	-1.5
1,416,223	-		EFB2_01367	0.61	-0.2
1,416,223	-		EFB2_01367	0.61	+0.8
1,416,223	-		EFB2_01367	0.61	-1.9
1,416,223	-		EFB2_01367	0.61	-1.9
1,416,223	-		EFB2_01367	0.61	-0.7
1,416,223	-		EFB2_01367	0.61	-1.8
1,416,223	-		EFB2_01367	0.61	-0.7
1,416,223	-		EFB2_01367	0.61	-0.5
1,416,225	+		EFB2_01367	0.61	-1.4
1,416,225	+		EFB2_01367	0.61	+0.6
1,416,225	+		EFB2_01367	0.61	-1.8
1,416,225	+		EFB2_01367	0.61	+0.5
1,416,225	+		EFB2_01367	0.61	+0.5
1,416,226	-		EFB2_01367	0.61	-2.0
1,416,226	-		EFB2_01367	0.61	+0.9
1,416,226	-		EFB2_01367	0.61	-0.5
1,416,226	-		EFB2_01367	0.61	-1.2
1,416,226	-		EFB2_01367	0.61	+2.8
1,416,226	-		EFB2_01367	0.61	-3.0
1,416,226	-		EFB2_01367	0.61	-1.2
1,416,226	-		EFB2_01367	0.61	+0.7
1,416,229	+		EFB2_01367	0.62	-0.0
1,416,229	+		EFB2_01367	0.62	+0.6
1,416,229	+		EFB2_01367	0.62	+0.4
1,416,241	-		EFB2_01367	0.63	-1.2