Strain Fitness in Escherichia fergusonii Becca around EFB2_01294

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,336,448	+		EFB2_01293	0.40	+0.6
1,336,448	+		EFB2_01293	0.40	+0.8
1,336,448	+		EFB2_01293	0.40	+0.6
1,336,448	+		EFB2_01293	0.40	+1.1
1,336,448	+		EFB2_01293	0.40	-2.0
1,336,448	+		EFB2_01293	0.40	-1.3
1,336,448	+		EFB2_01293	0.40	-2.0
1,336,448	+		EFB2_01293	0.40	-0.5
1,336,449	-		EFB2_01293	0.40	+0.5
1,336,449	-		EFB2_01293	0.40	+1.0
1,336,449	-		EFB2_01293	0.40	-0.3
1,336,449	-		EFB2_01293	0.40	+2.4
1,336,457	+		EFB2_01293	0.40	-1.9
1,336,457	+		EFB2_01293	0.40	+1.0
1,336,458	-		EFB2_01293	0.41	-0.5
1,336,459	+		EFB2_01293	0.41	-0.0
1,336,459	+		EFB2_01293	0.41	-1.9
1,336,459	+		EFB2_01293	0.41	+1.1
1,336,459	+		EFB2_01293	0.41	+2.2
1,336,459	+		EFB2_01293	0.41	-2.4
1,336,459	+		EFB2_01293	0.41	+0.2
1,336,459	+		EFB2_01293	0.41	+0.2
1,336,459	+		EFB2_01293	0.41	-1.7
1,336,459	+		EFB2_01293	0.41	-0.1
1,336,460	-		EFB2_01293	0.41	-0.8
1,336,460	-		EFB2_01293	0.41	+1.9
1,336,460	-		EFB2_01293	0.41	+0.9
1,336,460	-		EFB2_01293	0.41	+0.5
1,336,460	-		EFB2_01293	0.41	+1.3
1,336,460	-		EFB2_01293	0.41	+0.4
1,336,460	-		EFB2_01293	0.41	+1.9
1,336,460	-		EFB2_01293	0.41	-2.7
1,336,460	-		EFB2_01293	0.41	+0.6
1,336,460	-		EFB2_01293	0.41	-1.3
1,336,460	-		EFB2_01293	0.41	+0.9
1,336,460	-		EFB2_01293	0.41	+0.3
1,336,460	-		EFB2_01293	0.41	-1.5
1,336,528	+		EFB2_01293	0.47	-2.1
1,336,528	+		EFB2_01293	0.47	-1.2
1,336,529	-		EFB2_01293	0.47	+0.7
1,336,529	-		EFB2_01293	0.47	-1.5
1,336,529	-		EFB2_01293	0.47	-1.0
1,336,529	-		EFB2_01293	0.47	-1.0
1,336,529	-		EFB2_01293	0.47	+1.3
1,336,529	-		EFB2_01293	0.47	+1.1
1,336,529	-		EFB2_01293	0.47	-2.1
1,336,529	-		EFB2_01293	0.47	-2.5
1,336,535	+		EFB2_01293	0.47	-2.5
1,336,536	-		EFB2_01293	0.47	+1.5
1,336,536	-		EFB2_01293	0.47	+1.4
1,336,548	+		EFB2_01293	0.48	-1.2
1,336,586	+		EFB2_01293	0.52	-0.9
1,336,587	-		EFB2_01293	0.52	+0.7
1,336,590	+		EFB2_01293	0.52	+0.5
1,336,590	+		EFB2_01293	0.52	-0.7
1,336,591	-		EFB2_01293	0.52	+0.2
1,336,591	-		EFB2_01293	0.52	+0.5
1,336,591	-		EFB2_01293	0.52	-1.6
1,336,591	-		EFB2_01293	0.52	+0.2
1,336,591	-		EFB2_01293	0.52	+0.6
1,336,622	+		EFB2_01293	0.55	-0.1
1,336,622	+		EFB2_01293	0.55	+0.6
1,336,623	-		EFB2_01293	0.55	+0.7
1,336,623	-		EFB2_01293	0.55	+0.0
1,336,623	-		EFB2_01293	0.55	+1.1
1,336,623	-		EFB2_01293	0.55	+1.9
1,336,639	+		EFB2_01293	0.56	-0.9
1,336,639	+		EFB2_01293	0.56	+0.1
1,336,639	+		EFB2_01293	0.56	+0.2
1,336,640	-		EFB2_01293	0.56	+0.3
1,336,640	-		EFB2_01293	0.56	-0.1
1,336,650	+		EFB2_01293	0.57	-1.7
1,336,650	+		EFB2_01293	0.57	+0.4
1,336,650	+		EFB2_01293	0.57	-0.1
1,336,690	+		EFB2_01293	0.61	+0.0
1,336,690	+		EFB2_01293	0.61	-0.2
1,336,690	+		EFB2_01293	0.61	+0.9
1,336,690	+		EFB2_01293	0.61	-1.6
1,336,690	+		EFB2_01293	0.61	-1.0
1,336,691	-		EFB2_01293	0.61	+1.4
1,336,691	-		EFB2_01293	0.61	+0.8
1,336,691	-		EFB2_01293	0.61	-1.2
1,336,691	-		EFB2_01293	0.61	-0.8
1,336,691	-		EFB2_01293	0.61	-3.2
1,336,691	-		EFB2_01293	0.61	+0.0
1,336,724	+		EFB2_01293	0.63	-0.1
1,336,780	+		EFB2_01293	0.68	-1.9
1,336,780	+		EFB2_01293	0.68	-1.9
1,336,780	+		EFB2_01293	0.68	-0.8
1,336,780	+		EFB2_01293	0.68	+0.2
1,336,781	-		EFB2_01293	0.68	-1.2
1,336,781	-		EFB2_01293	0.68	+2.2
1,336,781	-		EFB2_01293	0.68	+0.0
1,336,781	-		EFB2_01293	0.68	+0.2
1,336,804	+		EFB2_01293	0.70	+0.7
1,336,804	+		EFB2_01293	0.70	+2.7
1,336,804	+		EFB2_01293	0.70	+2.6
1,336,804	+		EFB2_01293	0.70	+0.2
1,336,805	-		EFB2_01293	0.70	+0.4
1,336,805	-		EFB2_01293	0.70	+0.5
1,336,805	-		EFB2_01293	0.70	+0.3
1,336,805	-		EFB2_01293	0.70	-2.1
1,336,805	-		EFB2_01293	0.70	-1.8
1,336,805	-		EFB2_01293	0.70	-0.6
1,336,851	-		EFB2_01293	0.74	+0.0
1,336,890	+		EFB2_01293	0.78	+1.9
1,336,890	+		EFB2_01293	0.78	-1.1
1,336,891	-		EFB2_01293	0.78	+2.0
1,336,891	-		EFB2_01293	0.78	-2.5
1,336,893	+		EFB2_01293	0.78	+1.6
1,336,928	+		EFB2_01293	0.81	+0.2
1,336,928	+		EFB2_01293	0.81	-1.4
1,336,929	-		EFB2_01293	0.81	-0.5
1,336,933	+		EFB2_01293	0.81	+3.7
1,336,933	+		EFB2_01293	0.81	-0.7
1,336,933	+		EFB2_01293	0.81	+0.2
1,336,933	+		EFB2_01293	0.81	-0.7
1,336,933	+		EFB2_01293	0.81	+0.4
1,336,933	+		EFB2_01293	0.81	+1.6
1,336,933	+		EFB2_01293	0.81	-2.4
1,336,934	-		EFB2_01293	0.82	-0.6
1,336,934	-		EFB2_01293	0.82	+1.9
1,336,934	-		EFB2_01293	0.82	-1.1
1,336,934	-		EFB2_01293	0.82	-1.3
1,336,934	-		EFB2_01293	0.82	-2.7
1,336,934	-		EFB2_01293	0.82	-0.1
1,336,967	+		EFB2_01293	0.84	-2.4
1,336,967	+		EFB2_01293	0.84	+1.2
1,336,967	+		EFB2_01293	0.84	+0.5
1,336,967	+		EFB2_01293	0.84	-2.0
1,336,967	+		EFB2_01293	0.84	-0.3
1,336,968	-		EFB2_01293	0.84	+3.7
1,336,968	-		EFB2_01293	0.84	+1.5
1,336,968	-		EFB2_01293	0.84	+2.9
1,336,968	-		EFB2_01293	0.84	+0.2
1,336,968	-		EFB2_01293	0.84	-1.3
1,336,968	-		EFB2_01293	0.84	-0.1
1,336,971	+		EFB2_01293	0.85	+0.5
1,336,972	-		EFB2_01293	0.85	-2.2
1,337,004	-		EFB2_01293	0.88	-1.0
1,337,004	-		EFB2_01293	0.88	+1.4
1,337,010	+		EFB2_01293	0.88	-2.1
1,337,076	+				+1.0
1,337,076	+				-0.0
1,337,076	+				+0.6
1,337,076	+				+1.7
1,337,076	+				+1.3
1,337,077	-				+1.0
1,337,077	-				-1.3
1,337,077	-				+0.3
1,337,082	+				-2.2
1,337,083	-				-0.4
1,337,083	-				+3.3
1,337,083	-				+0.8
1,337,085	+				-1.3
1,337,086	-				+0.1
1,337,128	-				+1.9
1,337,147	+				-1.8
1,337,147	+				-1.5
1,337,147	+				+0.6
1,337,147	+				+0.2
1,337,147	+				-1.6
1,337,147	+				-1.7
1,337,148	-				-0.3
1,337,148	-				-1.8
1,337,148	-				-1.2
1,337,148	-				+2.9
1,337,148	-				-0.9
1,337,148	-				-0.3
1,337,165	-				+1.4
1,337,171	-				+0.4
1,337,199	+				+0.7
1,337,199	+				+0.2
1,337,200	-				-1.2
1,337,200	-				-0.4
1,337,200	-				-2.0
1,337,200	-				-2.4
1,337,200	-				-3.5
1,337,257	+				+1.3
1,337,257	+				-0.2
1,337,257	+				-0.7
1,337,257	+				+2.9
1,337,257	+				-0.5
1,337,257	+				-0.4
1,337,305	+				+1.3
1,337,305	+				+1.3
1,337,305	+				+3.1
1,337,306	-				-1.4
1,337,306	-				-3.1
1,337,306	-				+0.6
1,337,306	-				-0.8
1,337,315	+				+2.2
1,337,315	+				+0.7
1,337,315	+				+1.0
1,337,315	+				+1.1
1,337,315	+				-1.8
1,337,315	+				-2.2
1,337,315	+				+0.9
1,337,316	-				+0.7
1,337,318	+				-1.4
1,337,318	+				+1.1
1,337,318	+				+0.5
1,337,318	+				-1.0
1,337,318	+				+0.1
1,337,318	+				-0.3
1,337,318	+				-1.3
1,337,318	+				-0.2
1,337,319	-				-1.5
1,337,319	-				-0.0
1,337,319	-				+0.5
1,337,319	-				-1.8
1,337,323	+				-0.1
1,337,380	-				+0.3
1,337,380	-				-0.1
1,337,388	+				-2.8
1,337,388	+				+0.9
1,337,388	+				-0.0
1,337,389	-				-1.6
1,337,389	-				-0.3
1,337,390	+				-1.9
1,337,390	+				+2.2
1,337,390	+				-2.1
1,337,390	+				+1.9
1,337,390	+				-0.1
1,337,390	+				-2.3
1,337,390	+				-0.1
1,337,391	-				-0.9
1,337,391	-				+0.3
1,337,391	-				+0.9
1,337,391	-				-0.1
1,337,391	-				-0.0
1,337,391	-				+0.6
1,337,391	-				+0.0
1,337,398	+				-1.7
1,337,398	+				+1.3
1,337,398	+				+0.9
1,337,398	+				-0.1
1,337,398	+				-0.8
1,337,399	-				-0.4
1,337,399	-				+0.4
1,337,399	-				+0.8
1,337,481	-		EFB2_01294	0.25	-1.0
1,337,481	-		EFB2_01294	0.25	+0.4
1,337,516	+		EFB2_01294	0.35	-2.4
1,337,517	-		EFB2_01294	0.35	-0.1
1,337,527	+		EFB2_01294	0.38	-2.7
1,337,527	+		EFB2_01294	0.38	+1.7
1,337,527	+		EFB2_01294	0.38	-1.8
1,337,527	+		EFB2_01294	0.38	-1.1
1,337,527	+		EFB2_01294	0.38	-1.0
1,337,528	-		EFB2_01294	0.38	-0.2
1,337,528	-		EFB2_01294	0.38	+0.0
1,337,528	-		EFB2_01294	0.38	+0.6
1,337,528	-		EFB2_01294	0.38	-1.6
1,337,528	-		EFB2_01294	0.38	-1.1
1,337,528	-		EFB2_01294	0.38	+0.4
1,337,528	-		EFB2_01294	0.38	+0.4
1,337,528	-		EFB2_01294	0.38	-0.6
1,337,528	-		EFB2_01294	0.38	-1.4
1,337,528	-		EFB2_01294	0.38	+0.6
1,337,528	-		EFB2_01294	0.38	-2.1
1,337,528	-		EFB2_01294	0.38	-0.2
1,337,528	-		EFB2_01294	0.38	-1.5
1,337,528	-		EFB2_01294	0.38	-1.3
1,337,531	+		EFB2_01294	0.39	-1.8
1,337,531	+		EFB2_01294	0.39	+0.4
1,337,531	+		EFB2_01294	0.39	+0.6
1,337,531	+		EFB2_01294	0.39	+2.9
1,337,531	+		EFB2_01294	0.39	-0.8
1,337,531	+		EFB2_01294	0.39	-1.0
1,337,531	+		EFB2_01294	0.39	-3.2
1,337,531	+		EFB2_01294	0.39	+0.5
1,337,531	+		EFB2_01294	0.39	+2.9
1,337,531	+		EFB2_01294	0.39	-1.1
1,337,531	+		EFB2_01294	0.39	-1.1
1,337,531	+		EFB2_01294	0.39	+0.3
1,337,531	+		EFB2_01294	0.39	+1.1
1,337,531	+		EFB2_01294	0.39	-1.5
1,337,531	+		EFB2_01294	0.39	-1.4
1,337,531	+		EFB2_01294	0.39	+0.5
1,337,531	+		EFB2_01294	0.39	+1.3
1,337,531	+		EFB2_01294	0.39	+1.3
1,337,531	+		EFB2_01294	0.39	+2.1
1,337,532	-		EFB2_01294	0.39	+1.3
1,337,532	-		EFB2_01294	0.39	-0.8
1,337,532	-		EFB2_01294	0.39	-2.7
1,337,532	-		EFB2_01294	0.39	-2.3
1,337,532	-		EFB2_01294	0.39	+1.0
1,337,532	-		EFB2_01294	0.39	-0.7
1,337,532	-		EFB2_01294	0.39	-1.8
1,337,532	-		EFB2_01294	0.39	-1.5
1,337,532	-		EFB2_01294	0.39	-1.1
1,337,532	-		EFB2_01294	0.39	+0.9
1,337,532	-		EFB2_01294	0.39	+0.0
1,337,532	-		EFB2_01294	0.39	+1.5
1,337,532	-		EFB2_01294	0.39	-0.2
1,337,532	-		EFB2_01294	0.39	-0.1
1,337,532	-		EFB2_01294	0.39	+0.5
1,337,532	-		EFB2_01294	0.39	-1.1
1,337,567	+		EFB2_01294	0.50	-1.7
1,337,568	-		EFB2_01294	0.50	+0.0
1,337,568	-		EFB2_01294	0.50	-2.0
1,337,573	+		EFB2_01294	0.51	-1.4
1,337,574	-		EFB2_01294	0.52	-0.9
1,337,574	-		EFB2_01294	0.52	+0.2
1,337,574	-		EFB2_01294	0.52	+0.4
1,337,574	-		EFB2_01294	0.52	-0.5
1,337,574	-		EFB2_01294	0.52	-3.0
1,337,574	-		EFB2_01294	0.52	-3.3
1,337,574	-		EFB2_01294	0.52	+2.0
1,337,574	-		EFB2_01294	0.52	-1.5
1,337,574	-		EFB2_01294	0.52	-1.1
1,337,574	-		EFB2_01294	0.52	-1.2
1,337,624	+		EFB2_01294	0.66	+1.3
1,337,624	+		EFB2_01294	0.66	+1.8
1,337,624	+		EFB2_01294	0.66	+1.4
1,337,624	+		EFB2_01294	0.66	-1.9
1,337,624	+		EFB2_01294	0.66	+1.3
1,337,624	+		EFB2_01294	0.66	+1.9
1,337,624	+		EFB2_01294	0.66	+1.5
1,337,624	+		EFB2_01294	0.66	+0.0
1,337,624	+		EFB2_01294	0.66	+0.8
1,337,624	+		EFB2_01294	0.66	-2.0
1,337,624	+		EFB2_01294	0.66	-2.0
1,337,625	-		EFB2_01294	0.67	-1.5
1,337,625	-		EFB2_01294	0.67	+3.1
1,337,625	-		EFB2_01294	0.67	+0.5
1,337,625	-		EFB2_01294	0.67	-1.8
1,337,625	-		EFB2_01294	0.67	-1.3
1,337,625	-		EFB2_01294	0.67	+2.9
1,337,625	-		EFB2_01294	0.67	+2.6
1,337,625	-		EFB2_01294	0.67	-2.1
1,337,625	-		EFB2_01294	0.67	-0.1
1,337,625	-		EFB2_01294	0.67	+0.0
1,337,625	-		EFB2_01294	0.67	+1.3
1,337,625	-		EFB2_01294	0.67	+1.0
1,337,625	-		EFB2_01294	0.67	+0.9
1,337,625	-		EFB2_01294	0.67	+0.9
1,337,625	-		EFB2_01294	0.67	-2.7
1,337,633	+		EFB2_01294	0.69	+0.2
1,337,634	-		EFB2_01294	0.69	+4.1
1,337,703	-		EFB2_01294	0.89	+0.5
1,337,723	+				+1.9
1,337,723	+				-0.4
1,337,723	+				+1.4
1,337,723	+				+2.2
1,337,724	-				+0.3
1,337,724	-				-2.1
1,337,881	-				+1.3
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