Strain Fitness in Escherichia fergusonii Becca around EFB2_01197

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,253,373	+		EFB2_01195	0.67	-1.3
1,253,373	+		EFB2_01195	0.67	+0.2
1,253,374	-		EFB2_01195	0.67	+1.3
1,253,374	-		EFB2_01195	0.67	-0.9
1,253,374	-		EFB2_01195	0.67	+1.0
1,253,374	-		EFB2_01195	0.67	-1.8
1,253,374	-		EFB2_01195	0.67	-1.0
1,253,436	+				-0.6
1,253,436	+				+0.3
1,253,436	+				-0.2
1,253,436	+				-3.1
1,253,436	+				+2.0
1,253,436	+				+1.2
1,253,437	-				-1.4
1,253,437	-				-0.4
1,253,437	-				-0.5
1,253,454	+				-0.3
1,253,455	-				-1.1
1,253,455	-				+1.3
1,253,455	-				-0.5
1,253,455	-				-0.1
1,253,455	-				-0.6
1,253,521	+				+0.8
1,253,521	+				-1.5
1,253,521	+				-0.8
1,253,522	-				-1.7
1,253,522	-				+0.9
1,253,522	-				+0.1
1,253,644	+		EFB2_01196	0.22	-1.3
1,253,644	+		EFB2_01196	0.22	-0.7
1,253,644	+		EFB2_01196	0.22	+0.4
1,253,644	+		EFB2_01196	0.22	-2.8
1,253,644	+		EFB2_01196	0.22	-1.4
1,253,645	-		EFB2_01196	0.22	-0.7
1,253,645	-		EFB2_01196	0.22	-1.6
1,253,653	-		EFB2_01196	0.23	-1.8
1,253,768	-		EFB2_01196	0.36	+0.8
1,253,768	-		EFB2_01196	0.36	-1.8
1,253,768	-		EFB2_01196	0.36	-2.2
1,253,836	+		EFB2_01196	0.44	-1.1
1,253,917	+		EFB2_01196	0.53	-2.5
1,253,917	+		EFB2_01196	0.53	+1.2
1,253,917	+		EFB2_01196	0.53	+1.3
1,253,917	+		EFB2_01196	0.53	-1.1
1,253,918	-		EFB2_01196	0.53	+2.1
1,253,918	-		EFB2_01196	0.53	-0.8
1,253,918	-		EFB2_01196	0.53	+0.8
1,253,951	+		EFB2_01196	0.57	-2.5
1,253,951	+		EFB2_01196	0.57	-0.1
1,253,951	+		EFB2_01196	0.57	+0.7
1,253,952	-		EFB2_01196	0.57	+2.1
1,253,952	-		EFB2_01196	0.57	+1.8
1,253,952	-		EFB2_01196	0.57	-0.9
1,253,952	-		EFB2_01196	0.57	-0.1
1,254,061	+		EFB2_01196	0.70	-1.4
1,254,196	+		EFB2_01196	0.85	+1.8
1,254,268	+				-1.6
1,254,268	+				+0.2
1,254,268	+				+0.3
1,254,268	+				-0.3
1,254,268	+				+0.3
1,254,268	+				-1.9
1,254,268	+				+0.9
1,254,268	+				-2.1
1,254,268	+				-0.3
1,254,268	+				-2.3
1,254,269	-				-1.7
1,254,269	-				+0.0
1,254,269	-				-0.7
1,254,269	-				-0.2
1,254,269	-				+0.7
1,254,269	-				-1.2
1,254,269	-				+0.3
1,254,286	+				+0.3
1,254,288	+				+1.5
1,254,288	+				-1.2
1,254,288	+				-2.8
1,254,288	+				-1.5
1,254,288	+				+0.8
1,254,288	+				-1.0
1,254,288	+				+0.3
1,254,288	+				-0.5
1,254,288	+				-2.8
1,254,288	+				+1.3
1,254,288	+				+0.1
1,254,288	+				+1.3
1,254,288	+				-2.3
1,254,288	+				-2.9
1,254,288	+				+0.2
1,254,288	+				+1.2
1,254,288	+				-0.5
1,254,288	+				+0.4
1,254,289	-				-0.2
1,254,289	-				-1.2
1,254,289	-				+1.3
1,254,289	-				-0.2
1,254,289	-				+1.3
1,254,289	-				-0.3
1,254,289	-				+0.6
1,254,289	-				-0.7
1,254,289	-				-1.3
1,254,289	-				+1.3
1,254,319	+				-0.4
1,254,319	+				+1.4
1,254,319	+				+0.2
1,254,319	+				-0.9
1,254,319	+				-3.3
1,254,319	+				-1.5
1,254,319	+				-1.0
1,254,319	+				+0.9
1,254,320	-				+1.0
1,254,320	-				+0.6
1,254,320	-				+2.7
1,254,320	-				+0.5
1,254,320	-				-1.6
1,254,320	-				-0.0
1,254,320	-				+0.0
1,254,320	-				-0.3
1,254,320	-				-0.9
1,254,320	-				-1.6
1,254,341	+				-0.3
1,254,341	+				+0.1
1,254,341	+				-0.1
1,254,341	+				-0.5
1,254,341	+				-0.2
1,254,341	+				+0.1
1,254,341	+				-1.4
1,254,341	+				+0.4
1,254,341	+				-0.7
1,254,342	-				-1.5
1,254,342	-				+1.6
1,254,342	-				+1.9
1,254,342	-				+0.3
1,254,342	-				-0.0
1,254,342	-				-0.4
1,254,342	-				+0.6
1,254,342	-				+0.3
1,254,348	-				-2.4
1,254,363	-				+1.4
1,254,363	-				-1.1
1,254,363	-				+0.5
1,254,386	+		EFB2_01197	0.16	-2.2
1,254,386	+		EFB2_01197	0.16	-0.7
1,254,386	+		EFB2_01197	0.16	-0.7
1,254,386	+		EFB2_01197	0.16	-0.5
1,254,386	+		EFB2_01197	0.16	+0.7
1,254,387	-		EFB2_01197	0.17	-1.9
1,254,387	-		EFB2_01197	0.17	-0.5
1,254,387	-		EFB2_01197	0.17	+0.0
1,254,387	-		EFB2_01197	0.17	-0.0
1,254,434	+		EFB2_01197	0.30	+0.1
1,254,435	-		EFB2_01197	0.30	-0.7
1,254,444	+		EFB2_01197	0.33	+0.3
1,254,444	+		EFB2_01197	0.33	-1.3
1,254,444	+		EFB2_01197	0.33	+2.2
1,254,444	+		EFB2_01197	0.33	-0.3
1,254,444	+		EFB2_01197	0.33	-1.1
1,254,444	+		EFB2_01197	0.33	-3.9
1,254,444	+		EFB2_01197	0.33	-0.0
1,254,444	+		EFB2_01197	0.33	-1.0
1,254,444	+		EFB2_01197	0.33	+0.1
1,254,444	+		EFB2_01197	0.33	-0.3
1,254,444	+		EFB2_01197	0.33	-0.2
1,254,444	+		EFB2_01197	0.33	-2.2
1,254,444	+		EFB2_01197	0.33	+0.3
1,254,444	+		EFB2_01197	0.33	+1.2
1,254,444	+		EFB2_01197	0.33	-2.6
1,254,444	+		EFB2_01197	0.33	+3.1
1,254,444	+		EFB2_01197	0.33	-2.4
1,254,444	+		EFB2_01197	0.33	+0.3
1,254,444	+		EFB2_01197	0.33	-2.4
1,254,444	+		EFB2_01197	0.33	-0.5
1,254,444	+		EFB2_01197	0.33	+1.0
1,254,445	-		EFB2_01197	0.33	-1.2
1,254,445	-		EFB2_01197	0.33	+0.6
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,445	-		EFB2_01197	0.33	+1.3
1,254,445	-		EFB2_01197	0.33	+0.6
1,254,445	-		EFB2_01197	0.33	-0.3
1,254,445	-		EFB2_01197	0.33	+0.5
1,254,445	-		EFB2_01197	0.33	-0.5
1,254,445	-		EFB2_01197	0.33	-1.8
1,254,445	-		EFB2_01197	0.33	-0.4
1,254,445	-		EFB2_01197	0.33	+0.2
1,254,445	-		EFB2_01197	0.33	-0.4
1,254,445	-		EFB2_01197	0.33	+1.6
1,254,445	-		EFB2_01197	0.33	-2.9
1,254,445	-		EFB2_01197	0.33	-1.1
1,254,445	-		EFB2_01197	0.33	+0.7
1,254,445	-		EFB2_01197	0.33	-0.2
1,254,445	-		EFB2_01197	0.33	+0.4
1,254,445	-		EFB2_01197	0.33	+1.0
1,254,445	-		EFB2_01197	0.33	-2.7
1,254,445	-		EFB2_01197	0.33	-0.8
1,254,445	-		EFB2_01197	0.33	-1.4
1,254,445	-		EFB2_01197	0.33	+0.6
1,254,445	-		EFB2_01197	0.33	-1.0
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,499	+		EFB2_01197	0.48	-2.6
1,254,500	-		EFB2_01197	0.49	+0.8
1,254,500	-		EFB2_01197	0.49	-3.4
1,254,500	-		EFB2_01197	0.49	+0.2
1,254,500	-		EFB2_01197	0.49	-1.5
1,254,602	+		EFB2_01197	0.78	+0.4
1,254,603	-		EFB2_01197	0.78	+0.7
1,254,603	-		EFB2_01197	0.78	-1.4
1,254,668	+				-0.7
1,254,669	-				-1.7
1,254,669	-				+0.2
1,254,669	-				-1.1
1,254,669	-				+0.1
1,254,669	-				-2.2
1,254,669	-				+1.3
1,254,669	-				-2.5
1,254,679	+				+1.7
1,254,680	-				+4.0
1,254,693	-				+0.6
1,254,693	-				-1.3
1,254,696	+				-0.4
1,254,696	+				-0.2
1,254,696	+				-1.1
1,254,696	+				-1.3
1,254,696	+				-0.8
1,254,696	+				+1.5
1,254,696	+				-0.5
1,254,696	+				-2.5
1,254,696	+				-0.9
1,254,697	-				+0.8
1,254,697	-				+2.8
1,254,697	-				-1.4
1,254,697	-				-1.9
1,254,697	-				-0.4
1,254,697	-				-0.2
1,254,697	-				-2.0
1,254,697	-				-0.8
1,254,697	-				+1.8
1,254,697	-				-0.4
1,254,697	-				-0.4
1,254,697	-				-2.9
1,254,697	-				-1.2
1,254,706	+				+0.3
1,254,802	-				-0.1
1,254,806	+				+0.7
1,254,874	-				+1.2
1,254,896	+				+0.5
1,254,896	+				+1.4
1,254,896	+				-0.8
1,254,897	-				-2.7
1,254,897	-				+0.5
1,254,897	-				-2.1
1,254,897	-				+0.7
1,254,907	+				-0.4
1,254,907	+				-1.1
1,254,908	-				+0.4
1,254,908	-				-1.0
1,254,908	-				-0.6
1,254,924	+				-3.2
1,254,924	+				+1.1
1,254,924	+				+0.6
1,254,924	+				-0.4
1,254,924	+				+0.7
1,254,924	+				+0.5
1,254,924	+				+0.8
1,254,924	+				-2.1
1,254,925	-				+1.6
1,254,925	-				+2.3
1,254,949	+		EFB2_01198	0.13	+1.4
1,254,969	+		EFB2_01198	0.17	+0.2
1,254,969	+		EFB2_01198	0.17	-2.0
1,254,969	+		EFB2_01198	0.17	-1.5
1,254,969	+		EFB2_01198	0.17	-2.9
1,254,969	+		EFB2_01198	0.17	+0.8
1,254,969	+		EFB2_01198	0.17	-2.0
1,254,969	+		EFB2_01198	0.17	-0.3
1,254,969	+		EFB2_01198	0.17	+0.7
1,254,969	+		EFB2_01198	0.17	+1.8
1,254,969	+		EFB2_01198	0.17	-1.2
1,254,969	+		EFB2_01198	0.17	-0.7
1,254,969	+		EFB2_01198	0.17	+2.0
1,254,970	-		EFB2_01198	0.17	-2.0
1,254,970	-		EFB2_01198	0.17	-1.9
1,254,970	-		EFB2_01198	0.17	+0.5
1,254,970	-		EFB2_01198	0.17	-0.5
1,254,970	-		EFB2_01198	0.17	+0.3
1,254,970	-		EFB2_01198	0.17	+1.3
1,254,970	-		EFB2_01198	0.17	-0.9
1,255,083	+		EFB2_01198	0.42	-1.9
1,255,083	+		EFB2_01198	0.42	-0.8
1,255,083	+		EFB2_01198	0.42	-1.1
1,255,083	+		EFB2_01198	0.42	-2.0
1,255,083	+		EFB2_01198	0.42	-0.6
1,255,083	+		EFB2_01198	0.42	+0.1
1,255,083	+		EFB2_01198	0.42	+0.5
1,255,084	-		EFB2_01198	0.42	-0.0
1,255,084	-		EFB2_01198	0.42	-3.0
1,255,084	-		EFB2_01198	0.42	+2.0
1,255,084	-		EFB2_01198	0.42	+1.2
1,255,084	-		EFB2_01198	0.42	+1.7
1,255,084	-		EFB2_01198	0.42	-0.6
1,255,084	-		EFB2_01198	0.42	+0.9
1,255,084	-		EFB2_01198	0.42	+0.5
1,255,084	-		EFB2_01198	0.42	-0.9
1,255,084	-		EFB2_01198	0.42	-0.5
1,255,106	+		EFB2_01198	0.47	-0.8
1,255,125	+		EFB2_01198	0.51	-0.7
1,255,125	+		EFB2_01198	0.51	-2.2
1,255,125	+		EFB2_01198	0.51	-2.5
1,255,125	+		EFB2_01198	0.51	+0.6
1,255,126	-		EFB2_01198	0.51	+1.0
1,255,126	-		EFB2_01198	0.51	-2.2
1,255,126	-		EFB2_01198	0.51	-0.5
1,255,128	+		EFB2_01198	0.51	+2.3
1,255,128	+		EFB2_01198	0.51	-0.2
1,255,128	+		EFB2_01198	0.51	+0.8
1,255,128	+		EFB2_01198	0.51	-0.1
1,255,128	+		EFB2_01198	0.51	+0.8
1,255,128	+		EFB2_01198	0.51	+0.4
1,255,128	+		EFB2_01198	0.51	+0.5
1,255,128	+		EFB2_01198	0.51	+0.6
1,255,128	+		EFB2_01198	0.51	-1.2
1,255,128	+		EFB2_01198	0.51	-2.0
1,255,128	+		EFB2_01198	0.51	-1.2
1,255,129	-		EFB2_01198	0.52	+2.4
1,255,129	-		EFB2_01198	0.52	+0.5
1,255,129	-		EFB2_01198	0.52	+2.2
1,255,129	-		EFB2_01198	0.52	-1.8
1,255,129	-		EFB2_01198	0.52	+1.0
1,255,129	-		EFB2_01198	0.52	+2.3
1,255,129	-		EFB2_01198	0.52	-0.3
1,255,129	-		EFB2_01198	0.52	+0.0
1,255,129	-		EFB2_01198	0.52	-0.5
1,255,129	-		EFB2_01198	0.52	-1.2
1,255,129	-		EFB2_01198	0.52	-3.3
1,255,129	-		EFB2_01198	0.52	-1.1
1,255,129	-		EFB2_01198	0.52	-2.7
1,255,129	-		EFB2_01198	0.52	-0.2
1,255,129	-		EFB2_01198	0.52	+1.1
1,255,129	-		EFB2_01198	0.52	-1.4
1,255,245	+		EFB2_01198	0.77	-2.4
1,255,245	+		EFB2_01198	0.77	-0.8
1,255,245	+		EFB2_01198	0.77	+0.3
1,255,245	+		EFB2_01198	0.77	+0.7
1,255,245	+		EFB2_01198	0.77	+0.4
1,255,245	+		EFB2_01198	0.77	+1.0
1,255,245	+		EFB2_01198	0.77	-1.1
1,255,245	+		EFB2_01198	0.77	-1.6
1,255,245	+		EFB2_01198	0.77	+0.4
1,255,246	-		EFB2_01198	0.77	+0.5
1,255,246	-		EFB2_01198	0.77	+0.8
1,255,246	-		EFB2_01198	0.77	-0.1
1,255,246	-		EFB2_01198	0.77	+3.8
1,255,246	-		EFB2_01198	0.77	+1.5
1,255,246	-		EFB2_01198	0.77	-0.3
1,255,246	-		EFB2_01198	0.77	+0.3
1,255,246	-		EFB2_01198	0.77	+1.2
1,255,246	-		EFB2_01198	0.77	+1.2
1,255,246	-		EFB2_01198	0.77	+0.7
1,255,246	-		EFB2_01198	0.77	-1.5
1,255,270	-		EFB2_01198	0.82	+2.0
1,255,270	-		EFB2_01198	0.82	-0.1
1,255,270	-		EFB2_01198	0.82	-0.5
1,255,279	+		EFB2_01198	0.84	-0.4
1,255,279	+		EFB2_01198	0.84	-0.7
1,255,279	+		EFB2_01198	0.84	+0.0
1,255,279	+		EFB2_01198	0.84	-2.5
1,255,279	+		EFB2_01198	0.84	+0.1
1,255,279	+		EFB2_01198	0.84	-2.8
1,255,279	+		EFB2_01198	0.84	-1.5
1,255,279	+		EFB2_01198	0.84	-0.7
1,255,279	+		EFB2_01198	0.84	+0.2
1,255,279	+		EFB2_01198	0.84	-1.9
1,255,279	+		EFB2_01198	0.84	-0.8
1,255,279	+		EFB2_01198	0.84	-1.5
1,255,279	+		EFB2_01198	0.84	+0.3
1,255,279	+		EFB2_01198	0.84	-2.4
1,255,279	+		EFB2_01198	0.84	+0.8
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